(Circular) (Six-base) MAPSORT of: pFN21AB7239.seq Check: 6975 from: 1 to: 5377 pFN21AB7239 5377 bp With 182 enzymes: SgfI * February 27, 2009 14:38 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2150 2258 2150 Size: 108 5269 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3187 278 Size: 53 83 186 936 1651 2468 Fragments arranged by size: 2468 1651 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2075 2182 2720 1937 Size: 138 107 538 4594 Fragments arranged by size: 4594 538 138 107 Acc65I G'GTAC_C Cuts at: 2103 2698 2103 Size: 595 4782 AclI AA'CG_TT Cuts at: 1563 3504 3877 1563 Size: 1941 373 3063 Fragments arranged by size: 3063 1941 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2405 3440 4824 5092 1632 Size: 773 1035 1384 268 1917 Fragments arranged by size: 1917 1384 1035 773 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5180 AflIII A'CryG_T Cuts at: 1203 4276 5253 1203 Size: 3073 977 1327 Fragments arranged by size: 3073 1327 977 AgeI A'CCGG_T Cuts at: 4208 4208 Size: 5377 AhdI GACnn_n'nnGTC Cuts at: 4106 4106 Size: 5377 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5377 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2137 1184 Size: 953 4424 AlwNI CAG_nnn'CTG Cuts at: 2569 3120 4692 2569 Size: 551 1572 3254 Fragments arranged by size: 3254 1572 551 ApaLI G'TGCA_C Cuts at: 3434 4590 3434 Size: 1156 4221 ApoI r'AATT_y Cuts at: 1493 2686 2912 3064 5173 1493 Size: 1193 226 152 2109 1697 Fragments arranged by size: 2109 1697 1193 226 152 AseI AT'TA_AT Cuts at: 160 1032 3931 160 Size: 872 2899 1606 Fragments arranged by size: 2899 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5377 AvaI C'yCGr_G Cuts at: 1870 1943 2702 1870 Size: 73 759 4545 Fragments arranged by size: 4545 759 73 BamHI G'GATC_C Cuts at: 2409 2707 3074 2409 Size: 298 367 4712 Fragments arranged by size: 4712 367 298 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2103 2162 2698 4153 618 Size: 325 217 627 316 59 536 1455 1842 Fragments arranged by size: 1842 1455 627 536 325 316 217 59 BanII G_rGCy'C Cuts at: 1391 2696 1391 Size: 1305 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2521 928 Size: 971 622 3784 Fragments arranged by size: 3784 971 622 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3568 3602 1903 Size: 34 1631 34 3678 Fragments arranged by size: 3678 1631 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3269 4479 3269 Size: 1210 4167 BclI T'GATC_A Cuts at: 1548 1548 Size: 5377 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3988 136 Size: 107 122 71 631 605 2316 1525 Fragments arranged by size: 2316 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2380 5372 2380 Size: 2992 2385 BlpI GC'TnA_GC Cuts at: 2794 2794 Size: 5377 Bme1580I G_kGCm'C Cuts at: 1790 3438 4594 1790 Size: 1648 1156 2573 Fragments arranged by size: 2573 1648 1156 BmgBI CAC'GTC Cuts at: 1318 2626 1318 Size: 1308 4069 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3108 4066 442 Size: 416 53 83 399 24 1691 958 1753 Fragments arranged by size: 1753 1691 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5377 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2675 4037 1239 Size: 1436 1362 2579 Fragments arranged by size: 2579 1436 1362 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3502 4367 4665 3502 Size: 865 298 4214 Fragments arranged by size: 4214 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4040 882 Size: 617 2541 2219 Fragments arranged by size: 2541 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3168 493 Size: 711 1964 2702 Fragments arranged by size: 2702 1964 711 BsaBI GATnn'nnATC Cuts at: 5371 5371 Size: 5377 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3184 3566 4201 275 Size: 53 83 186 936 1651 382 635 1451 Fragments arranged by size: 1651 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2236 2640 3810 4208 4482 4629 5040 2236 Size: 404 1170 398 274 147 411 2573 Fragments arranged by size: 2573 1170 411 404 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2537 2567 1178 Size: 30 165 30 1134 30 3988 Fragments arranged by size: 3988 1134 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5377 