FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8346, 127 aa 1>>>pF1KB8346 127 - 127 aa - 127 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7314+/-0.000676; mu= 9.2028+/- 0.041 mean_var=78.9934+/-15.715, 0's: 0 Z-trim(111.5): 9 B-trim: 559 in 1/52 Lambda= 0.144304 statistics sampled from 12460 (12463) to 12460 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.383), width: 16 Scan time: 1.400 The best scores are: opt bits E(32554) CCDS4211.1 PAIP2 gene_id:51247|Hs108|chr5 ( 127) 863 188.2 1.2e-48 CCDS46322.1 PAIP2B gene_id:400961|Hs108|chr2 ( 123) 531 119.0 7.4e-28 >>CCDS4211.1 PAIP2 gene_id:51247|Hs108|chr5 (127 aa) initn: 863 init1: 863 opt: 863 Z-score: 986.9 bits: 188.2 E(32554): 1.2e-48 Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: CCDS42 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP 70 80 90 100 110 120 pF1KB8 GVKYGNI ::::::: CCDS42 GVKYGNI >>CCDS46322.1 PAIP2B gene_id:400961|Hs108|chr2 (123 aa) initn: 287 init1: 268 opt: 531 Z-score: 613.5 bits: 119.0 E(32554): 7.4e-28 Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123) 10 20 30 40 50 pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER :. . ..::::. . :: ..::. : .:::::::::::::.::::.:::: :..:..: CCDS46 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV ::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::. CCDS46 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI 60 70 80 90 100 110 120 pF1KB8 PGVKYGNI :: :: CCDS46 PGEKY 120 127 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:58:18 2016 done: Fri Nov 4 11:58:18 2016 Total Scan time: 1.400 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]