Result of FASTA (omim) for
pFN21AB8205
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8205, 351 aa
1>>>pF1KB8205 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0481+/-0.00027; mu= 19.1082+/- 0.017
mean_var=75.8972+/-15.167, 0's: 0 Z-trim(120.7): 15 B-trim: 1214 in 1/56
Lambda= 0.147218
statistics sampled from 36236 (36252) to 36236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.425), width: 16
Scan time: 7.740
The best scores are: opt bits E(85289)
NP_000318 (OMIM: 180721,268000,608133) rod outer s ( 351) 2413 521.1 1.4e-147
NP_000313 (OMIM: 136880,169150,179605,608133,60816 ( 346) 812 181.1 3.2e-45
NP_620598 (OMIM: 179620,602243,609057) CD151 antig ( 253) 167 44.0 0.00044
NP_620599 (OMIM: 179620,602243,609057) CD151 antig ( 253) 167 44.0 0.00044
NP_001034579 (OMIM: 179620,602243,609057) CD151 an ( 253) 167 44.0 0.00044
NP_004348 (OMIM: 179620,602243,609057) CD151 antig ( 253) 167 44.0 0.00044
>>NP_000318 (OMIM: 180721,268000,608133) rod outer segme (351 aa)
initn: 2413 init1: 2413 opt: 2413 Z-score: 2770.6 bits: 521.1 E(85289): 1.4e-147
Smith-Waterman score: 2413; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)
10 20 30 40 50 60
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 DAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAPEEAPPGEAPPKEDLSEA
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DAGGETQGYLFPSGLKDMLKTAWLQGGVACRPAPEEAPPGEAPPKEDLSEA
310 320 330 340 350
>>NP_000313 (OMIM: 136880,169150,179605,608133,608161,61 (346 aa)
initn: 768 init1: 666 opt: 812 Z-score: 932.9 bits: 181.1 E(85289): 3.2e-45
Smith-Waterman score: 812; 36.0% identity (69.8% similar) in 344 aa overlap (4-343:3-343)
10 20 30 40 50 60
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLAPSCQFP
.: . . . :..:::::::..:. .::: .:. . : ..::. . . : .
NP_000 MALLKVKFDQKKRVKLAQGLWLMNWFSVLAGIIIFSLGLFLKIELRKRSDVMNNS-ESH
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 VLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGLLVVALG
.:.. .. :... . .. .:. : : :. : : :. . . :..:::
NP_000 FVPNSLIGMGVLSCVFNSLAGKICYDALDPAKYARWKPWLKPYLAICVLFNIILFLVALC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 LALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGYKDWFGV
: : :::...: .:: ... .:.::..::.: :. .: ::....::: .:..::: .
NP_000 CFL-LRGSLENTLGQGLKNGMKYYRDTDTPGRCFMKKTIDMLQIEFKCCGNNGFRDWFEI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 QWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSYAHPLFD
::.:.:::: ....: :::.:::.: ::.:::::::::: :::::.: ..... :: .:
NP_000 QWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQITNNSAHYSYD
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 PRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALEGLGGVI
. . :::..::. .:: . ..: ...: . . .:... . .:::::::.:.:...
NP_000 HQTEELNLWVRGCRAALLSYYSSLMNSMGVVTLLIWLFEVTITIGLRYLQTSLDGVSNPE
240 250 260 270 280 290
310 320 330 340 350
pF1KB8 DAGGETQGYLFPSGLKDMLKTAWLQG----GVACRPAPEEAPPGEAPPKEDLSEA
.. .:.::.:. .. . : :.:.. : . . : : :.::
NP_000 ESESESQGWLLERSVPETWK-AFLESVKKLGKGNQVEAEGADAGQAPEAG
300 310 320 330 340
>>NP_620598 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 143 init1: 116 opt: 167 Z-score: 194.4 bits: 44.0 E(85289): 0.00044
Smith-Waterman score: 184; 29.0% identity (52.7% similar) in 186 aa overlap (21-206:27-191)
10 20 30 40 50
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLA
.:: . : ..: :. : ..: ::.::
NP_620 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAG-LAVMAVGIWTLALKSDYISLLASGTYLA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGL
. .: ..::.:.. ::..: :. : : . ::. :
NP_620 TAY---IL----VVAGTVVMVTGVLGCCATFKERRNLL----RLYFILLLIIFL-----L
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGY
..: :: : .:. :.:.: ... : . ::: . ::.:: ..:::: ..