BseYI C'CCAG_C Cuts at: 2614 4580 5076 2614 Size: 1966 496 2915 Fragments arranged by size: 2915 1966 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2483 1163 Size: 573 747 4057 Fragments arranged by size: 4057 747 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2827 3588 4616 1540 Size: 275 186 826 761 1028 2301 Fragments arranged by size: 2301 1028 826 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3438 3523 4594 3438 Size: 85 1071 4221 Fragments arranged by size: 4221 1071 85 BsmI GAATG_Cn' Cuts at: 2195 2888 2981 2195 Size: 693 93 4591 Fragments arranged by size: 4591 693 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2696 3438 3523 4594 1391 Size: 399 906 742 85 1071 2174 Fragments arranged by size: 2174 1071 906 742 399 85 BspEI T'CCGG_A Cuts at: 2640 5040 2640 Size: 2400 2977 BspHI T'CATG_A Cuts at: 3266 4996 3266 Size: 1730 3647 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2150 2258 2577 2732 844 Size: 1306 108 319 155 3489 Fragments arranged by size: 3489 1306 319 155 108 BsrBI CCG'CTC Cuts at: 1394 1823 3264 1394 Size: 429 1441 3507 Fragments arranged by size: 3507 1441 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2631 3872 4046 65 Size: 1183 1383 1241 174 1396 Fragments arranged by size: 1396 1383 1241 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4021 4208 1700 Size: 110 2211 187 2869 Fragments arranged by size: 2869 2211 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5377 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5377 BssSI C'ACGA_G Cuts at: 3437 4449 3437 Size: 1012 4365 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5377 BstBI TT'CG_AA Cuts at: 4181 4181 Size: 5377 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5377 BstXI CCAn_nnnn'nTGG Cuts at: 2173 2644 2173 Size: 471 4906 BstYI r'GATC_y Cuts at: 1972 2380 2409 2707 3074 3459 3476 4928 5014 Size: 408 29 298 367 385 17 1452 86 Cuts at: 5014 5026 5372 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 408 385 367 346 298 86 29 17 12 BstZ17I GTA'TAC Cuts at: 2183 2183 Size: 5377 BtgI C'CryG_G Cuts at: 513 1065 2556 513 Size: 552 1491 3334 Fragments arranged by size: 3334 1491 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4638 Fragments arranged by size: 4638 683 56 BtsI GCAGTG_nn' Cuts at: 2893 3687 3707 2893 Size: 794 20 4563 Fragments arranged by size: 4563 794 20 ClaI AT'CG_AT Cuts at: 1554 2436 1554 Size: 882 4495 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5342 DraI TTT'AAA Cuts at: 2681 2681 Size: 5377 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4384 809 Size: 507 3068 1802 Fragments arranged by size: 3068 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2824 3713 5342 Size: 54 1425 50 275 18 994 889 1629 Cuts at: 5342 8 Size: 43 Fragments arranged by size: 1629 1425 994 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2824 1537 Size: 275 1012 4090 Fragments arranged by size: 4090 1012 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3307 1353 Size: 1954 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2591 3964 4338 4484 387 Size: 1064 138 1002 1373 374 146 1280 Fragments arranged by size: 1373 1280 1064 1002 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2405 2675 3440 4037 4824 5092 1239 Size: 393 773 270 765 597 787 268 1524 Fragments arranged by size: 1524 787 773 765 597 393 270 268 EcoNI CCTnn'n_nnAGG Cuts at: 2417 2417 Size: 5377 EcoO109I rG'GnC_Cy Cuts at: 2095 2138 2095 Size: 43 5334 EcoRI G'AATT_C Cuts at: 2686 3064 2686 Size: 378 4999 FspI TGC'GCA Cuts at: 3883 3883 Size: 5377 HaeII r_GCGC'y Cuts at: 1678 2428 2485 4524 1678 Size: 750 57 2039 2531 Fragments arranged by size: 2531 2039 750 57 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2537 2569 4018 4050 4092 Size: 32 135 32 965 32 1449 32 42 Cuts at: 4092 4124 1373 Size: 32 2626 Fragments arranged by size: 2626 1449 965 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2721 2967 669 Size: 988 281 783 246 3079 Fragments arranged by size: 3079 988 783 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5377 HpaI GTT'AAC Cuts at: 2967 2967 Size: 5377 KpnI G_GTAC'C Cuts at: 2107 2702 2107 Size: 