Result of FASTA (omim) for
pFN21AB8255
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8255, 317 aa
1>>>pF1KB8255 317 - 317 aa - 317 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5010+/-0.000497; mu= 9.4942+/- 0.030
mean_var=185.8908+/-40.106, 0's: 0 Z-trim(112.5): 452 B-trim: 188 in 2/47
Lambda= 0.094069
statistics sampled from 20795 (21390) to 20795 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.251), width: 16
Scan time: 5.680
The best scores are: opt bits E(85289)
NP_006089 (OMIM: 176981) receptor of activated pro ( 317) 2171 307.7 2e-83
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 416 69.7 1.2e-11
NP_002066 (OMIM: 139130,145500,617024) guanine nuc ( 340) 405 68.1 2.9e-11
XP_011519255 (OMIM: 139130,145500,617024) PREDICTE ( 360) 405 68.1 3.1e-11
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321) 392 66.3 9.7e-11
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369) 392 66.4 1.1e-10
XP_016880191 (OMIM: 601545,607432) PREDICTED: plat ( 345) 388 65.8 1.5e-10
XP_016880188 (OMIM: 601545,607432) PREDICTED: plat ( 410) 388 65.9 1.6e-10
XP_016880189 (OMIM: 601545,607432) PREDICTED: plat ( 410) 388 65.9 1.6e-10
NP_000421 (OMIM: 601545,607432) platelet-activatin ( 410) 388 65.9 1.6e-10
XP_016880190 (OMIM: 601545,607432) PREDICTED: plat ( 410) 388 65.9 1.6e-10
XP_011522205 (OMIM: 601545,607432) PREDICTED: plat ( 428) 388 65.9 1.7e-10
XP_011522204 (OMIM: 601545,607432) PREDICTED: plat ( 428) 388 65.9 1.7e-10
XP_011522203 (OMIM: 601545,607432) PREDICTED: plat ( 428) 388 65.9 1.7e-10
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334) 364 62.5 1.4e-09
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334) 364 62.5 1.4e-09
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334) 364 62.5 1.4e-09
XP_016856550 (OMIM: 139380,613065,616973) PREDICTE ( 340) 363 62.4 1.5e-09
XP_016856549 (OMIM: 139380,613065,616973) PREDICTE ( 340) 363 62.4 1.5e-09
XP_016856548 (OMIM: 139380,613065,616973) PREDICTE ( 340) 363 62.4 1.5e-09
NP_002065 (OMIM: 139380,613065,616973) guanine nuc ( 340) 363 62.4 1.5e-09
NP_001269468 (OMIM: 139380,613065,616973) guanine ( 340) 363 62.4 1.5e-09
NP_001151 (OMIM: 602233) apoptotic protease-activa (1194) 371 64.2 1.6e-09
NP_863658 (OMIM: 602233) apoptotic protease-activa (1205) 371 64.2 1.6e-09
XP_006713784 (OMIM: 610863,615185) PREDICTED: guan ( 340) 344 59.8 9.2e-09
XP_005247749 (OMIM: 610863,615185) PREDICTED: guan ( 340) 344 59.8 9.2e-09
NP_067642 (OMIM: 610863,615185) guanine nucleotide ( 340) 344 59.8 9.2e-09
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 330 58.1 4.2e-08
XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 ( 300) 323 56.9 6.1e-08
XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 ( 326) 323 56.9 6.4e-08
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 323 57.0 6.8e-08
XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 ( 374) 323 57.0 7e-08
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 323 57.1 7.4e-08
NP_037361 (OMIM: 602233) apoptotic protease-activa (1237) 330 58.6 7.5e-08
NP_863651 (OMIM: 602233) apoptotic protease-activa (1248) 330 58.6 7.6e-08
XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 318 56.1 8.7e-08
XP_011531867 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 318 56.1 8.7e-08
XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 318 56.1 8.7e-08
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 315 55.8 1.2e-07
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 315 55.8 1.2e-07
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 315 56.1 1.8e-07
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522) 315 56.1 1.8e-07
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 308 54.9 2.6e-07
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 308 54.9 2.6e-07
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 308 54.9 2.6e-07
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 308 54.9 2.6e-07
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390) 308 55.0 2.9e-07
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 308 55.1 3.5e-07
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 308 55.1 3.5e-07
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 308 55.2 3.5e-07
>>NP_006089 (OMIM: 176981) receptor of activated protein (317 aa)
initn: 2171 init1: 2171 opt: 2171 Z-score: 1618.7 bits: 307.7 E(85289): 2e-83
Smith-Waterman score: 2171; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB8 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA
250 260 270 280 290 300
310
pF1KB8 GYTDNLVRVWQVTIGTR
:::::::::::::::::
NP_006 GYTDNLVRVWQVTIGTR
310
>>NP_001186706 (OMIM: 614784,615973) POC1 centriolar pro (436 aa)
initn: 564 init1: 159 opt: 416 Z-score: 330.0 bits: 69.7 E(85289): 1.2e-11
Smith-Waterman score: 426; 31.0% identity (60.4% similar) in 268 aa overlap (51-311:4-256)
30 40 50 60 70
pF1KB8 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFA
:. :: : ::. :..: .: :..
