(Circular) (Six-base) MAPSORT of: pFN21AB7448.seq Check: 1009 from: 1 to: 5677 pFN21AB7448 5677 bp With 182 enzymes: SgfI * January 16, 2009 15:26 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3487 278 Size: 53 83 186 936 1951 2468 Fragments arranged by size: 2468 1951 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3020 1937 Size: 1083 4594 Acc65I G'GTAC_C Cuts at: 2248 2998 2248 Size: 750 4927 AclI AA'CG_TT Cuts at: 1563 3804 4177 1563 Size: 2241 373 3063 Fragments arranged by size: 3063 2241 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3740 5124 5392 1632 Size: 2108 1384 268 1917 Fragments arranged by size: 2108 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5480 AflIII A'CryG_T Cuts at: 1203 2735 4576 5553 1203 Size: 1532 1841 977 1327 Fragments arranged by size: 1841 1532 1327 977 AgeI A'CCGG_T Cuts at: 4508 4508 Size: 5677 AhdI GACnn_n'nnGTC Cuts at: 4406 4406 Size: 5677 AleI CACnn'nnGTG Cuts at: 1166 2342 2837 1166 Size: 1176 495 4006 Fragments arranged by size: 4006 1176 495 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5677 AlwNI CAG_nnn'CTG Cuts at: 3420 4992 3420 Size: 1572 4105 ApaLI G'TGCA_C Cuts at: 3734 4890 3734 Size: 1156 4521 ApoI r'AATT_y Cuts at: 1493 2418 2986 3212 3364 5473 1493 Size: 925 568 226 152 2109 1697 Fragments arranged by size: 2109 1697 925 568 226 152 AseI AT'TA_AT Cuts at: 160 1032 4231 160 Size: 872 3199 1606 Fragments arranged by size: 3199 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5677 AvaI C'yCGr_G Cuts at: 1870 1943 2275 3002 1870 Size: 73 332 727 4545 Fragments arranged by size: 4545 727 332 73 BamHI G'GATC_C Cuts at: 3007 3374 3007 Size: 367 5310 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2248 2998 4453 618 Size: 325 217 627 461 750 1455 1842 Fragments arranged by size: 1842 1455 750 627 461 325 217 BanII G_rGCy'C Cuts at: 1391 2190 2642 2996 1391 Size: 799 452 354 4072 Fragments arranged by size: 4072 799 452 354 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4706 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3868 3902 1903 Size: 34 50 34 1847 34 3678 Fragments arranged by size: 3678 1847 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2075 3569 4779 2075 Size: 1494 1210 2973 Fragments arranged by size: 2973 1494 1210 BclI T'GATC_A Cuts at: 1548 2862 1548 Size: 1314 4363 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4288 136 Size: 107 122 71 631 605 2616 1525 Fragments arranged by size: 2616 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5672 5672 Size: 5677 BlpI GC'TnA_GC Cuts at: 3094 3094 Size: 5677 Bme1580I G_kGCm'C Cuts at: 1790 2598 2826 3738 4894 1790 Size: 808 228 912 1156 2573 Fragments arranged by size: 2573 1156 912 808 228 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5677 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3408 4366 442 Size: 416 53 83 399 24 1991 958 1753 Fragments arranged by size: 1991 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2849 1056 Size: 1793 3884 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2939 4337 1239 Size: 1700 1398 2579 Fragments arranged by size: 2579 1700 1398 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2415 3802 4667 4965 2415 Size: 1387 865 298 3127 Fragments arranged by size: 3127 1387 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4340 882 Size: 617 2841 2219 Fragments arranged by size: 2841 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2860 3468 493 Size: 711 1656 608 2702 Fragments arranged by size: 2702 1656 711 608 BsaBI GATnn'nnATC Cuts at: 5671 5671 Size: 5677 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3484 3866 4501 275 Size: 53 83 186 936 1951 382 635 1451 Fragments arranged by size: 1951 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4110 4508 4782 4929 5340 4110 Size: 398 274 147 411 4447 Fragments arranged by size: 4447 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5452 Fragments arranged by size: 5452 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2230 2692 1186 Size: 1044 462 4171 