Result of FASTA (omim) for
pFN21AB8624
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8624, 350 aa
1>>>pF1KB8624 350 - 350 aa - 350 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3621+/-0.00034; mu= 16.7147+/- 0.021
mean_var=73.4827+/-14.490, 0's: 0 Z-trim(115.1): 12 B-trim: 134 in 1/53
Lambda= 0.149617
statistics sampled from 25367 (25377) to 25367 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.298), width: 16
Scan time: 6.840
The best scores are: opt bits E(85289)
NP_056203 (OMIM: 609775) protein YIPF3 [Homo sapie ( 350) 2298 505.1 9.2e-143
XP_005249047 (OMIM: 609775) PREDICTED: protein YIP ( 315) 2057 453.1 3.8e-127
XP_011512760 (OMIM: 609775) PREDICTED: protein YIP ( 315) 2057 453.1 3.8e-127
XP_005249046 (OMIM: 609775) PREDICTED: protein YIP ( 315) 2057 453.1 3.8e-127
>>NP_056203 (OMIM: 609775) protein YIPF3 [Homo sapiens] (350 aa)
initn: 2298 init1: 2298 opt: 2298 Z-score: 2684.1 bits: 505.1 E(85289): 9.2e-143
Smith-Waterman score: 2298; 99.7% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB8 MATTAAPAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MATTAAPAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EVDADAADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EVDADAADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YFDVEPAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 YFDVEPAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIRE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIH
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_056 GTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVV
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 EGILDTLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EGILDTLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
310 320 330 340 350
>>XP_005249047 (OMIM: 609775) PREDICTED: protein YIPF3 i (315 aa)
initn: 2057 init1: 2057 opt: 2057 Z-score: 2403.6 bits: 453.1 E(85289): 3.8e-127
Smith-Waterman score: 2057; 99.7% identity (100.0% similar) in 315 aa overlap (36-350:1-315)
10 20 30 40 50 60
pF1KB8 APAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREEEVDAD
::::::::::::::::::::::::::::::
XP_005 MENMDDTSGSSFEDMGELHQRLREEEVDAD
10 20 30
70 80 90 100 110 120
pF1KB8 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIHLHALF
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_005 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIHLHALF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
220 230 240 250 260 270
310 320 330 340 350
pF1KB8 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
:::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
280 290 300 310
>>XP_011512760 (OMIM: 609775) PREDICTED: protein YIPF3 i (315 aa)
initn: 2057 init1: 2057 opt: 2057 Z-score: 2403.6 bits: 453.1 E(85289): 3.8e-127
Smith-Waterman score: 2057; 99.7% identity (100.0% similar) in 315 aa overlap (36-350:1-315)
10 20 30 40 50 60
pF1KB8 APAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREEEVDAD
::::::::::::::::::::::::::::::
XP_011 MENMDDTSGSSFEDMGELHQRLREEEVDAD
10 20 30
70 80 90 100 110 120
pF1KB8 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIHLHALF
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_011 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIHLHALF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
220 230 240 250 260 270
310 320 330 340 350
pF1KB8 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
280 290 300 310
>>XP_005249046 (OMIM: 609775) PREDICTED: protein YIPF3 i (315 aa)
initn: 2057 init1: 2057 opt: 2057 Z-score: 2403.6 bits: 453.1 E(85289): 3.8e-127
Smith-Waterman score: 2057; 99.7% identity (100.0% similar) in 315 aa overlap (36-350:1-315)
10 20 30 40 50 60
pF1KB8 APAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREEEVDAD
::::::::::::::::::::::::::::::
XP_005 MENMDDTSGSSFEDMGELHQRLREEEVDAD
10 20 30
70 80 90 100 110 120
pF1KB8 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIHLHALF
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_005 TAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIHLHALF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVEGILD
220 230 240 250 260 270
310 320 330 340 350
pF1KB8 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
:::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
280 290 300 310
350 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:43:24 2016 done: Fri Nov 4 13:43:25 2016
Total Scan time: 6.840 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]