NP_001 MLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLL
10 20 30
80 90 100 110 120 130
pF1KB8 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC
:.: : :.::: .: .:: : :: ::.:.. ....:.::.::.: ..
NP_001 ASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVW-SMYRQ
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV
.. . :..:: :..:::.. .::::. :: .:.:. .: . .: .:. : :
NP_001 RFLYSLYRHTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFV
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 TVSPDGSLCASGGKDGQAMLWDLNEGK---HLYTLDGGDIINALCFSPN-RYWLCAATGP
.:.:. ::.:.: . .::. .: : . .:: .: . : :. : . :..
NP_001 DFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGG--VNCISFHPSGNYLITASSDG
160 170 180 190 200
260 270 280 290 300 310
pF1KB8 SIKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT
..:: :: ::..: . .... : ....: :. . .: .:. : .:.
NP_001 TLKILDLLEGRLIY--------TLQGHTGP--VFTVSFSKGGELFASGGADTQVLLWRTN
210 220 230 240 250
pF1KB8 IGTR
NP_001 FDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVETVEINPKLEVIDLQISTPP
260 270 280 290 300 310
>>NP_002066 (OMIM: 139130,145500,617024) guanine nucleot (340 aa)
initn: 333 init1: 221 opt: 405 Z-score: 323.1 bits: 68.1 E(85289): 2.9e-11
Smith-Waterman score: 405; 31.5% identity (60.0% similar) in 260 aa overlap (56-310:48-297)
30 40 50 60 70 80
pF1KB8 QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG
.:.:::: . . ..:... .:.: ::
NP_002 IADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDG
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB8 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL---GVCKYTV
: .:: : . .. . ... :.. :.. .. .. :. :. ...: : : .
NP_002 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSR
80 90 100 110 120 130
150 160 170 180 190 200
pF1KB8 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP
. .:. ..:: :: . : :..: : : .:.. . . :: .:::: ...:::
NP_002 ELSAHTGYLSCCRFLDD--NNIVTSSG-DTTCALWDIETGQQKTVFVGHTGDCMSLAVSP
140 150 160 170 180 190
210 220 230 240 250 260
pF1KB8 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGP-SIKIWD
: .: ::. :..: :::. :: :. : . :::.:: :: .:... : ...:
NP_002 DFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFD
200 210 220 230 240 250
270 280 290 300 310
pF1KB8 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
:.. ::.: : .. ::.:.: .:. ::::: : ::
NP_002 LRA-------DQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSMKSERVGI
260 270 280 290 300
NP_002 LSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
310 320 330 340
>>XP_011519255 (OMIM: 139130,145500,617024) PREDICTED: g (360 aa)
initn: 333 init1: 221 opt: 405 Z-score: 322.8 bits: 68.1 E(85289): 3.1e-11
Smith-Waterman score: 405; 31.5% identity (60.0% similar) in 260 aa overlap (56-310:48-297)
30 40 50 60 70 80
pF1KB8 QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG
.:.:::: . . ..:... .:.: ::
XP_011 IADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLLVSASQDG
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB8 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL---GVCKYTV
: .:: : . .. . ... :.. :.. .. .. :. :. ...: : : .
XP_011 KLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSR
80 90 100 110 120 130
150 160 170 180 190 200
pF1KB8 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP
. .:. ..:: :: . : :..: : : .:.. . . :: .:::: ...:::
XP_011 ELSAHTGYLSCCRFLDD--NNIVTSSG-DTTCALWDIETGQQKTVFVGHTGDCMSLAVSP
140 150 160 170 180 190
210 220 230 240 250 260
pF1KB8 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGP-SIKIWD
: .: ::. :..: :::. :: :. : . :::.:: :: .:... : ...:
XP_011 DFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFD
200 210 220 230 240 250
270 280 290 300 310
pF1KB8 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
:.. ::.: : .. ::.:.: .:. ::::: : ::
XP_011 LRA-------DQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSMKSERVGK
260 270 280 290 300
XP_011 GQPWLLLPQLEGPSPALPPHSVPPISSHFGLSYCCPLSLGDSTPGIQYPLVPN
310 320 330 340 350 360
>>XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 cen (321 aa)
initn: 465 init1: 173 opt: 392 Z-score: 313.8 bits: 66.3 E(85289): 9.7e-11
Smith-Waterman score: 418; 31.6% identity (59.2% similar) in 282 aa overlap (37-311:2-261)
10 20 30 40 50 60
pF1KB8 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ-RALR--GHS
:. ...:.. :: :: : ::.
