FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
pF1KB7097, 194 aa
vs /omim/omim.rfq.tfa library
10741820 residues in 18658 sequences
Expectation_n fit: rho(ln(x))= 3.6557+/-0.000424; mu= 15.3326+/- 0.026
mean_var=76.8464+/-17.629, 0's: 1 Z-trim: 38 B-trim: 1094 in 1/57
Lambda= 0.146306
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(18658)
NP_003691 (OMIM: 608494) olfactory receptor, famil ( 308) 653 146.9 6.8e-36
NP_036501 (OMIM: 608497) olfactory receptor, famil ( 317) 631 142.2 1.7e-34
NP_009091 (OMIM: 600578) olfactory receptor, famil ( 312) 622 140.3 6.4e-34
NP_835462 (OMIM: 608493) olfactory receptor, famil ( 317) 603 136.3 1e-32
NP_001005191 (OMIM: 611538) olfactory receptor, fa ( 312) 583 132.1 1.9e-31
NP_036492 (OMIM: 603232) olfactory receptor, famil ( 312) 578 131.1 4e-31
NP_003687 (OMIM: 608495) olfactory receptor, famil ( 327) 571 129.6 1.1e-30
NP_001005487 (OMIM: 611677) olfactory receptor, fa ( 307) 566 128.5 2.3e-30
NP_002539 (OMIM: 164342) olfactory receptor, famil ( 312) 543 123.7 6.7e-29
NP_003688 (OMIM: 608492) olfactory receptor, famil ( 314) 521 119.0 1.7e-27
NP_006628 (OMIM: 608496) olfactory receptor, famil ( 314) 519 118.6 2.3e-27
NP_689643 (OMIM: 611267) olfactory receptor, famil ( 317) 334 79.6 1.3e-15
NP_110401 (OMIM: 611268) olfactory receptor, famil ( 320) 323 77.2 6.5e-15
NP_001699 (OMIM: 190900) opsin 1 (cone pigments), ( 348) 140 38.7 0.0029
NP_000904 (OMIM: 602548) opiate receptor-like 1 [H ( 370) 137 38.1 0.0046
NP_872588 (OMIM: 602548) opiate receptor-like 1 [H ( 370) 137 38.1 0.0046
>>NP_003691 (OMIM: 608494) olfactory receptor, family 2, (308 aa)
initn: 671 init1: 541 opt: 653 Z-score: 753.5 bits: 146.9 E(): 6.8e-36
Smith-Waterman score: 653; 54.301% identity (78.495% similar) in 186 aa overlap (1-186:118-301)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
::::::::::.:::: :::::::. ::
NP_003 RKKVIAFTLCAARLLFFLIFGCTQCALLAVMSYDRYVAICNPLRYPNIMTWKVCVQLATG
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
::: : :...: ...:::::. : : ::::: ..: :: .:: ....:: . ::
NP_003 SWTSGILVSVVDTTFILRLPYRGSNSIAHFFCEAPALLILASTDTHASEMAIFLMGVVIL
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
. :. :.::::..:........: : ::::::.::: :: ::.::::. ::.:::
NP_003 LIPVFLILVSYGRIIVTVVKMKSTVGSLKAFSTCGSHLMVVILFYGSAIITYMTPKSS--
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
..:.: . .::. .::::::::.::: .::.:::.