Fragments arranged by size: 4171 1044 462 BseYI C'CCAG_C Cuts at: 2008 2440 2597 2869 4880 5376 2008 Size: 432 157 272 2011 496 2309 Fragments arranged by size: 2309 2011 496 432 272 157 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5104 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3127 3888 4916 1540 Size: 275 186 1126 761 1028 2301 Fragments arranged by size: 2301 1126 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3738 3823 4894 3738 Size: 85 1071 4521 Fragments arranged by size: 4521 1071 85 BsmI GAATG_Cn' Cuts at: 3188 3281 3188 Size: 93 5584 BsmBI CGTCTCn'nnnn_ Cuts at: 2342 2342 Size: 5677 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2190 2598 2642 2826 2996 3738 3823 Size: 399 400 408 44 184 170 742 85 Cuts at: 3823 4894 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 408 400 399 184 170 85 44 BspEI T'CCGG_A Cuts at: 5340 5340 Size: 5677 BspHI T'CATG_A Cuts at: 2481 3566 5296 2481 Size: 1085 1730 2862 Fragments arranged by size: 2862 1730 1085 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3032 844 Size: 2188 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3564 1394 Size: 429 1741 3507 Fragments arranged by size: 3507 1741 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2655 4172 4346 65 Size: 1183 1407 1517 174 1396 Fragments arranged by size: 1517 1407 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4321 4508 1700 Size: 110 2511 187 2869 Fragments arranged by size: 2869 2511 187 110 BsrGI T'GTAC_A Cuts at: 96 2118 96 Size: 2022 3655 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5677 BssSI C'ACGA_G Cuts at: 3737 4749 3737 Size: 1012 4665 BstAPI GCAn_nnn'nTGC Cuts at: 794 2271 794 Size: 1477 4200 BstBI TT'CG_AA Cuts at: 4481 4481 Size: 5677 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5677 BstXI CCAn_nnnn'nTGG Cuts at: 2344 2496 2344 Size: 152 5525 BstYI r'GATC_y Cuts at: 1972 3007 3374 3759 3776 5228 5314 5326 5672 Size: 1035 367 385 17 1452 86 12 346 Cuts at: 5672 1972 Size: 1977 Fragments arranged by size: 1977 1452 1035 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2244 2367 513 Size: 552 1179 123 3823 Fragments arranged by size: 3823 1179 552 123 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4938 Fragments arranged by size: 4938 683 56 BtsI GCAGTG_nn' Cuts at: 3193 3987 4007 3193 Size: 794 20 4863 Fragments arranged by size: 4863 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5677 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5642 DraI TTT'AAA Cuts at: 2880 2981 2880 Size: 101 5576 DraIII CAC_nnn'GTG Cuts at: 2111 2111 Size: 5677 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4684 809 Size: 507 3368 1802 Fragments arranged by size: 3368 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2454 2568 3124 Size: 54 1425 50 275 18 624 114 556 Cuts at: 3124 4013 5642 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 624 556 275 114 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3124 1537 Size: 275 1312 4090 Fragments arranged by size: 4090 1312 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3607 1353 Size: 2254 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4264 4638 4784 387 Size: 1064 138 2675 374 146 1280 Fragments arranged by size: 2675 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2939 3740 4337 5124 5392 1239 Size: 393 1307 801 597 787 268 1524 Fragments arranged by size: 1524 1307 801 787 597 393 268 EcoRI G'AATT_C Cuts at: 2418 2986 3364 2418 Size: 568 378 4731 Fragments arranged by size: 4731 568 378 FspI TGC'GCA Cuts at: 4183 4183 Size: 5677 HaeII r_GCGC'y Cuts at: 1678 4824 1678 Size: 3146 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2491 2494 2523 2526 2687 Size: 32 135 32 919 3 29 3 161 Cuts at: 2687 2719 4318 4350 4392 4424 1373 Size: 32 1599 32 42 32 2626 Fragments arranged by size: 2626 1599 919 161 135 42 32 32 32 32 32 29 3 3 HincII GTy'rAC Cuts at: 669 1657 1938 3021 3267 669 Size: 988 281 1083 246 3079 Fragments arranged by size: 3079 1083 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5677 