FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7372, 295 aa 1>>>pF1KB7372 295 - 295 aa - 295 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3888+/-0.00105; mu= 15.4197+/- 0.063 mean_var=77.5593+/-15.695, 0's: 0 Z-trim(104.5): 75 B-trim: 0 in 0/50 Lambda= 0.145632 statistics sampled from 7893 (7955) to 7893 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.244), width: 16 Scan time: 2.260 The best scores are: opt bits E(32554) CCDS8203.1 RNF121 gene_id:55298|Hs108|chr11 ( 327) 2034 437.0 9e-123 CCDS47149.1 RNF175 gene_id:285533|Hs108|chr4 ( 328) 1619 349.8 1.6e-96 CCDS73343.1 RNF121 gene_id:55298|Hs108|chr11 ( 205) 1191 259.7 1.3e-69 >>CCDS8203.1 RNF121 gene_id:55298|Hs108|chr11 (327 aa) initn: 2034 init1: 2034 opt: 2034 Z-score: 2317.6 bits: 437.0 E(32554): 9e-123 Smith-Waterman score: 2034; 100.0% identity (100.0% similar) in 294 aa overlap (2-295:34-327) 10 20 30 pF1KB7 MRVEHARMHAKHRGHEAMHAEMVLILIATLV :::::::::::::::::::::::::::::: CCDS82 VVEVEVGGGAAGERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILIATLV 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB7 VAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 VAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRAT 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB7 RKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 RKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLL 130 140 150 160 170 180 160 170 180 190 200 210 pF1KB7 FYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 FYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGII 190 200 210 220 230 240 220 230 240 250 260 270 pF1KB7 ENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWL 250 260 270 280 290 300 280 290 pF1KB7 RYLVAWQPVIIGVVQGINYILGLE :::::::::::::::::::::::: CCDS82 RYLVAWQPVIIGVVQGINYILGLE 310 320 >>CCDS47149.1 RNF175 gene_id:285533|Hs108|chr4 (328 aa) initn: 1619 init1: 1619 opt: 1619 Z-score: 1846.4 bits: 349.8 E(32554): 1.6e-96 Smith-Waterman score: 1619; 73.4% identity (91.8% similar) in 293 aa overlap (3-295:36-328) 10 20 30 pF1KB7 MRVEHARMHAKHRGHEAMHAEMVLILIATLVV ... ::. ::::..::.::.::.. .::. CCDS47 AARKAAPVLEAPPQQEQLSHTKLSAEDTWNLQQERMYKMHRGHDSMHVEMILIFLCVLVI 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB7 AQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRATR ::..::::.::: ::::.:::.::::::::::.::.::::: .: .::..:... ::::: CCDS47 AQIVLVQWRQRHGRSYNLVTLLQMWVVPLYFTIKLYWWRFLSMWGMFSVITSYILFRATR 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB7 KPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLF ::: ::::::::::::::.::: :.:::.:.:::. :.::.:::: .:.::::: :: CCDS47 KPLSGRTPRLVYKWFLLIYKLSYAFGVVGYLAIMFTMCGFNLFFKIKARDSMDFGIVSLF 130 140 150 160 170 180 160 170 180 190 200 210 pF1KB7 YGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGIIE :::::::. :::::.:.::::::::::: : .::. :::..::::::.:.:...:::.:: CCDS47 YGLYYGVMGRDFAEICSDYMASTIGFYSVSRLPTRSLSDNICAVCGQKIIVELDEEGLIE 190 200 210 220 230 240 220 230 240 250 260 270 pF1KB7 NTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLR :::.::::::::::::::::::::::::::::::::::::.:::::: : .:::.::::: CCDS47 NTYQLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMISNPWERTHFLYGQILDWLR 250 260 270 280 290 300 280 290 pF1KB7 YLVAWQPVIIGVVQGINYILGLE ::::::::.::.:::: : :::: CCDS47 YLVAWQPVVIGIVQGIIYSLGLE 310 320 >>CCDS73343.1 RNF121 gene_id:55298|Hs108|chr11 (205 aa) initn: 1188 init1: 1188 opt: 1191 Z-score: 1363.3 bits: 259.7 E(32554): 1.3e-69 Smith-Waterman score: 1191; 98.4% identity (98.4% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KB7 MRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LYFTVKLHWWRFLVIWILFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 LYFTVKLHWWRFLVIWILFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 GYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : CCDS73 GYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGRCS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 ESGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTC : CCDS73 ASTSSASVAGASWERSKRVPTAKRR 190 200 295 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 06:57:43 2016 done: Fri Nov 4 06:57:43 2016 Total Scan time: 2.260 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]