NP_003 KQQEKSVSVFYAIVTPMLNPLIYSLRNKDVKAALRKVATRNFP
270 280 290 300
>>NP_036501 (OMIM: 608497) olfactory receptor, family 2, (317 aa)
initn: 655 init1: 620 opt: 631 Z-score: 728.3 bits: 142.2 E(): 1.7e-34
Smith-Waterman score: 631; 50.000% identity (77.083% similar) in 192 aa overlap (1-192:118-309)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:.::::::.: ::: :: .: ::::
NP_036 EHKAIPFQSCAAQLFFSLALGGIEFVLLAVMAYDRYVAVCDALRYSAIMHGGLCARLAIT
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
::. : . . :.... ..::.: . :.:. ::.:.:.::::.:: :.:.:... . .:
NP_036 SWVSGFISSPVQTAITFQLPMCRNKFIDHISCELLAVVRLACVDTSSNEVTIMVSSIVLL
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
. :.::::.:: .:...::.::: :::.::: ::.::: ::.: .: :: :. :.:
NP_036 MTPFCLVLLSYIQIISTILKIQSREGRKKAFHTCASHLTVVALCYGVAIFTYIQPHSSPS
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
:.:.. .::. ..:::::.::.::: ::::: .. : : :
NP_036 VLQEKLFSVFYAILTPMLNPMIYSLRNKEVKGAWQKLLWKFSGLTSKLAT
270 280 290 300 310
>>NP_009091 (OMIM: 600578) olfactory receptor, family 2, (312 aa)
initn: 622 init1: 622 opt: 622 Z-score: 718.1 bits: 140.3 E(): 6.4e-34
Smith-Waterman score: 622; 49.215% identity (76.440% similar) in 191 aa overlap (1-191:116-306)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:..:::::.:.::.: :. ..: :: .
NP_009 PKKTISFLDCSVQIFIFLSLGTTECILLTVMAFDRYVAVCQPLHYATIIHPRLCWQLASV
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
.:. : . ..:.. :.:::: :... : ::. ...::.: :: :.. . .: .:::
NP_009 AWVIGLVESVVQTPSTLHLPFCPDRQVDDFVCEVPALIRLSCEDTSYNEIQVAVASVFIL
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
: :: :.::::. : :.:::.:..::::::.:::::: :: ::..:.:..:. ::. .
NP_009 VVPLSLILVSYGAITWAVLRINSAKGRRKAFGTCSSHLTVVTLFYSSVIAVYLQPKNPYA
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
.:. : . :::. .: ::::::.::: :: :.:: : ::
NP_009 QERGKFFGLFYAVGTPSLNPLIYTLRNKEVTRAFRRLLGKEMGLTQS
270 280 290 300 310
>>NP_835462 (OMIM: 608493) olfactory receptor, family 10 (317 aa)
initn: 623 init1: 595 opt: 603 Z-score: 696.4 bits: 136.3 E(): 1e-32
Smith-Waterman score: 603; 48.421% identity (76.316% similar) in 190 aa overlap (1-190:119-308)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:.:::::::: ::.: .::. .. :: .
NP_835 QDTTISFLGCATQMYFFFFFGVAECFLLATMAYDRYVAICSPLHYPVIMNQRTRAKLAAA
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
:: : .: :... .. .:::: ..:::::. ::.:.:::: : .. ... ....
NP_835 SWFPGFPVATVQTTWLFSFPFCGTNKVNHFFCDSPPVLKLVCADTALFEIYAIVGTILVV
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
. : :.: ::..: ::::.: :..:..:::::::::: ::.::. :. . :. ::: .
NP_835 MIPCLLILCSYTRIAAAILKIPSAKGKHKAFSTCSSHLLVVSLFYISSSLTYFWPKSNNS
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
:..:.: : :. .:::::.::.::: :::.:: :.. :
NP_835 PESKKLLSLSYTVVTPMLNPIIYSLRNSEVKNALSRTFHKVLALRNCIP
270 280 290 300 310
>>NP_001005191 (OMIM: 611538) olfactory receptor, family (312 aa)
initn: 599 init1: 575 opt: 583 Z-score: 673.6 bits: 132.1 E(): 1.9e-31
Smith-Waterman score: 583; 44.211% identity (76.316% similar) in 190 aa overlap (1-190:118-307)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:.:::.:::::::.: .::. .: :...
NP_001 RSKDISYMGCLTQVYFLMMFAGMDTFLLAVMAYDRFVAICHPLHYTVIMNPCLCGLLVLA
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
:: ...::. :. :: : :: ::::: .::..::..: ::..:...: ..
NP_001 SWFIIFWFSLVHILLMKRLTFSTGTEIPHFFCEPAQVLKVACSNTLLNNIVLYVATALLG
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
: :. .: :::.:..... ..: .:. ::::::.::::::.::.:... .:.. :
NP_001 VFPVAGILFSYSQIVSSLMGMSSTKGKYKAFSTCGSHLCVVSLFYGTGLGVYLSSAVTHS
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
..... ..:. .:::::.::.::: .:::::.: : .
NP_001 SQSSSTASVMYAMVTPMLNPFIYSLRNKDVKGALERLLSRADSCP
270 280 290 300 310
>>NP_036492 (OMIM: 603232) olfactory receptor, family 1, (312 aa)
initn: 600 init1: 570 opt: 578 Z-score: 667.9 bits: 131.1 E(): 4e-31
Smith-Waterman score: 578; 42.021% identity (74.468% similar) in 188 aa overlap (1-188:118-305)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:.::..::.::::.: :: ..: :.
NP_036 ETQTISFCGCLTQMYFVFMFVDMDNFLLAVMAYDHFVAVCHPLHYTAKMTHQLCALLVAG
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
:. ..: ...:. :. : ::. :.::::.. .:.:.:.:: ::.:.:.. ...
NP_036 LWVVANLNVLLHTLLMAPLSFCADNAITHFFCDVTPLLKLSCSDTHLNEVIILSEGALVM
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
. :. .:.:: :: ..:.. : .:: ::::::.::: :: ::... :..:. : : :
NP_036 ITPFLCILASYMHITCTVLKVPSTKGRWKAFSTCGSHLAVVLLFYSTIIAVYFNPLSSHS
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
:.. . ..:. .:::::.::.::: .::::....
NP_036 AEKDTMATVLYTVVTPMLNPFIYSLRNRYLKGALKKVVGRVVFSV
270 280 290 300 310
>>NP_003687 (OMIM: 608495) olfactory receptor, family 6, (327 aa)
initn: 563 init1: 563 opt: 571 Z-score: 659.7 bits: 129.6 E(): 1.1e-30
Smith-Waterman score: 571; 44.560% identity (71.503% similar) in 193 aa overlap (1-193:123-311)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:.::::.:::.::.: .:.. ..:. .:
NP_003 HGQLISFEGCMTQLYFFLGLGCTECVLLAVMAYDRYMAICYPLHYPVIVSGRLCVQMAAG
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
::. : ..::.: :: : .::: ::::::.. .: :.:.: ... : .:::
NP_003 SWAGGFGISMVKVFLISGLSYCGPNIINHFFCDVSPLLNLSCTDMSTAELTDFILAIFIL
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
.::: .. .:: : .:...: :. :: ::::::.::: :: .:....: .: ::.
NP_003 LGPLSVTGASYVAITGAVMHIPSAAGRYKAFSTCASHLTVVIIFYAASIFIYARPKALSA
220 230 240 250 260 270
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
. .:.. ..:. . :.:::.:: ::: ::: :::: :
NP_003 FDTNKLVSVLYAVIVPLLNPIIYCLRNQEVK----RALCCTLHLYQHQDPDPKKASRNV
280 290 300 310 320
>>NP_001005487 (OMIM: 611677) olfactory receptor, family (307 aa)
initn: 556 init1: 556 opt: 566 Z-score: 654.3 bits: 128.5 E(): 2.3e-30
Smith-Waterman score: 566; 42.487% identity (74.611% similar) in 193 aa overlap (1-193:115-307)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:.:::::::: ::.: ::. ..:..:
NP_001 SENTISYAGCMSQLFLFTWSLGAEMVLFTTMAYDRYVAICFPLHYSTIMNHHMCVALLSM
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
. . . ::..::.:: :::: :.:::::: .: :.:. . .:.:....: . .
NP_001 VMAIAVTNSWVHTALIMRLTFCGPNTIDHFFCEIPPLLALSCSPVRINEVMVYVADITLA
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
.: . :. .::. :..:::::.. ::.::::::::::: :: :... .: :. : : .
NP_001 IGDFILTCISYGFIIVAILRIRTVEGKRKAFSTCSSHLTVVTLYYSPVIYTYIRPASSYT
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
:..::. .:. .: :::..:...: :.....:... .:
NP_001 FERDKVVAALYTLVTPTLNPMVYSFQNREMQAGIRKVFAFLKH
270 280 290 300
>>NP_002539 (OMIM: 164342) olfactory receptor, family 1, (312 aa)
initn: 530 init1: 446 opt: 543 Z-score: 628.0 bits: 123.7 E(): 6.7e-29
Smith-Waterman score: 543; 43.158% identity (73.158% similar) in 190 aa overlap (1-190:118-306)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:.:::::::: ::.: :. :.:: :
NP_002 HNKAISYAGCLTQLYFLVSLVALDNLILAVMAYDRYVAICCPLHYTTAMSPKLCILLLSL
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
:. . : ...:. :. :. ::: :.:...:::. .::.::.. .:..:..:. ::.
NP_002 CWVLSVLYGLIHTLLMTRVTFCGSRKIHYIFCEMYVLLRMACSNIQINHTVLIATGCFIF
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
. :. .:..:: :. ::::: : . ::::::.::: .:.::.:. ..:. : .
NP_002 LIPFGFVIISYVLIIRAILRIPSVSKKYKAFSTCASHLGAVSLFYGTLCMVYLKPLHTYS
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
...: ..:. .::.::.::.::: ...::: : : :
NP_002 V-KDSVATVMYAVVTPMMNPFIYSLRNKDMHGALGRLLDKHFKRLT
270 280 290 300 310
>>NP_003688 (OMIM: 608492) olfactory receptor, family 5, (314 aa)
initn: 513 init1: 513 opt: 521 Z-score: 602.9 bits: 119.0 E(): 1.7e-27
Smith-Waterman score: 521; 42.268% identity (69.588% similar) in 194 aa overlap (1-194:118-311)
10 20 30
pF1KB7 MSYDRYVAICHPLRYFIIMTWKVCITLAIT
:.::::.:::.:: : .::. : . .:
NP_003 EKKTISFAGCFLQMYFFISLATTECILFGLMAYDRYAAICRPLLYSLIMSRTVYLKMAAG
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB7 SWTCGSLLAMVHVSLILRLPFCGPREINHFFCEILSVLRLACADTWLNQVVIFAACMFIL
... : : ::..: . : :: :.::::. ...:.:.:: :.. . .
NP_003 AFAAGLLNFMVNTSHVSSLSFCDSNVIHHFFCDSPPLFKLSCSDTILKESISSILAGVNI
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB7 VGPLCLVLVSYSHILAAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSRHP
:: : ..: :::..: .:. ..:::::..:::::.::: .. ::... : :. :.: .
NP_003 VGTLLVILSSYSYVLFSIFSMHSGEGRHRAFSTCASHLTAIILFYATCIYTYLRPSSSYS
210 220 230 240 250 260
160 170 180 190
pF1KB7 EEQQKVLFLFYSSFNPMLNPLIYNLRNVEVKGALRRALCKESHS
.:.:: .::. ::::::::.::. ::: :: .. .. :
NP_003 LNQDKVASVFYTVVIPMLNPLIYSLRSKEVKKALANVISRKRTSSFL
270 280 290 300 310
194 residues in 1 query sequences
10741820 residues in 18658 library sequences
Tcomplib [34.26] (6 proc)
start: Thu Mar 6 09:11:37 2008 done: Thu Mar 6 09:11:38 2008
Total Scan time: 2.360 Total Display time: 0.030
Function used was FASTA [version 34.26.5 April 26, 2007]