XP_016 MDSCLMVWHMK--------PQSRAYRFTGHK
10 20
70 80 90 100 110 120
pF1KB8 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG
:. : .: .:.. ::: : :.:.: .. . : .:: : :: : ::....:..
XP_016 DAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTA
30 40 50 60 70 80
130 140 150 160 170 180
pF1KB8 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK
: :::.:.: : :. . .: .:: :..:::.. .::: . :: ::.:. .. .
XP_016 SDDKTVKVWAT-HRQKFLFSLSQHINWVRCAKFSPDGR--LIVSASDDKTVKLWDKSSRE
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB8 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALCF
.. : :... : :.:. :..: :. . .::. . : : : .. .:.: :
XP_016 CVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSA-AVNGLSF
150 160 170 180 190
250 260 270 280 290
pF1KB8 SPN-RYWLCAATGPSIKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF
:. : . :.. ..:: :: ::... : . : :..:.: :. .
XP_016 HPSGNYLITASSDSTLKILDLMEGRLLY---------TLHGHQGPA-TTVAFSRTGEYFA
200 210 220 230 240
300 310
pF1KB8 AGYTDNLVRVWQVTIGTR
.: .:. : ::.
XP_016 SGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMGNLTVSILEQRLTLTEDKLKQCL
250 260 270 280 290 300
>>NP_001155053 (OMIM: 614783,614813) POC1 centriolar pro (369 aa)
initn: 465 init1: 173 opt: 392 Z-score: 313.1 bits: 66.4 E(85289): 1.1e-10
Smith-Waterman score: 418; 31.6% identity (59.2% similar) in 282 aa overlap (37-311:2-261)
10 20 30 40 50 60
pF1KB8 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ-RALR--GHS
:. ...:.. :: :: : ::.
NP_001 MDSCLMVWHMK--------PQSRAYRFTGHK
10 20
70 80 90 100 110 120
pF1KB8 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG
:. : .: .:.. ::: : :.:.: .. . : .:: : :: : ::....:..
NP_001 DAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTA
30 40 50 60 70 80
130 140 150 160 170 180
pF1KB8 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK
: :::.:.: : :. . .: .:: :..:::.. .::: . :: ::.:. .. .
NP_001 SDDKTVKVWAT-HRQKFLFSLSQHINWVRCAKFSPDGR--LIVSASDDKTVKLWDKSSRE
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB8 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALCF
.. : :... : :.:. :..: :. . .::. . : : : .. .:.: :
NP_001 CVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSA-AVNGLSF
150 160 170 180 190
250 260 270 280 290
pF1KB8 SPN-RYWLCAATGPSIKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF
:. : . :.. ..:: :: ::... : . : :..:.: :. .
NP_001 HPSGNYLITASSDSTLKILDLMEGRLLY---------TLHGHQGPA-TTVAFSRTGEYFA
200 210 220 230 240
300 310
pF1KB8 AGYTDNLVRVWQVTIGTR
.: .:. : ::.
NP_001 SGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQS
250 260 270 280 290 300
>>XP_016880191 (OMIM: 601545,607432) PREDICTED: platelet (345 aa)
initn: 557 init1: 203 opt: 388 Z-score: 310.5 bits: 65.8 E(85289): 1.5e-10
Smith-Waterman score: 461; 31.2% identity (56.8% similar) in 324 aa overlap (11-311:39-343)
10 20 30 40
pF1KB8 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI
:.:: . ::.. : : :. :::.: ::
XP_016 EAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMV-SASEDATI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR
.: :: : .:.:.::. :.:. .. .:.. : : : :..:::. :
XP_016 KVWDY---ET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT
70 80 90 100 110 120
110 120 130 140 150
pF1KB8 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPN
. :: ..: :::. .. .:::.:::::::.:.. : : : .: ::: :: ::
XP_016 MHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--GHREWVRMVR--PN
130 140 150 160 170
160 170 180 190 200
pF1KB8 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA-----------
... .:.::. :. :.:: .:. . :.. : .. .. .:..: .
XP_016 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK
180 190 200 210 220 230
210 220 230 240 250
pF1KB8 ---------SGGKDGQAMLWDLNEGKHLYTLDGGD--IINALCFSPNRYWLCAATGPSIK
::..: .::.. : :.:: : : . ..: : ... : : ...
XP_016 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR
240 250 260 270 280 290
260 270 280 290 300 310
pF1KB8 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
.:: ..: . :. :. ::: . . . .: .:. :.::.