NP_620 EIIAGILAYAYYQQLNTELKENLKDTMT--KRYHQPGHEAVTSAVDQLQQEFHCCGSNNS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 KDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSY
.:: .:. :. . : : : : ..: .:
NP_620 QDWRDSEWIRSQ--EAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEH
170 180 190 200 210
240 250 260 270 280 290
pF1KB8 AHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALE
NP_620 LRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY
220 230 240 250
>>NP_620599 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 143 init1: 116 opt: 167 Z-score: 194.4 bits: 44.0 E(85289): 0.00044
Smith-Waterman score: 184; 29.0% identity (52.7% similar) in 186 aa overlap (21-206:27-191)
10 20 30 40 50
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLA
.:: . : ..: :. : ..: ::.::
NP_620 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAG-LAVMAVGIWTLALKSDYISLLASGTYLA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGL
. .: ..::.:.. ::..: :. : : . ::. :
NP_620 TAY---IL----VVAGTVVMVTGVLGCCATFKERRNLL----RLYFILLLIIFL-----L
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGY
..: :: : .:. :.:.: ... : . ::: . ::.:: ..:::: ..
NP_620 EIIAGILAYAYYQQLNTELKENLKDTMT--KRYHQPGHEAVTSAVDQLQQEFHCCGSNNS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 KDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSY
.:: .:. :. . : : : : ..: .:
NP_620 QDWRDSEWIRSQ--EAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEH
170 180 190 200 210
240 250 260 270 280 290
pF1KB8 AHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALE
NP_620 LRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY
220 230 240 250
>>NP_001034579 (OMIM: 179620,602243,609057) CD151 antige (253 aa)
initn: 143 init1: 116 opt: 167 Z-score: 194.4 bits: 44.0 E(85289): 0.00044
Smith-Waterman score: 184; 29.0% identity (52.7% similar) in 186 aa overlap (21-206:27-191)
10 20 30 40 50
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLA
.:: . : ..: :. : ..: ::.::
NP_001 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAG-LAVMAVGIWTLALKSDYISLLASGTYLA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGL
. .: ..::.:.. ::..: :. : : . ::. :
NP_001 TAY---IL----VVAGTVVMVTGVLGCCATFKERRNLL----RLYFILLLIIFL-----L
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGY
..: :: : .:. :.:.: ... : . ::: . ::.:: ..:::: ..
NP_001 EIIAGILAYAYYQQLNTELKENLKDTMT--KRYHQPGHEAVTSAVDQLQQEFHCCGSNNS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 KDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSY
.:: .:. :. . : : : : ..: .:
NP_001 QDWRDSEWIRSQ--EAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEH
170 180 190 200 210
240 250 260 270 280 290
pF1KB8 AHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALE
NP_001 LRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY
220 230 240 250
>>NP_004348 (OMIM: 179620,602243,609057) CD151 antigen [ (253 aa)
initn: 143 init1: 116 opt: 167 Z-score: 194.4 bits: 44.0 E(85289): 0.00044
Smith-Waterman score: 184; 29.0% identity (52.7% similar) in 186 aa overlap (21-206:27-191)
10 20 30 40 50
pF1KB8 MAPVLPLVLPLQPRIRLAQGLWLLSWLLALAGGVILLCSGHLLVQLRHLGTFLA
.:: . : ..: :. : ..: ::.::
NP_004 MGEFNEKKTTCGTVCLKYLLFTYNCCFWLAG-LAVMAVGIWTLALKSDYISLLASGTYLA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PSCQFPVLPQAALAAGAVALGTGLVGVGASRASLNAALYPPWRGVLGPLLVAGTAGGGGL
. .: ..::.:.. ::..: :. : : . ::. :
NP_004 TAY---IL----VVAGTVVMVTGVLGCCATFKERRNLL----RLYFILLLIIFL-----L
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LVVALGLALALPGSLDEALEEGLVTALAHYKDTEVPGHCQAKRLVDELQLRYHCCGRHGY
..: :: : .:. :.:.: ... : . ::: . ::.:: ..:::: ..
NP_004 EIIAGILAYAYYQQLNTELKENLKDTMT--KRYHQPGHEAVTSAVDQLQQEFHCCGSNNS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 KDWFGVQWVSSRYLDPGDRDVADRIQSNVEGLYLTDGVPFSCCNPHSPRPCLQNRLSDSY
.:: .:. :. . : : : : ..: .:
NP_004 QDWRDSEWIRSQ--EAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFIQEH
170 180 190 200 210
240 250 260 270 280 290
pF1KB8 AHPLFDPRQPNQNLWAQGCHEVLLEHLQDLAGTLGSMLAVTFLLQALVLLGLRYLQTALE
NP_004 LRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY
220 230 240 250
351 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:32:24 2016 done: Fri Nov 4 10:32:25 2016
Total Scan time: 7.740 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]