FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8338, 272 aa 1>>>pF1KB8338 272 - 272 aa - 272 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1088+/-0.000807; mu= 8.4412+/- 0.049 mean_var=168.8474+/-35.542, 0's: 0 Z-trim(113.4): 152 B-trim: 95 in 1/51 Lambda= 0.098702 statistics sampled from 13839 (14013) to 13839 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.43), width: 16 Scan time: 2.640 The best scores are: opt bits E(32554) CCDS5409.1 HOXA9 gene_id:3205|Hs108|chr7 ( 272) 1894 281.0 6e-76 CCDS8869.1 HOXC9 gene_id:3225|Hs108|chr12 ( 260) 693 110.0 1.8e-24 CCDS11534.1 HOXB9 gene_id:3219|Hs108|chr17 ( 250) 592 95.6 3.7e-20 CCDS2267.2 HOXD9 gene_id:3235|Hs108|chr2 ( 352) 510 84.1 1.5e-16 CCDS8868.1 HOXC10 gene_id:3226|Hs108|chr12 ( 342) 438 73.8 1.8e-13 CCDS2266.1 HOXD10 gene_id:3236|Hs108|chr2 ( 340) 419 71.1 1.2e-12 CCDS5410.2 HOXA10 gene_id:3206|Hs108|chr7 ( 410) 414 70.5 2.2e-12 >>CCDS5409.1 HOXA9 gene_id:3205|Hs108|chr7 (272 aa) initn: 1894 init1: 1894 opt: 1894 Z-score: 1477.0 bits: 281.0 E(32554): 6e-76 Smith-Waterman score: 1894; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272) 10 20 30 40 50 60 pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 190 200 210 220 230 240 250 260 270 pF1KB8 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::::::::::::::::::::::::::::: CCDS54 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 250 260 270 >>CCDS8869.1 HOXC9 gene_id:3225|Hs108|chr12 (260 aa) initn: 800 init1: 537 opt: 693 Z-score: 553.0 bits: 110.0 E(32554): 1.8e-24 Smith-Waterman score: 824; 51.3% identity (70.4% similar) in 277 aa overlap (1-272:1-258) 10 20 30 40 50 pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPP--RQAATLAEHPDFSPCSFQS :..:: ..:::::: :.. : : :. .:. :.: ..: : .. . . :: ::: CCDS88 MSATGPISNYYVDS-LISHDNEDLLA-SRF-PATGAHPAAARPSGLVPDCSDFPSCSFAP 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 KATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGA : .::..:: :: . .. .::: :: :: ..: : ::::.:::: :: CCDS88 KPAVFSTSWAPVPSQSS-----VVYH-----PY-GPQPHLGA---DTRYMRTWLEPLSGA 60 70 80 90 100 120 130 140 150 160 170 pF1KB8 LSFAGLPSS-RPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSE .:: ..:.. : :..::. .::.:: . . : :: ::: :.. :. : CCDS88 VSFPSFPAGGRHYALKPDAYPGRRADCGPGEGR--SYPDYMYGSPGELRDRAPQTLPSPE 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB8 NNAENESGG--DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDR .: : .: .::.::.:::.::::::::::::::.::::::::::::::::::: CCDS88 ADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDR 170 180 190 200 210 220 240 250 260 270 pF1KB8 RYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE ::::::.:::::::::::::::::::::.::... : CCDS88 RYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS 230 240 250 260 >>CCDS11534.1 HOXB9 gene_id:3219|Hs108|chr17 (250 aa) initn: 704 init1: 485 opt: 592 Z-score: 475.5 bits: 95.6 E(32554): 3.7e-20 Smith-Waterman score: 761; 48.7% identity (70.5% similar) in 271 aa overlap (1-271:1-250) 10 20 30 40 50 60 pF1KB8 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA :. .:.:..:::::.. . ... ... : .. :: . ::: .: :::: :: CCDS11 MSISGTLSSYYVDSII--SHESEDAPPAKFPSGQYASS-RQPGH-AEHLEFPSCSFQPKA 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS :::::: :. .....:. ::: ::..::. : : ..::.:.::::.: . CCDS11 PVFGASWAPLSPHASGSLPS-VYH-----PYIQPQG-VPPA--ESRYLRTWLEPAPRG-- 60 70 80 90 100 130 140 150 160 170 180 pF1KB8 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA . :.. ..: ::: . :. : :: : : : ...:. : .: CCDS11 -EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSA-GREAVLSNQRPGYG----DNK 110 120 130 140 150 190 200 210 220 230 240 pF1KB8 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA :.. :: : .::.::::::::.:::::::::.::::::::::::::::::::.::: CCDS11 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 160 170 180 190 200 210 250 260 270 pF1KB8 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::.:::::::::::::::::.::...:. CCDS11 RLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 220 230 240 250 >>CCDS2267.2 HOXD9 gene_id:3235|Hs108|chr2 (352 aa) initn: 688 init1: 494 opt: 510 Z-score: 410.5 bits: 84.1 E(32554): 1.5e-16 Smith-Waterman score: 645; 44.2% identity (57.1% similar) in 312 aa overlap (32-268:49-347) 10 20 30 40 50 60 pF1KB8 ATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKAT :. ... : ::: :: :. ::: ... CCDS22 NYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGP--AATAAE---FASCSFAPRSA 20 30 40 50 60 70 70 80 90 100 110 120 pF1KB8 VFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPD-GRYMRSWLEPTPGALS ::.:::. : . :::. .:::: : :.::.: . :::.:::.:: :: . CCDS22 VFSASWSAV----PSQPPAAAAMSGLYHPYV-PPPPLAASASEPGRYVRSWMEPLPGFPG 80 90 100 110 120 130 140 150 160 pF1KB8 FAGL------------PSSRP--------YGIKPEPLSARRGDCPTLDTHTLSLTDYACG :: :: : :::::: .: . :. . : : .. . . CCDS22 GAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPE---TRAAPAPATAASTTSSSSTSLS 130 140 150 160 170 180 170 180 pF1KB8 SPP------VDREKQPSEG------AFSENNAENESGGDKP------------------- : : ::.: : : .: ...: .:: : CCDS22 SSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSAC 190 200 210 220 230 240 190 200 210 220 pF1KB8 ---PI--------------------DPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFL :: :::::::::.::::::::::::::.:::::::::: CCDS22 SDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFL 250 260 270 280 290 300 230 240 250 260 270 pF1KB8 FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::::::::::::.:::::::::::::::::::::..:.. CCDS22 FNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD 310 320 330 340 350 >>CCDS8868.1 HOXC10 gene_id:3226|Hs108|chr12 (342 aa) initn: 446 init1: 392 opt: 438 Z-score: 355.2 bits: 73.8 E(32554): 1.8e-13 Smith-Waterman score: 438; 40.9% identity (63.1% similar) in 203 aa overlap (69-267:134-329) 40 50 60 70 80 90 pF1KB8 PRQAATLAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPV : : . ::. :.. . ..: CCDS88 SVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPH 110 120 130 140 150 160 100 110 120 130 140 150 pF1KB8 AAAAPDGRY---MRSWLEPTPGALSFAGLPSSRPYGIKPE-PLSARRGDCPTLDTHTLSL ..: : . .:. :.: : : .. . :: : : . :. :: CCDS88 CSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSF---PETPKSDSQTPSPNEIKTEQSL 170 180 190 200 210 220 160 170 180 190 200 210 pF1KB8 TDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYT . ::: ..... . . : ....::. : : .: ..::: :.: :::::::: CCDS88 AG-PKGSPSESEKERAKAADSSPDTSDNEA---KEEIKAENTTGNWLTAKSGRKKRCPYT 230 240 250 260 270 220 230 240 250 260 270 pF1KB8 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::::::::::::::::.:: :... .:::.:::::::::::::.::.:.. CCDS88 KHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELT 280 290 300 310 320 330 CCDS88 SNFNFT 340 >>CCDS2266.1 HOXD10 gene_id:3236|Hs108|chr2 (340 aa) initn: 412 init1: 383 opt: 419 Z-score: 340.6 bits: 71.1 E(32554): 1.2e-12 Smith-Waterman score: 419; 53.4% identity (73.7% similar) in 133 aa overlap (135-267:203-327) 110 120 130 140 150 160 pF1KB8 GRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPV ::.: :. :: ... : : :. : CCDS22 SSTVMLQLNPRGAAKPQLSAAQLQMEKKMNEPVS---GQEPTKVSQVES--PEAKGGLPE 180 190 200 210 220 170 180 190 200 210 220 pF1KB8 DREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKE .: .. : . :.:: : : ..:..::: :.: :::::::::::::::::: CCDS22 ERSCLAEVSVSSPEVQEKES---KEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKE 230 240 250 260 270 280 230 240 250 260 270 pF1KB8 FLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE :::::::::.:: :... .:::.:::::::::::::.::.... CCDS22 FLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS 290 300 310 320 330 340 >>CCDS5410.2 HOXA10 gene_id:3206|Hs108|chr7 (410 aa) initn: 463 init1: 397 opt: 414 Z-score: 335.8 bits: 70.5 E(32554): 2.2e-12 Smith-Waterman score: 431; 48.8% identity (66.0% similar) in 162 aa overlap (117-267:237-397) 90 100 110 120 130 140 pF1KB8 HHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPT :: : . : .: . . : :.. .: CCDS54 GVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPA-LASGSADAAR 210 220 230 240 250 260 150 160 170 180 190 pF1KB8 LDTHTLSLTD--YACGS---PPVDREKQPSEGAFSE-NNAENESGGDKPPIDP-----NN . : :::: :.: . : .: : . : .::. .: : .. CCDS54 KERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGE 270 280 290 300 310 320 200 210 220 230 240 250 pF1KB8 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ ::::: :.: :::::::::::::::::::::::::::.:: :..: ..::.:::::::: CCDS54 NAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQ 330 340 350 360 370 380 260 270 pF1KB8 NRRMKMKKINKDRAKDE :::::.::.:.. CCDS54 NRRMKLKKMNRENRIRELTANFNFS 390 400 410 272 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:53:40 2016 done: Fri Nov 4 11:53:41 2016 Total Scan time: 2.640 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]