(Circular) (Six-base) MAPSORT of: pFN21AB8638.seq Check: 484 from: 1 to: 5827 pFN21AB8638 5827 bp With 182 enzymes: SgfI * January 16, 2009 15:27 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3637 278 Size: 53 83 186 936 2101 2468 Fragments arranged by size: 2468 2101 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3170 1937 Size: 1233 4594 Acc65I G'GTAC_C Cuts at: 3148 3148 Size: 5827 AclI AA'CG_TT Cuts at: 1563 3954 4327 1563 Size: 2391 373 3063 Fragments arranged by size: 3063 2391 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2769 3060 3137 3890 5274 5542 1632 Size: 1137 291 77 753 1384 268 1917 Fragments arranged by size: 1917 1384 1137 753 291 268 77 AfeI AGC'GCT Cuts at: 2855 2855 Size: 5827 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5630 AflIII A'CryG_T Cuts at: 1203 2106 4726 5703 1203 Size: 903 2620 977 1327 Fragments arranged by size: 2620 1327 977 903 AgeI A'CCGG_T Cuts at: 4658 4658 Size: 5827 AhdI GACnn_n'nnGTC Cuts at: 4556 4556 Size: 5827 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5827 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5827 AlwNI CAG_nnn'CTG Cuts at: 2834 3570 5142 2834 Size: 736 1572 3519 Fragments arranged by size: 3519 1572 736 ApaLI G'TGCA_C Cuts at: 3884 5040 3884 Size: 1156 4671 ApoI r'AATT_y Cuts at: 1493 2096 2306 2312 2408 2590 2633 2916 3136 Size: 603 210 6 96 182 43 283 220 Cuts at: 3136 3362 3514 5623 1493 Size: 226 152 2109 1697 Fragments arranged by size: 2109 1697 603 283 226 220 210 182 152 96 43 6 AseI AT'TA_AT Cuts at: 160 1032 4381 160 Size: 872 3349 1606 Fragments arranged by size: 3349 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5827 AvaI C'yCGr_G Cuts at: 1870 1943 3152 1870 Size: 73 1209 4545 Fragments arranged by size: 4545 1209 73 BamHI G'GATC_C Cuts at: 3157 3524 3157 Size: 367 5460 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3148 4603 618 Size: 325 217 627 1361 1455 1842 Fragments arranged by size: 1842 1455 1361 627 325 217 BanII G_rGCy'C Cuts at: 1391 3146 1391 Size: 1755 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4856 BbvCI CC'TCA_GC Cuts at: 3054 3054 Size: 5827 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2025 2059 4018 4052 1903 Size: 34 88 34 1959 34 3678 Fragments arranged by size: 3678 1959 88 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3719 4929 3719 Size: 1210 4617 BclI T'GATC_A Cuts at: 1548 1548 Size: 5827 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4438 136 Size: 107 122 71 631 605 2766 1525 Fragments arranged by size: 2766 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5822 5822 Size: 5827 BlpI GC'TnA_GC Cuts at: 3244 3244 Size: 5827 Bme1580I G_kGCm'C Cuts at: 1790 3089 3888 5044 1790 Size: 1299 799 1156 2573 Fragments arranged by size: 2573 1299 1156 799 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5827 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2404 3558 4516 Size: 416 53 83 399 24 987 1154 958 Cuts at: 4516 442 Size: 1753 Fragments arranged by size: 1753 1154 987 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5827 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2870 4487 1239 Size: 1631 1617 2579 Fragments arranged by size: 2579 1631 1617 Bpu10I CC'TnA_GC Cuts at: 3054 3054 Size: 5827 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3952 4817 5115 3952 Size: 865 298 4664 Fragments arranged by size: 4664 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2999 4490 882 Size: 617 1500 1491 2219 Fragments arranged by size: 2219 1500 1491 617 BsaAI yAC'GTr Cuts at: 493 1204 3618 493 Size: 711 2414 2702 Fragments arranged by size: 2702 2414 711 BsaBI GATnn'nnATC Cuts at: 5821 5821 Size: 5827 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3634 4016 4651 275 Size: 53 83 186 936 2101 382 635 1451 Fragments arranged by size: 2101 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2671 4260 4658 4932 5079 5490 2671 Size: 1589 398 274 147 411 3008 Fragments arranged by size: 3008 1589 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5602 Fragments arranged by size: 5602 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2720 1186 Size: 1534 4293 BseYI C'CCAG_C