FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8624, 350 aa
  1>>>pF1KB8624 350 - 350 aa - 350 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3564+/-0.000788; mu= 16.8623+/- 0.048
 mean_var=74.3948+/-14.696, 0's: 0 Z-trim(108.4): 15  B-trim: 0 in 0/53
 Lambda= 0.148697
 statistics sampled from 10205 (10210) to 10205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.314), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS4899.1 YIPF3 gene_id:25844|Hs108|chr6          ( 350) 2298 502.0  3e-142


>>CCDS4899.1 YIPF3 gene_id:25844|Hs108|chr6               (350 aa)
 initn: 2298 init1: 2298 opt: 2298  Z-score: 2667.4  bits: 502.0 E(32554): 3e-142
Smith-Waterman score: 2298; 99.7% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KB8 MATTAAPAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MATTAAPAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EVDADAADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EVDADAADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YFDVEPAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 YFDVEPAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQVLALLGYGLFGHCIVLFITYNIH
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
CCDS48 GTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVV
              250       260       270       280       290       300

              310       320       330       340       350
pF1KB8 EGILDTLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EGILDTLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH
              310       320       330       340       350




350 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:43:23 2016 done: Fri Nov  4 13:43:23 2016
 Total Scan time:  2.290 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]