FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8327, 254 aa 1>>>pF1KB8327 254 - 254 aa - 254 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4814+/-0.000743; mu= 12.8371+/- 0.044 mean_var=59.3900+/-11.788, 0's: 0 Z-trim(108.0): 30 B-trim: 0 in 0/49 Lambda= 0.166425 statistics sampled from 9913 (9941) to 9913 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.305), width: 16 Scan time: 1.770 The best scores are: opt bits E(32554) CCDS12622.1 ETHE1 gene_id:23474|Hs108|chr19 ( 254) 1713 419.4 1.1e-117 CCDS2413.1 PNKD gene_id:25953|Hs108|chr2 ( 361) 278 74.9 8.2e-14 CCDS2411.1 PNKD gene_id:25953|Hs108|chr2 ( 385) 278 75.0 8.7e-14 CCDS32366.1 HAGH gene_id:3029|Hs108|chr16 ( 260) 252 68.7 4.6e-12 CCDS10447.2 HAGH gene_id:3029|Hs108|chr16 ( 308) 252 68.7 5.4e-12 CCDS32354.1 HAGHL gene_id:84264|Hs108|chr16 ( 282) 250 68.2 6.9e-12 >>CCDS12622.1 ETHE1 gene_id:23474|Hs108|chr19 (254 aa) initn: 1713 init1: 1713 opt: 1713 Z-score: 2226.0 bits: 419.4 E(32554): 1.1e-117 Smith-Waterman score: 1713; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254) 10 20 30 40 50 60 pF1KB8 MAEAVLRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAEAVLRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 DAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 RFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RFGRFALETRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 KIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFA 190 200 210 220 230 240 250 pF1KB8 VPANMRCGVQTPTA :::::::::::::: CCDS12 VPANMRCGVQTPTA 250 >>CCDS2413.1 PNKD gene_id:25953|Hs108|chr2 (361 aa) initn: 297 init1: 73 opt: 278 Z-score: 361.4 bits: 74.9 E(32554): 8.2e-14 Smith-Waterman score: 278; 31.2% identity (55.8% similar) in 224 aa overlap (6-214:73-289) 10 20 30 pF1KB8 MAEAVLRVARRQLSQRGGSGAPILL---RQMFEPV :: :: . . .. : :. . . :: CCDS24 LMAHSQRLLFRIGYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPV 50 60 70 80 90 100 40 50 60 70 80 90 pF1KB8 -SCTFTYLLGDRESREAVLIDPVLETAPRDAQL-IKELGLRLLYAVNTHCHADHITGSGL : ...::. : ... :: .:: . :: .: :.. :. :. . :: : :: :. CCDS24 LSDNYSYLIIDTQAQLAVAVDP---SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRD 110 120 130 140 150 100 110 120 130 140 pF1KB8 LRSLLPGCQSVISRLSGAQADLH-IEDGDSIRFGRFALETRASPGHTPGCVTFVLNDH-- : :. : .: : . : . ::. ... :.:::: : ....:. . CCDS24 LSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPY 160 170 180 190 200 210 150 160 170 180 190 200 pF1KB8 ---SMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTLPGDCLIYPAHDYH----GF : :.:: :.. ::::: :. : :.:. :. . .. : : :..:.:.: :: CCDS24 KGPSCLFSGDLLFLSGCGRT-FE-GNAETMLSSL-DTVLGLGDDTLLWPGHEYAEENLGF 220 230 240 250 260 270 210 220 230 240 250 pF1KB8 TVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFAVPANMRCGVQTPTA . ..:: : : CCDS24 A-GVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLALQEALGPGPG 280 290 300 310 320 330 >>CCDS2411.1 PNKD gene_id:25953|Hs108|chr2 (385 aa) initn: 297 init1: 73 opt: 278 Z-score: 361.0 bits: 75.0 E(32554): 8.7e-14 Smith-Waterman score: 278; 31.2% identity (55.8% similar) in 224 aa overlap (6-214:97-313) 10 20 30 pF1KB8 MAEAVLRVARRQLSQRGGSGAPILL---RQMFEPV :: :: . . .. : :. . . :: CCDS24 RGKNPMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPV 70 80 90 100 110 120 40 50 60 70 80 90 pF1KB8 -SCTFTYLLGDRESREAVLIDPVLETAPRDAQL-IKELGLRLLYAVNTHCHADHITGSGL : ...::. : ... :: .:: . :: .: :.. :. :. . :: : :: :. CCDS24 LSDNYSYLIIDTQAQLAVAVDP---SDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRD 130 140 150 160 170 180 100 110 120 130 140 pF1KB8 LRSLLPGCQSVISRLSGAQADLH-IEDGDSIRFGRFALETRASPGHTPGCVTFVLNDH-- : :. : .: : . : . ::. ... :.:::: : ....:. . CCDS24 LSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHLVYLLDGEPY 190 200 210 220 230 240 150 160 170 180 190 200 pF1KB8 ---SMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTLPGDCLIYPAHDYH----GF : :.:: :.. ::::: :. : :.:. :. . .. : : :..:.:.: :: CCDS24 KGPSCLFSGDLLFLSGCGRT-FE-GNAETMLSSL-DTVLGLGDDTLLWPGHEYAEENLGF 250 260 270 280 290 300 210 220 230 240 250 pF1KB8 TVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFAVPANMRCGVQTPTA . ..:: : : CCDS24 A-GVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLALQEALGPGPG 310 320 330 340 350 >>CCDS32366.1 HAGH gene_id:3029|Hs108|chr16 (260 aa) initn: 212 init1: 73 opt: 252 Z-score: 330.0 bits: 68.7 E(32554): 4.6e-12 Smith-Waterman score: 252; 27.5% identity (58.0% similar) in 193 aa overlap (27-213:4-188) 10 20 30 40 50 60 pF1KB8 MAEAVLRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPR ... .. .. ::. : :..::...::: CCDS32 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVV 10 20 30 70 80 90 100 110 pF1KB8 DAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLH-IEDGDS :: .. :..: ...:: : :: :. : .: : . : . . : : : .. CCDS32 DAA--RKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLK-VYGGDDRIGALTHKITHLST 40 50 60 70 80 90 120 130 140 150 160 170 pF1KB8 IRFGRFALETRASPGHTPGCVTFVLN-----DHSMAFTGDALLIRGCGRTDFQQGCAKTL .. : . .. :.: :: : . . .. . .::::.:.. :::. : .: : . CCDS32 LQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGK--FYEGTADEM 100 110 120 130 140 150 180 190 200 210 220 230 pF1KB8 YHSVHEKIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKP ... : . :: : .: .:.: :..... : ..: CCDS32 CKALLEVLGRLPPDTRVYCGHEY---TINNLKFARHVEPGNAAIREKLAWAKEKYSIGEP 160 170 180 190 200 240 250 pF1KB8 QQIDFAVPANMRCGVQTPTA CCDS32 TVPSTLAEEFTYNPFMRVREKTVQQHAGETDPVTTMRAVRREKDQFKMPRD 210 220 230 240 250 260 >>CCDS10447.2 HAGH gene_id:3029|Hs108|chr16 (308 aa) initn: 212 init1: 73 opt: 252 Z-score: 328.8 bits: 68.7 E(32554): 5.4e-12 Smith-Waterman score: 252; 27.5% identity (58.0% similar) in 193 aa overlap (27-213:52-236) 10 20 30 40 50 pF1KB8 MAEAVLRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLE ... .. .. ::. : :..::...::: CCDS10 RRGLGPALLGVFCHTDLRKNLTVDEGTMKVEVLPALTDNYMYLVIDDETKEAAIVDPVQP 30 40 50 60 70 80 60 70 80 90 100 110 pF1KB8 TAPRDAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLH-IE :: .. :..: ...:: : :: :. : .: : . : . . : : : CCDS10 QKVVDAA--RKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLK-VYGGDDRIGALTHKIT 90 100 110 120 130 120 130 140 150 160 170 pF1KB8 DGDSIRFGRFALETRASPGHTPGCVTFVLN-----DHSMAFTGDALLIRGCGRTDFQQGC .... : . .. :.: :: : . . .. . .::::.:.. :::. : .: CCDS10 HLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGK--FYEGT 140 150 160 170 180 190 180 190 200 210 220 230 pF1KB8 AKTLYHSVHEKIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLN : . ... : . :: : .: .:.: :..... : ..: CCDS10 ADEMCKALLEVLGRLPPDTRVYCGHEY---TINNLKFARHVEPGNAAIREKLAWAKEKYS 200 210 220 230 240 250 240 250 pF1KB8 LPKPQQIDFAVPANMRCGVQTPTA CCDS10 IGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGETDPVTTMRAVRREKDQFKMPRD 260 270 280 290 300 >>CCDS32354.1 HAGHL gene_id:84264|Hs108|chr16 (282 aa) initn: 224 init1: 110 opt: 250 Z-score: 326.9 bits: 68.2 E(32554): 6.9e-12 Smith-Waterman score: 250; 27.8% identity (55.7% similar) in 194 aa overlap (36-224:13-193) 10 20 30 40 50 60 pF1KB8 LRVARRQLSQRGGSGAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLETAPRDAQLI . ::. .. .:::: .: . . : ... CCDS32 MKVKVIPVLEDNYMYLVIEELTREAVAVD--VAVPKRLLEIV 10 20 30 40 70 80 90 100 110 120 pF1KB8 KELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRF . :. : ...:: : :: :. : : :: . . . .. :. .::: . CCDS32 GREGVSLTAVLTTHHHWDHARGNPELARLRPGLAVLGADERIFSLTRRLAHGEELRFGAI 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB8 ALETRASPGHTPGCVTFVL-----NDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHE .. .:::: : ... : : :.:::: . ::: .: :. .:.:. : CCDS32 HVRCLLTPGHTAGHMSYFLWEDDCPDPPALFSGDALSVAGCGSC--LEGSAQQMYQSLAE 110 120 130 140 150 190 200 210 220 230 240 pF1KB8 KIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEEFVKIMGNLNLPKPQQIDFA . ::: . .. .:.. :.:..: . ..: :.. :. CCDS32 -LGTLPPETKVFCGHEH---TLSNLEFAQKVEP-----CNDHVRAKLSWAKKRDEDDVPT 160 170 180 190 200 250 pF1KB8 VPANMRCGVQTPTA CCDS32 VPSTLGEERLYNPFLRVAEEPVRKFTGKAVPADVLEALCKERARFEQAGEPRQPQARALL 210 220 230 240 250 260 254 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:46:57 2016 done: Fri Nov 4 11:46:57 2016 Total Scan time: 1.770 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]