XP_016 VWDYKNKRCMKTLN---------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR
300 310 320 330 340
>>XP_016880188 (OMIM: 601545,607432) PREDICTED: platelet (410 aa)
initn: 557 init1: 203 opt: 388 Z-score: 309.7 bits: 65.9 E(85289): 1.6e-10
Smith-Waterman score: 461; 31.2% identity (56.8% similar) in 324 aa overlap (11-311:104-408)
10 20 30 40
pF1KB8 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI
:.:: . ::.. : : :. :::.: ::
XP_016 EAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMV-SASEDATI
80 90 100 110 120 130
50 60 70 80 90 100
pF1KB8 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR
.: :: : .:.:.::. :.:. .. .:.. : : : :..:::. :
XP_016 KVWDY---ET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT
140 150 160 170 180
110 120 130 140 150
pF1KB8 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPN
. :: ..: :::. .. .:::.:::::::.:.. : : : .: ::: :: ::
XP_016 MHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--GHREWVRMVR--PN
190 200 210 220 230 240
160 170 180 190 200
pF1KB8 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA-----------
... .:.::. :. :.:: .:. . :.. : .. .. .:..: .
XP_016 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK
250 260 270 280 290 300
210 220 230 240 250
pF1KB8 ---------SGGKDGQAMLWDLNEGKHLYTLDGGD--IINALCFSPNRYWLCAATGPSIK
::..: .::.. : :.:: : : . ..: : ... : : ...
XP_016 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR
310 320 330 340 350 360
260 270 280 290 300 310
pF1KB8 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
.:: ..: . :. :. ::: . . . .: .:. :.::.
XP_016 VWDYKNKRCMKTLN---------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR
370 380 390 400 410
>>XP_016880189 (OMIM: 601545,607432) PREDICTED: platelet (410 aa)
initn: 557 init1: 203 opt: 388 Z-score: 309.7 bits: 65.9 E(85289): 1.6e-10
Smith-Waterman score: 461; 31.2% identity (56.8% similar) in 324 aa overlap (11-311:104-408)
10 20 30 40
pF1KB8 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI
:.:: . ::.. : : :. :::.: ::
XP_016 EAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMV-SASEDATI
80 90 100 110 120 130
50 60 70 80 90 100
pF1KB8 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR
.: :: : .:.:.::. :.:. .. .:.. : : : :..:::. :
XP_016 KVWDY---ET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT
140 150 160 170 180
110 120 130 140 150
pF1KB8 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPN
. :: ..: :::. .. .:::.:::::::.:.. : : : .: ::: :: ::
XP_016 MHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--GHREWVRMVR--PN
190 200 210 220 230 240
160 170 180 190 200
pF1KB8 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA-----------
... .:.::. :. :.:: .:. . :.. : .. .. .:..: .
XP_016 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK
250 260 270 280 290 300
210 220 230 240 250
pF1KB8 ---------SGGKDGQAMLWDLNEGKHLYTLDGGD--IINALCFSPNRYWLCAATGPSIK
::..: .::.. : :.:: : : . ..: : ... : : ...
XP_016 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR
310 320 330 340 350 360
260 270 280 290 300 310
pF1KB8 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
.:: ..: . :. :. ::: . . . .: .:. :.::.
XP_016 VWDYKNKRCMKTLN---------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR
370 380 390 400 410
>>NP_000421 (OMIM: 601545,607432) platelet-activating fa (410 aa)
initn: 557 init1: 203 opt: 388 Z-score: 309.7 bits: 65.9 E(85289): 1.6e-10
Smith-Waterman score: 461; 31.2% identity (56.8% similar) in 324 aa overlap (11-311:104-408)
10 20 30 40
pF1KB8 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI
:.:: . ::.. : : :. :::.: ::
NP_000 EAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMV-SASEDATI
80 90 100 110 120 130
50 60 70 80 90 100
pF1KB8 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR
.: :: : .:.:.::. :.:. .. .:.. : : : :..:::. :
NP_000 KVWDY---ET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT
140 150 160 170 180
110 120 130 140 150
pF1KB8 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPN
. :: ..: :::. .. .:::.:::::::.:.. : : : .: ::: :: ::
NP_000 MHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT--GHREWVRMVR--PN
190 200 210 220 230 240
160 170 180 190 200
pF1KB8 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA-----------
... .:.::. :. :.:: .:. . :.. : .. .. .:..: .
NP_000 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK
250 260 270 280 290 300
210 220 230 240 250
pF1KB8 ---------SGGKDGQAMLWDLNEGKHLYTLDGGD--IINALCFSPNRYWLCAATGPSIK
::..: .::.. : :.:: : : . ..: : ... : : ...
NP_000 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR
310 320 330 340 350 360
260 270 280 290 300 310
pF1KB8 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
.:: ..: . :. :. ::: . . . .: .:. :.::.
NP_000 VWDYKNKRCMKTLN---------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR
370 380 390 400 410
317 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:04:14 2016 done: Fri Nov 4 11:04:15 2016
Total Scan time: 5.680 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]