Cuts at: 5030 5526 5030 Size: 496 5331 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2964 1163 Size: 573 1228 4026 Fragments arranged by size: 4026 1228 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3277 4038 5066 1540 Size: 275 186 1276 761 1028 2301 Fragments arranged by size: 2301 1276 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3888 3973 5044 3888 Size: 85 1071 4671 Fragments arranged by size: 4671 1071 85 BsmI GAATG_Cn' Cuts at: 2332 3338 3431 2332 Size: 1006 93 4728 Fragments arranged by size: 4728 1006 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 3089 3146 3888 3973 5044 1391 Size: 399 1299 57 742 85 1071 2174 Fragments arranged by size: 2174 1299 1071 742 399 85 57 BspEI T'CCGG_A Cuts at: 5490 5490 Size: 5827 BspHI T'CATG_A Cuts at: 3716 5446 3716 Size: 1730 4097 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3182 844 Size: 2338 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3066 3714 1394 Size: 429 1243 648 3507 Fragments arranged by size: 3507 1243 648 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4322 4496 65 Size: 1183 3074 174 1396 Fragments arranged by size: 3074 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2556 2624 4471 4658 1700 Size: 110 746 68 1847 187 2869 Fragments arranged by size: 2869 1847 746 187 110 68 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5827 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5827 BssSI C'ACGA_G Cuts at: 3887 4899 3887 Size: 1012 4815 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5827 BstBI TT'CG_AA Cuts at: 4631 4631 Size: 5827 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5827 BstXI CCAn_nnnn'nTGG Cuts at: 2353 2536 2353 Size: 183 5644 BstYI r'GATC_y Cuts at: 1972 3157 3524 3909 3926 5378 5464 5476 5822 Size: 1185 367 385 17 1452 86 12 346 Cuts at: 5822 1972 Size: 1977 Fragments arranged by size: 1977 1452 1185 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2898 513 Size: 552 1833 3442 Fragments arranged by size: 3442 1833 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5088 Fragments arranged by size: 5088 683 56 BtsI GCAGTG_nn' Cuts at: 2973 3343 4137 4157 2973 Size: 370 794 20 4643 Fragments arranged by size: 4643 794 370 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5827 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5792 DraI TTT'AAA Cuts at: 3131 3131 Size: 5827 DraIII CAC_nnn'GTG Cuts at: 3049 3049 Size: 5827 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4834 809 Size: 507 3518 1802 Fragments arranged by size: 3518 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2518 2626 2928 Size: 54 1425 50 275 18 688 108 302 Cuts at: 2928 3274 4163 5792 8 Size: 346 889 1629 43 Fragments arranged by size: 1629 1425 889 688 346 302 275 108 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3274 1537 Size: 275 1462 4090 Fragments arranged by size: 4090 1462 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2480 3757 1353 Size: 1127 1277 3423 Fragments arranged by size: 3423 1277 1127 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4414 4788 4934 387 Size: 1064 138 2825 374 146 1280 Fragments arranged by size: 2825 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2769 2870 3060 3137 3890 4487 5274 Size: 393 1137 101 190 77 753 597 787 Cuts at: 5274 5542 1239 Size: 268 1524 Fragments arranged by size: 1524 1137 787 753 597 393 268 190 101 77 EcoO109I rG'GnC_Cy Cuts at: 3098 3098 Size: 5827 EcoRI G'AATT_C Cuts at: 2590 2633 3136 3514 2590 Size: 43 503 378 4903 Fragments arranged by size: 4903 503 378 43 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2671 2671 Size: 5827 FspI TGC'GCA Cuts at: 4333 4333 Size: 5827 HaeII r_GCGC'y Cuts at: 1678 2857 4974 1678 Size: 1179 2117 2531 Fragments arranged by size: 2531 2117 1179 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2240 2272 2715 2747 4468 Size: 32 135 32 668 32 443 32 1721 Cuts at: 4468 4500 4542 4574 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1721 668 443 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2363 2509 3171 3417 669 Size: 988 281 425 146 662 246 3079 Fragments arranged by size: 3079 988 662 425 281 246 146 HindIII