Result of FASTA (omim) for
pFN21AB8264
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8264, 210 aa
1>>>pF1KB8264 210 - 210 aa - 210 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3594+/-0.000359; mu= 13.8938+/- 0.022
mean_var=70.9056+/-13.868, 0's: 0 Z-trim(113.3): 17 B-trim: 42 in 1/57
Lambda= 0.152312
statistics sampled from 22598 (22614) to 22598 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.265), width: 16
Scan time: 4.090
The best scores are: opt bits E(85289)
NP_002686 (OMIM: 180664) DNA-directed RNA polymera ( 210) 1381 312.3 3.7e-85
XP_011526372 (OMIM: 180664) PREDICTED: DNA-directe ( 211) 1358 307.2 1.2e-83
NP_001303252 (OMIM: 180664) DNA-directed RNA polym ( 117) 739 171.1 6.7e-43
NP_001303253 (OMIM: 180664) DNA-directed RNA polym ( 117) 739 171.1 6.7e-43
XP_016882372 (OMIM: 180664) PREDICTED: DNA-directe ( 118) 727 168.4 4.2e-42
>>NP_002686 (OMIM: 180664) DNA-directed RNA polymerases (210 aa)
initn: 1381 init1: 1381 opt: 1381 Z-score: 1649.9 bits: 312.3 E(85289): 3.7e-85
Smith-Waterman score: 1381; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)
10 20 30 40 50 60
pF1KB8 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
130 140 150 160 170 180
190 200 210
pF1KB8 RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
::::::::::::::::::::::::::::::
NP_002 RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
190 200 210
>>XP_011526372 (OMIM: 180664) PREDICTED: DNA-directed RN (211 aa)
initn: 1356 init1: 1064 opt: 1358 Z-score: 1622.5 bits: 307.2 E(85289): 1.2e-83
Smith-Waterman score: 1358; 99.1% identity (99.1% similar) in 211 aa overlap (1-210:1-211)
10 20 30 40 50 60
pF1KB8 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTV
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
XP_011 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARY-KLRENQLPRIQAGDPV
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
XP_011 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYSKLRENQLPRIQAGDPV
130 140 150 160 170 180
180 190 200 210
pF1KB8 ARYFGIKRGQVVKIIRPSETAGRYITYRLVQ
:::::::::::::::::::::::::::::::
XP_011 ARYFGIKRGQVVKIIRPSETAGRYITYRLVQ
190 200 210
>>NP_001303252 (OMIM: 180664) DNA-directed RNA polymeras (117 aa)
initn: 739 init1: 739 opt: 739 Z-score: 891.2 bits: 171.1 E(85289): 6.7e-43
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 117 aa overlap (94-210:1-117)
70 80 90 100 110 120
pF1KB8 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP
::::::::::::::::::::::::::::::
NP_001 MQEENITRALIVVQQGMTPSAKQSLVDMAP
10 20 30
130 140 150 160 170 180
pF1KB8 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF
40 50 60 70 80 90
190 200 210
pF1KB8 GIKRGQVVKIIRPSETAGRYITYRLVQ
:::::::::::::::::::::::::::
NP_001 GIKRGQVVKIIRPSETAGRYITYRLVQ
100 110
>>NP_001303253 (OMIM: 180664) DNA-directed RNA polymeras (117 aa)
initn: 739 init1: 739 opt: 739 Z-score: 891.2 bits: 171.1 E(85289): 6.7e-43
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 117 aa overlap (94-210:1-117)
70 80 90 100 110 120
pF1KB8 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP
::::::::::::::::::::::::::::::
NP_001 MQEENITRALIVVQQGMTPSAKQSLVDMAP
10 20 30
130 140 150 160 170 180
pF1KB8 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF
40 50 60 70 80 90
190 200 210
pF1KB8 GIKRGQVVKIIRPSETAGRYITYRLVQ
:::::::::::::::::::::::::::
NP_001 GIKRGQVVKIIRPSETAGRYITYRLVQ
100 110
>>XP_016882372 (OMIM: 180664) PREDICTED: DNA-directed RN (118 aa)
initn: 725 init1: 433 opt: 727 Z-score: 876.9 bits: 168.4 E(85289): 4.2e-42
Smith-Waterman score: 727; 99.2% identity (99.2% similar) in 118 aa overlap (94-210:1-118)
70 80 90 100 110 120
pF1KB8 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP
::::::::::::::::::::::::::::::
XP_016 MQEENITRALIVVQQGMTPSAKQSLVDMAP
10 20 30
130 140 150 160 170 180
pF1KB8 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARY-KLRENQLPRIQAGDPVARY
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_016 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYSKLRENQLPRIQAGDPVARY
40 50 60 70 80 90
190 200 210
pF1KB8 FGIKRGQVVKIIRPSETAGRYITYRLVQ
::::::::::::::::::::::::::::
XP_016 FGIKRGQVVKIIRPSETAGRYITYRLVQ
100 110
210 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:09:30 2016 done: Fri Nov 4 11:09:31 2016
Total Scan time: 4.090 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]