Result of FASTA (omim) for
pFN21AB8169
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8169, 332 aa
1>>>pF1KB8169 332 - 332 aa - 332 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4535+/-0.000272; mu= 12.6115+/- 0.017
mean_var=112.5560+/-22.770, 0's: 0 Z-trim(121.7): 26 B-trim: 2196 in 1/55
Lambda= 0.120890
statistics sampled from 38659 (38686) to 38659 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.454), width: 16
Scan time: 7.230
The best scores are: opt bits E(85289)
NP_659480 (OMIM: 608933) endonuclease 8-like 2 iso ( 332) 2329 416.2 4.9e-116
NP_001129218 (OMIM: 608933) endonuclease 8-like 2 ( 332) 2329 416.2 4.9e-116
XP_016868790 (OMIM: 608933) PREDICTED: endonucleas ( 271) 1916 344.1 2e-94
XP_005272440 (OMIM: 608933) PREDICTED: endonucleas ( 271) 1916 344.1 2e-94
XP_005272439 (OMIM: 608933) PREDICTED: endonucleas ( 271) 1916 344.1 2e-94
NP_001129219 (OMIM: 608933) endonuclease 8-like 2 ( 271) 1916 344.1 2e-94
NP_001129220 (OMIM: 608933) endonuclease 8-like 2 ( 216) 1206 220.2 3.2e-57
XP_016863849 (OMIM: 608934) PREDICTED: endonucleas ( 503) 217 48.0 5.2e-05
NP_060718 (OMIM: 608934) endonuclease 8-like 3 [Ho ( 605) 217 48.0 6e-05
XP_006720742 (OMIM: 608844) PREDICTED: endonucleas ( 433) 174 40.4 0.0083
>>NP_659480 (OMIM: 608933) endonuclease 8-like 2 isoform (332 aa)
initn: 2329 init1: 2329 opt: 2329 Z-score: 2204.2 bits: 416.2 E(85289): 4.9e-116
Smith-Waterman score: 2329; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:1-332)
10 20 30 40 50 60
pF1KB8 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
250 260 270 280 290 300
310 320 330
pF1KB8 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
::::::::::::::::::::::::::::::::
NP_659 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
310 320 330
>>NP_001129218 (OMIM: 608933) endonuclease 8-like 2 isof (332 aa)
initn: 2329 init1: 2329 opt: 2329 Z-score: 2204.2 bits: 416.2 E(85289): 4.9e-116
Smith-Waterman score: 2329; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:1-332)
10 20 30 40 50 60
pF1KB8 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
250 260 270 280 290 300
310 320 330
pF1KB8 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
::::::::::::::::::::::::::::::::
NP_001 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
310 320 330
>>XP_016868790 (OMIM: 608933) PREDICTED: endonuclease 8- (271 aa)
initn: 1916 init1: 1916 opt: 1916 Z-score: 1816.2 bits: 344.1 E(85289): 2e-94
Smith-Waterman score: 1916; 100.0% identity (100.0% similar) in 271 aa overlap (62-332:1-271)
40 50 60 70 80 90
pF1KB8 LQPASLQSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGE
::::::::::::::::::::::::::::::
XP_016 MGPPGSSPTPEPPQKEVQKEGAADPKQVGE
10 20 30
100 110 120 130 140 150
pF1KB8 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
220 230 240 250 260 270
pF1KB8 S
:
XP_016 S
>>XP_005272440 (OMIM: 608933) PREDICTED: endonuclease 8- (271 aa)
initn: 1916 init1: 1916 opt: 1916 Z-score: 1816.2 bits: 344.1 E(85289): 2e-94
Smith-Waterman score: 1916; 100.0% identity (100.0% similar) in 271 aa overlap (62-332:1-271)
40 50 60 70 80 90
pF1KB8 LQPASLQSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGE
::::::::::::::::::::::::::::::
XP_005 MGPPGSSPTPEPPQKEVQKEGAADPKQVGE
10 20 30
100 110 120 130 140 150
pF1KB8 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
220 230 240 250 260 270
pF1KB8 S
:
XP_005 S
>>XP_005272439 (OMIM: 608933) PREDICTED: endonuclease 8- (271 aa)