595 4782 MfeI C'AATT_G Cuts at: 2976 2976 Size: 5377 MluI A'CGCG_T Cuts at: 5253 5253 Size: 5377 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4491 4675 1305 Size: 3186 184 2007 Fragments arranged by size: 3186 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3555 Fragments arranged by size: 3555 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2119 2642 3335 3694 3853 518 Size: 648 953 523 693 359 159 2042 Fragments arranged by size: 2042 953 693 648 523 359 159 MspA1I CmG'CkG Cuts at: 1606 2614 2793 3470 4618 4863 1606 Size: 1008 179 677 1148 245 2120 Fragments arranged by size: 2120 1148 1008 677 245 179 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4825 NdeI CA'TA_TG Cuts at: 387 387 Size: 5377 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5377 NotI GC'GGCC_GC Cuts at: 2824 2824 Size: 5377 NspI r_CATG'y Cuts at: 1132 1229 2118 2735 4280 1132 Size: 97 889 617 1545 2229 Fragments arranged by size: 2229 1545 889 617 97 PasI CC'CwG_GG Cuts at: 1348 2419 1348 Size: 1071 4306 PciI A'CATG_T Cuts at: 4276 4276 Size: 5377 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5377 PfoI T'CCnGG_A Cuts at: 2352 2352 Size: 5377 PmeI GTTT'AAAC Cuts at: 2681 2681 Size: 5377 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3446 3478 4959 4991 3446 Size: 32 1481 32 3832 Fragments arranged by size: 3832 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2095 2138 2095 Size: 43 5334 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5377 PsiI TTA'TAA Cuts at: 2947 2947 Size: 5377 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 2480 2512 2480 Size: 32 5345 PstI C_TGCA'G Cuts at: 830 2161 2729 830 Size: 1331 568 3478 Fragments arranged by size: 3478 1331 568 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5377 RsrII CG'GwC_CG Cuts at: 2545 2545 Size: 5377 SalI G'TCGA_C Cuts at: 1936 2719 1936 Size: 783 4594 SbfI CC_TGCA'GG Cuts at: 2729 2729 Size: 5377 ScaI AGT'ACT Cuts at: 3625 5337 3625 Size: 1712 3665 SfcI C'TryA_G Cuts at: 826 1045 2157 2725 3860 4541 4732 826 Size: 219 1112 568 1135 681 191 1471 Fragments arranged by size: 1471 1135 1112 681 568 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5377 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5377 SmaI CCC'GGG Cuts at: 1872 2704 1872 Size: 832 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3481 4382 4644 820 Size: 197 926 1538 901 262 1553 Fragments arranged by size: 1553 1538 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3168 493 Size: 2675 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5377 SphI G_CATG'C Cuts at: 1132 2118 2735 1132 Size: 986 617 3774 Fragments arranged by size: 3774 986 617 SspI AAT'ATT Cuts at: 5 52 3301 5 Size: 47 3249 2081 Fragments arranged by size: 3249 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5377 StyI C'CwwG_G Cuts at: 513 1065 2131 2172 2816 513 Size: 552 1066 41 644 3074 Fragments arranged by size: 3074 1066 644 552 41 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2319 2432 2489 3404 3421 3574 3759 Size: 1255 739 113 57 915 17 153 185 Cuts at: 3759 4204 325 Size: 445 1498 Fragments arranged by size: 1498 1255 915 739 445 185 153 113 57 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2454 2466 3623 Size: 274 80 33 51 1443 477 12 1157 Cuts at: 3623 5335 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1157 477 274 138 80 51 33 12 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5337 5369 5337 Size: 32 5345 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5377 XbaI T'CTAG_A Cuts at: 2713 2713 Size: 5377 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5377 XmaI C'CCGG_G Cuts at: 1870 2702 1870 Size: 832 4545 XmnI GAAnn'nnTTC Cuts at: 3506 3506 Size: 5377 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3185 276 Size: 53 83 186 936 1651 2468 Fragments arranged by size: 2468 1651 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BstZ17I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PsrI PstI PvuI RsrII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI Bsu36I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PvuII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI