Result of FASTA (ccds) for
pFN21AB7441
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7441, 215 aa
1>>>pF1KB7441 215 - 215 aa - 215 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3484+/-0.000813; mu= 13.4821+/- 0.049
mean_var=64.5088+/-12.788, 0's: 0 Z-trim(106.7): 26 B-trim: 0 in 0/49
Lambda= 0.159685
statistics sampled from 9140 (9154) to 9140 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.281), width: 16
Scan time: 2.040
The best scores are: opt bits E(32554)
CCDS1468.1 IL19 gene_id:29949|Hs108|chr1 ( 215) 1472 347.6 3.6e-96
CCDS1469.1 IL19 gene_id:29949|Hs108|chr1 ( 177) 1184 281.2 2.9e-76
CCDS1470.1 IL20 gene_id:50604|Hs108|chr1 ( 176) 457 113.7 7.4e-26
CCDS1471.1 IL24 gene_id:11009|Hs108|chr1 ( 206) 247 65.3 3.1e-11
CCDS53465.1 IL24 gene_id:11009|Hs108|chr1 ( 207) 247 65.3 3.1e-11
>>CCDS1468.1 IL19 gene_id:29949|Hs108|chr1 (215 aa)
initn: 1472 init1: 1472 opt: 1472 Z-score: 1840.1 bits: 347.6 E(32554): 3.6e-96
Smith-Waterman score: 1472; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KB7 MCTEGAFPHRSACSLPLTHVHTHIHVCVPVLWGSVPRGMKLQCVSLWLLGTILILCSVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MCTEGAFPHRSACSLPLTHVHTHIHVCVPVLWGSVPRGMKLQCVSLWLLGTILILCSVDN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HGLRRCLISTDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVCCVTKNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HGLRRCLISTDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVCCVTKNLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AFYVDRVFKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AFYVDRVFKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHD
130 140 150 160 170 180
190 200 210
pF1KB7 NYDQLEVHAAAIKSLGELDVFLAWINKNHEVMFSA
:::::::::::::::::::::::::::::::::::
CCDS14 NYDQLEVHAAAIKSLGELDVFLAWINKNHEVMFSA
190 200 210
>>CCDS1469.1 IL19 gene_id:29949|Hs108|chr1 (177 aa)
initn: 1184 init1: 1184 opt: 1184 Z-score: 1482.8 bits: 281.2 E(32554): 2.9e-76
Smith-Waterman score: 1184; 100.0% identity (100.0% similar) in 177 aa overlap (39-215:1-177)
10 20 30 40 50 60
pF1KB7 HRSACSLPLTHVHTHIHVCVPVLWGSVPRGMKLQCVSLWLLGTILILCSVDNHGLRRCLI
::::::::::::::::::::::::::::::
CCDS14 MKLQCVSLWLLGTILILCSVDNHGLRRCLI
10 20 30
70 80 90 100 110 120
pF1KB7 STDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVCCVTKNLLAFYVDRVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 STDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVCCVTKNLLAFYVDRVF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 KDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVH
100 110 120 130 140 150
190 200 210
pF1KB7 AAAIKSLGELDVFLAWINKNHEVMFSA
:::::::::::::::::::::::::::
CCDS14 AAAIKSLGELDVFLAWINKNHEVMFSA
160 170
>>CCDS1470.1 IL20 gene_id:50604|Hs108|chr1 (176 aa)
initn: 436 init1: 403 opt: 457 Z-score: 577.7 bits: 113.7 E(32554): 7.4e-26
Smith-Waterman score: 457; 40.2% identity (72.4% similar) in 174 aa overlap (39-207:1-174)
10 20 30 40 50 60
pF1KB7 HRSACSLPLTHVHTHIHVCVPVLWGSVPRGMKLQCVSLWLLGTILILCSVDNHGLRR---
:: . ... ::.. . : . . ::.
CCDS14 MKASSLAFSLLSAAFYLLWTPSTGLKTLNL
10 20 30
70 80 90 100 110 120
pF1KB7 --CLISTDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVCCVTKNLLAFY
:.:.:....:...:.::. ..:::: .. :: :.:: :: . ::. ..:: .:
CCDS14 GSCVIATNLQEIRNGFSEIRGSVQAKDGNIDIRILRRTESLQDTKPANRCCLLRHLLRLY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 VDRVFKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYD
.:::::..: :. ::::::.::::: ..: :: :. . ::: .:: . : ....
CCDS14 LDRVFKNYQTPDHYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMKKYSQILSHFE
100 110 120 130 140 150
190 200 210
pF1KB7 QLEVHAAAIKSLGELDVFLAWINKNHEVMFSA
.:: .::..:.:::::..: :...
CCDS14 KLEPQAAVVKALGELDILLQWMEETE
160 170
>>CCDS1471.1 IL24 gene_id:11009|Hs108|chr1 (206 aa)
initn: 214 init1: 127 opt: 247 Z-score: 315.2 bits: 65.3 E(32554): 3.1e-11
Smith-Waterman score: 247; 28.4% identity (65.8% similar) in 190 aa overlap (27-207:18-202)
10 20 30 40 50
pF1KB7 MCTEGAFPHRSACSLPLTHVHTHIHVCVPVLWGSVPRGMKLQCVSLWLLG-TILILCSVD
: :.: . ..: : : :: :.:. .:.
CCDS14 MNFQQRLQSLWTLARPFCPPLL----ATASQMQMVVLPCLGFTLLLWSQVS
10 20 30 40
60 70 80 90 100 110
pF1KB7 N-HGLRR----CLISTDM-HHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVC
. .: . : .. . ... :.: .: ..::.:.. .. .:. :.:: .. . :
CCDS14 GAQGQEFHFGPCQVKGVVPQKLWEAFWAVKDTMQAQDNITSARLLQQ-EVLQNVSDAESC
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 CVTKNLLAFYVDRVFKDHQEPNPKI--LRKISSIANSFLYMQKTLRQCQEQRQCHCRQEA
....:: ::. :::.... . .. :...:..::.:. . . :. ::... :. :
CCDS14 YLVHTLLEFYLKTVFKNYHNRTVEVRTLKSFSTLANNFVLIVSQLQPSQENEMFSIRDSA
110 120 130 140 150 160
180 190 200 210
pF1KB7 TNATRVIHDNYDQLEVHAAAIKSLGELDVFLAWINKNHEVMFSA
... . ::.:.:: :.:::.:..:.:..:
CCDS14 HRRFLLFRRAFKQLDVEAALTKALGEVDILLTWMQKFYKL
170 180 190 200
>>CCDS53465.1 IL24 gene_id:11009|Hs108|chr1 (207 aa)
initn: 216 init1: 127 opt: 247 Z-score: 315.1 bits: 65.3 E(32554): 3.1e-11
Smith-Waterman score: 247; 28.4% identity (65.8% similar) in 190 aa overlap (27-207:19-203)
10 20 30 40 50
pF1KB7 MCTEGAFPHRSACSLPLTHVHTHIHVCVPVLWGSVPRGMKLQCVSLWLLG-TILILCSVD
: :.: . ..: : : :: :.:. .:.
CCDS53 MNFQQRLQSLWTLASRPFCPPLL----ATASQMQMVVLPCLGFTLLLWSQVS
10 20 30 40
60 70 80 90 100 110
pF1KB7 N-HGLRR----CLISTDM-HHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVC
. .: . : .. . ... :.: .: ..::.:.. .. .:. :.:: .. . :
CCDS53 GAQGQEFHFGPCQVKGVVPQKLWEAFWAVKDTMQAQDNITSARLLQQ-EVLQNVSDAESC
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 CVTKNLLAFYVDRVFKDHQEPNPKI--LRKISSIANSFLYMQKTLRQCQEQRQCHCRQEA
....:: ::. :::.... . .. :...:..::.:. . . :. ::... :. :
CCDS53 YLVHTLLEFYLKTVFKNYHNRTVEVRTLKSFSTLANNFVLIVSQLQPSQENEMFSIRDSA
110 120 130 140 150 160
180 190 200 210
pF1KB7 TNATRVIHDNYDQLEVHAAAIKSLGELDVFLAWINKNHEVMFSA
... . ::.:.:: :.:::.:..:.:..:
CCDS53 HRRFLLFRRAFKQLDVEAALTKALGEVDILLTWMQKFYKL
170 180 190 200
215 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:50:46 2016 done: Fri Nov 4 07:50:47 2016
Total Scan time: 2.040 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]