initn: 1916 init1: 1916 opt: 1916 Z-score: 1816.2 bits: 344.1 E(85289): 2e-94
Smith-Waterman score: 1916; 100.0% identity (100.0% similar) in 271 aa overlap (62-332:1-271)
40 50 60 70 80 90
pF1KB8 LQPASLQSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGE
::::::::::::::::::::::::::::::
XP_005 MGPPGSSPTPEPPQKEVQKEGAADPKQVGE
10 20 30
100 110 120 130 140 150
pF1KB8 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
220 230 240 250 260 270
pF1KB8 S
:
XP_005 S
>>NP_001129219 (OMIM: 608933) endonuclease 8-like 2 isof (271 aa)
initn: 1916 init1: 1916 opt: 1916 Z-score: 1816.2 bits: 344.1 E(85289): 2e-94
Smith-Waterman score: 1916; 100.0% identity (100.0% similar) in 271 aa overlap (62-332:1-271)
40 50 60 70 80 90
pF1KB8 LQPASLQSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPTPEPPQKEVQKEGAADPKQVGE
::::::::::::::::::::::::::::::
NP_001 MGPPGSSPTPEPPQKEVQKEGAADPKQVGE
10 20 30
100 110 120 130 140 150
pF1KB8 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKK
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALG
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQF
220 230 240 250 260 270
pF1KB8 S
:
NP_001 S
>>NP_001129220 (OMIM: 608933) endonuclease 8-like 2 isof (216 aa)
initn: 1201 init1: 1201 opt: 1206 Z-score: 1148.3 bits: 220.2 E(85289): 3.2e-57
Smith-Waterman score: 1271; 65.1% identity (65.1% similar) in 332 aa overlap (1-332:1-216)
10 20 30 40 50 60
pF1KB8 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDE
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQV-------------
10 20 30 40
70 80 90 100 110 120
pF1KB8 EMGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER
NP_001 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB8 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNC
:::::::::::::::::
NP_001 -------------------------------------------RLVLHFGGGGFLAFYNC
50 60
190 200 210 220 230 240
pF1KB8 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYR
70 80 90 100 110 120
250 260 270 280 290 300
pF1KB8 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKE
130 140 150 160 170 180
310 320 330
pF1KB8 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
::::::::::::::::::::::::::::::::
NP_001 AFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
190 200 210
>>XP_016863849 (OMIM: 608934) PREDICTED: endonuclease 8- (503 aa)
initn: 197 init1: 138 opt: 217 Z-score: 211.0 bits: 48.0 E(85289): 5.2e-05
Smith-Waterman score: 217; 24.5% identity (53.3% similar) in 212 aa overlap (131-331:92-292)
110 120 130 140 150 160
pF1KB8 SSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRD
::. ::. : . .: . : .
XP_016 QNVLSLFNGYVYSGVETLGKELFMYFGPKALRIHFGMKGFIMINPLEYKYKNGA------
70 80 90 100 110
170 180 190 200 210
pF1KB8 PSPRLVLHFGGGGFLAFYNCQL----SWSSSPVVT--PTCDILSEKFH--RGQALEALGQ
:: : ... .. :.. .. : :. . :. : .: :... .
XP_016 -SPVLEVQLTKD-LICFFDSSVELRNSMESQQRIRMMKELDVCSPEFSFLRAESEVKKQK
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB8 AQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWL
.. . .:.:: . :.:::::::::. .:.:: :. . . :. . .:: .
XP_016 GRMLGDVLMDQNVLPGVGNIIKNEALFDSGLHPAVKVCQLTDEQIHHLMKMIRDFSILFY
180 190 200 210 220 230
280 290 300 310 320
pF1KB8 QGKFQGRP--QHTQVYQKEQCPAGH-QVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQC
. . : .: .::.. .: : .. :: .. :.:..::.:: . .. . :
XP_016 RCRKAGLALSKHYKVYKRPNCGQCHCRITVCRFGDNN---RMTYFCPHCQKENPQHVDIC
240 250 260 270 280 290
330
pF1KB8 QFS
..
XP_016 KLPTRNTIISWTSSRVDHVMDSVARKSEEHWTCVVCTLINKPSSKACDACLTSRPIDSVL
300 310 320 330 340 350
>>NP_060718 (OMIM: 608934) endonuclease 8-like 3 [Homo s (605 aa)
initn: 173 init1: 138 opt: 217 Z-score: 209.9 bits: 48.0 E(85289): 6e-05
Smith-Waterman score: 217; 24.5% identity (53.3% similar) in 212 aa overlap (131-331:92-292)
110 120 130 140 150 160
pF1KB8 SSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRD
::. ::. : . .: . : .
NP_060 QNVLSLFNGYVYSGVETLGKELFMYFGPKALRIHFGMKGFIMINPLEYKYKNGA------
70 80 90 100 110
170 180 190 200 210
pF1KB8 PSPRLVLHFGGGGFLAFYNCQL----SWSSSPVVT--PTCDILSEKFH--RGQALEALGQ
:: : ... .. :.. .. : :. . :. : .: :... .
NP_060 -SPVLEVQLTKD-LICFFDSSVELRNSMESQQRIRMMKELDVCSPEFSFLRAESEVKKQK
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB8 AQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWL
.. . .:.:: . :.:::::::::. .:.:: :. . . :. . .:: .
NP_060 GRMLGDVLMDQNVLPGVGNIIKNEALFDSGLHPAVKVCQLTDEQIHHLMKMIRDFSILFY
180 190 200 210 220 230
280 290 300 310 320
pF1KB8 QGKFQGRP--QHTQVYQKEQCPAGH-QVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQC
. . : .: .::.. .: : .. :: .. :.:..::.:: . .. . :
NP_060 RCRKAGLALSKHYKVYKRPNCGQCHCRITVCRFGDNN---RMTYFCPHCQKENPQHVDIC
240 250 260 270 280 290
330
pF1KB8 QFS
..
NP_060 KLPTRNTIISWTSSRVDHVMDSVARKSEEHWTCVVCTLINKPSSKACDACLTSRPIDSVL
300 310 320 330 340 350
>>XP_006720742 (OMIM: 608844) PREDICTED: endonuclease 8- (433 aa)
initn: 186 init1: 108 opt: 174 Z-score: 171.4 bits: 40.4 E(85289): 0.0083
Smith-Waterman score: 178; 27.3% identity (51.0% similar) in 245 aa overlap (31-254:13-243)
10 20 30 40 50
pF1KB8 MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLW---LQDTQVHGKKLFLRFD
.::: .. : :. ...::.: : .
XP_006 MRSVSEGSREEVRLQPRPRKD-WDFRLNAVEAHGRKRTLPPS
10 20 30 40
60 70 80 90 100
pF1KB8 LDEEMGPP---GSSPTPEPPQKEV-----QKEGAADPKQVGEPSGQKTLDGSSRSAEL--
: :: .:. . : . : .: ... .: :. ...:.:. ::
XP_006 LRMPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRL
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB8 ----VPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGSVW-VNDFSRAKKANKRGDWRDPS
.: .. ..: : : ::. :: : ..:. : :.
XP_006 ILSPLPGAQPQQEPLA-----------LVFRFGMSGSFQLVPREELPRHAHLRFYTAPPG
110 120 130 140 150
170 180 190 200 210 220
pF1KB8 PRLVLHFGGGGFLAFYNCQLSWSSS--PVVTPTCDILSEKFHRGQALEALGQAQPVCYTL
:::.: : .. .. .:. . : : . . :. :. : .:. . :.: .:
XP_006 PRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDR--PICEAL
160 170 180 190 200
230 240 250 260 270
pF1KB8 LDQRYFSGLGNIIKNEALYRAGIHPLSLG-SVLSASRREVLVDHVVEFSTAWLQGKFQGR
::::.:.:.:: .. : ::: : :. . ::: :
XP_006 LDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDL
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB8 PQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
XP_006 LELCHSVPKEVVQLGGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDP
270 280 290 300 310 320
332 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:11:39 2016 done: Fri Nov 4 10:11:40 2016
Total Scan time: 7.230 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]