A'AGCT_T Cuts at: 748 2465 748 Size: 1717 4110 HpaI GTT'AAC Cuts at: 3417 3417 Size: 5827 KpnI G_GTAC'C Cuts at: 3152 3152 Size: 5827 MfeI C'AATT_G Cuts at: 3426 3426 Size: 5827 MluI A'CGCG_T Cuts at: 5703 5703 Size: 5827 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4941 5125 1305 Size: 3636 184 2007 Fragments arranged by size: 3636 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2520 10 Size: 54 1425 343 688 3317 Fragments arranged by size: 3317 1425 688 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2534 3785 4144 4303 518 Size: 648 1368 1251 359 159 2042 Fragments arranged by size: 2042 1368 1251 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2280 2831 3243 3920 5068 5313 1606 Size: 674 551 412 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 674 551 412 245 NaeI GCC'GGC Cuts at: 2558 2626 2558 Size: 68 5759 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5275 NdeI CA'TA_TG Cuts at: 387 387 Size: 5827 NgoMIV G'CCGG_C Cuts at: 2556 2624 2556 Size: 68 5759 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5827 NotI GC'GGCC_GC Cuts at: 3274 3274 Size: 5827 NspI r_CATG'y Cuts at: 1132 1229 2110 3185 4730 1132 Size: 97 881 1075 1545 2229 Fragments arranged by size: 2229 1545 1075 881 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5827 PciI A'CATG_T Cuts at: 2106 4726 2106 Size: 2620 3207 PflMI CCAn_nnn'nTGG Cuts at: 1108 3049 1108 Size: 1941 3886 PmeI GTTT'AAAC Cuts at: 3131 3131 Size: 5827 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3896 3928 5409 5441 3896 Size: 32 1481 32 4282 Fragments arranged by size: 4282 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 3098 3098 Size: 5827 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5827 PsiI TTA'TAA Cuts at: 3397 3397 Size: 5827 PstI C_TGCA'G Cuts at: 830 2888 2914 3179 830 Size: 2058 26 265 3478 Fragments arranged by size: 3478 2058 265 26 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5827 PvuII CAG'CTG Cuts at: 2280 2831 2280 Size: 551 5276 SalI G'TCGA_C Cuts at: 1936 3169 1936 Size: 1233 4594 SanDI GG'GwC_CC Cuts at: 3098 3098 Size: 5827 SbfI CC_TGCA'GG Cuts at: 3179 3179 Size: 5827 ScaI AGT'ACT Cuts at: 4075 5787 4075 Size: 1712 4115 SfcI C'TryA_G Cuts at: 826 1045 2884 2910 3175 4310 4991 5182 826 Size: 219 1839 26 265 1135 681 191 1471 Fragments arranged by size: 1839 1471 1135 681 265 219 191 26 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5827 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5827 SmaI CCC'GGG Cuts at: 1872 3154 1872 Size: 1282 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3931 4832 5094 820 Size: 197 926 1988 901 262 1553 Fragments arranged by size: 1988 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3618 493 Size: 3125 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5827 SphI G_CATG'C Cuts at: 1132 3185 1132 Size: 2053 3774 SspI AAT'ATT Cuts at: 5 52 3751 5 Size: 47 3699 2081 Fragments arranged by size: 3699 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5827 StyI C'CwwG_G Cuts at: 513 1065 2331 3266 513 Size: 552 1266 935 3074 Fragments arranged by size: 3074 1266 935 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2138 3003 3854 3871 4024 4209 4654 Size: 1255 558 865 851 17 153 185 445 Cuts at: 4654 325 Size: 1498 Fragments arranged by size: 1498 1255 865 851 558 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 4073 5785 96 Size: 274 80 33 51 1443 2096 1712 138 Fragments arranged by size: 2096 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2753 2785 5787 5819 2753 Size: 32 3002 32 2761 Fragments arranged by size: 3002 2761 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5827 XbaI T'CTAG_A Cuts at: 3163 3163 Size: 5827 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5827 XmaI C'CCGG_G Cuts at: 1870 3152 1870 Size: 1282 4545 XmnI GAAnn'nnTTC Cuts at: 3956 3956 Size: 5827 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3635 276 Size: 53 83 186 936 2101 2468 Fragments arranged by size: 2468 2101 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I EcoICRI EcoNI EcoRV FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI RsrII SacI SacII SapI SexAI SfiI SfoI SrfI SwaI XcmI