HpaI GTT'AAC Cuts at: 3267 3267 Size: 5677 KpnI G_GTAC'C Cuts at: 2252 3002 2252 Size: 750 4927 MfeI C'AATT_G Cuts at: 2912 3276 2912 Size: 364 5313 MluI A'CGCG_T Cuts at: 5553 5553 Size: 5677 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2477 2988 4791 4975 1305 Size: 1172 511 1803 184 2007 Fragments arranged by size: 2007 1803 1172 511 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2570 10 Size: 54 1425 343 738 3117 Fragments arranged by size: 3117 1425 738 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2231 2315 2342 2480 2837 3635 3994 Size: 648 1065 84 27 138 357 798 359 Cuts at: 3994 4153 518 Size: 159 2042 Fragments arranged by size: 2042 1065 798 648 359 357 159 138 84 27 MspA1I CmG'CkG Cuts at: 1606 2342 3093 3770 4918 5163 1606 Size: 736 751 677 1148 245 2120 Fragments arranged by size: 2120 1148 751 736 677 245 NcoI C'CATG_G Cuts at: 513 1065 2367 513 Size: 552 1302 3823 Fragments arranged by size: 3823 1302 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5677 NheI G'CTAG_C Cuts at: 1052 2845 1052 Size: 1793 3884 NotI GC'GGCC_GC Cuts at: 3124 3124 Size: 5677 NspI r_CATG'y Cuts at: 1132 1229 2583 2739 3035 4580 1132 Size: 97 1354 156 296 1545 2229 Fragments arranged by size: 2229 1545 1354 296 156 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5677 PciI A'CATG_T Cuts at: 2735 4576 2735 Size: 1841 3836 PflMI CCAn_nnn'nTGG Cuts at: 1108 2032 1108 Size: 924 4753 PmeI GTTT'AAAC Cuts at: 2981 2981 Size: 5677 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3746 3778 5259 5291 3746 Size: 32 1481 32 4132 Fragments arranged by size: 4132 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5677 PsiI TTA'TAA Cuts at: 3247 3247 Size: 5677 PstI C_TGCA'G Cuts at: 830 3029 830 Size: 2199 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5677 PvuII CAG'CTG Cuts at: 2342 2342 Size: 5677 SalI G'TCGA_C Cuts at: 1936 3019 1936 Size: 1083 4594 SbfI CC_TGCA'GG Cuts at: 3029 3029 Size: 5677 ScaI AGT'ACT Cuts at: 3925 5637 3925 Size: 1712 3965 SfcI C'TryA_G Cuts at: 826 1045 2608 3025 4160 4841 5032 826 Size: 219 1563 417 1135 681 191 1471 Fragments arranged by size: 1563 1471 1135 681 417 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5677 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5677 SmaI CCC'GGG Cuts at: 1872 3004 1872 Size: 1132 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2430 3781 4682 4944 820 Size: 197 926 487 1351 901 262 1553 Fragments arranged by size: 1553 1351 926 901 487 262 197 SnaBI TAC'GTA Cuts at: 493 3468 493 Size: 2975 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5677 SphI G_CATG'C Cuts at: 1132 3035 1132 Size: 1903 3774 SspI AAT'ATT Cuts at: 5 52 3601 5 Size: 47 3549 2081 Fragments arranged by size: 3549 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5677 StyI C'CwwG_G Cuts at: 513 1065 2367 3116 513 Size: 552 1302 749 3074 Fragments arranged by size: 3074 1302 749 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2849 3704 3721 3874 4059 4504 325 Size: 1255 1269 855 17 153 185 445 1498 Fragments arranged by size: 1498 1269 1255 855 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2118 2766 3923 Size: 274 80 33 51 1443 141 648 1157 Cuts at: 3923 5635 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1157 648 274 141 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2866 2898 5637 5669 2866 Size: 32 2739 32 2874 Fragments arranged by size: 2874 2739 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5677 XbaI T'CTAG_A Cuts at: 3013 3013 Size: 5677 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2914 2914 Size: 5677 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5677 XmaI C'CCGG_G Cuts at: 1870 3002 1870 Size: 1132 4545 XmnI GAAnn'nnTTC Cuts at: 3806 3806 Size: 5677 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3485 276 Size: 53 83 186 936 1951 2468 Fragments arranged by size: 2468 1951 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BstZ17I Bsu36I EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI