Result of FASTA (ccds) for
pFN21AB3501
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3501, 380 aa
1>>>pF1KB3501 380 - 380 aa - 380 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2012+/-0.00101; mu= 17.2386+/- 0.061
mean_var=64.4598+/-13.118, 0's: 0 Z-trim(103.1): 48 B-trim: 0 in 0/51
Lambda= 0.159746
statistics sampled from 7202 (7246) to 7202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.588), E-opt: 0.2 (0.223), width: 16
Scan time: 1.820
The best scores are: opt bits E(32554)
CCDS32834.1 ST8SIA3 gene_id:51046|Hs108|chr18 ( 380) 2567 600.6 7.2e-172
CCDS81919.1 ST8SIA2 gene_id:8128|Hs108|chr15 ( 354) 817 197.3 1.7e-50
CCDS10372.1 ST8SIA2 gene_id:8128|Hs108|chr15 ( 375) 817 197.3 1.8e-50
CCDS4091.1 ST8SIA4 gene_id:7903|Hs108|chr5 ( 359) 765 185.3 7.2e-47
CCDS31158.1 ST8SIA6 gene_id:338596|Hs108|chr10 ( 398) 651 159.1 6.3e-39
CCDS8697.1 ST8SIA1 gene_id:6489|Hs108|chr12 ( 356) 599 147.1 2.3e-35
CCDS77183.1 ST8SIA5 gene_id:29906|Hs108|chr18 ( 345) 497 123.6 2.7e-28
CCDS11930.1 ST8SIA5 gene_id:29906|Hs108|chr18 ( 376) 497 123.6 2.9e-28
CCDS77184.1 ST8SIA5 gene_id:29906|Hs108|chr18 ( 412) 497 123.6 3.1e-28
CCDS47252.1 ST8SIA4 gene_id:7903|Hs108|chr5 ( 168) 300 78.0 6.9e-15
CCDS673.1 ST6GALNAC5 gene_id:81849|Hs108|chr1 ( 336) 256 68.0 1.4e-11
CCDS6883.1 ST6GALNAC4 gene_id:27090|Hs108|chr9 ( 302) 252 67.1 2.4e-11
>>CCDS32834.1 ST8SIA3 gene_id:51046|Hs108|chr18 (380 aa)
initn: 2567 init1: 2567 opt: 2567 Z-score: 3199.0 bits: 600.6 E(32554): 7.2e-172
Smith-Waterman score: 2567; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)
10 20 30 40 50 60
pF1KB3 MRNCKMARVASVLGLVMLSVALLILSLISYVSLKKENIFTTPKYASPGAPRMYMFHAGFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MRNCKMARVASVLGLVMLSVALLILSLISYVSLKKENIFTTPKYASPGAPRMYMFHAGFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 SQFALKFLDPSFVPITNSLTQELQEKPSKWKFNRTAFLHQRQEILQHVDVIKNFSLTKNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SQFALKFLDPSFVPITNSLTQELQEKPSKWKFNRTAFLHQRQEILQHVDVIKNFSLTKNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VRIGQLMHYDYSSHKYVFSISNNFRSLLPDVSPIMNKHYNICAVVGNSGILTGSQCGQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VRIGQLMHYDYSSHKYVFSISNNFRSLLPDVSPIMNKHYNICAVVGNSGILTGSQCGQEI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 DKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 AILWIPAFFFHTSATVTRTLVDFFVEHRGQLKVQLAWPGNIMQHVNRYWKNKHLSPKRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AILWIPAFFFHTSATVTRTLVDFFVEHRGQLKVQLAWPGNIMQHVNRYWKNKHLSPKRLS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 TGILMYTLASAICEEIHLYGFWPFGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TGILMYTLASAICEEIHLYGFWPFGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEF
310 320 330 340 350 360
370 380
pF1KB3 QLLYRMHGEGLTKLTLSHCA
::::::::::::::::::::
CCDS32 QLLYRMHGEGLTKLTLSHCA
370 380
>>CCDS81919.1 ST8SIA2 gene_id:8128|Hs108|chr15 (354 aa)
initn: 716 init1: 410 opt: 817 Z-score: 1019.8 bits: 197.3 E(32554): 1.7e-50
Smith-Waterman score: 817; 39.1% identity (74.7% similar) in 312 aa overlap (70-379:44-350)
40 50 60 70 80 90
pF1KB3 TTPKYASPGAPRMYMFHAGFRSQFALKFLDPSFVPITN-SLTQELQEKPSKWKFNRTAFL
:. : .: :. ...: :::. :.: :
CCDS81 TLLVVFLIFADISEIEEEIGAEVVINGSSSPAVVDRSNESIKHNIQPASSKWRHNQTLSL
20 30 40 50 60 70
100 110 120 130 140 150
pF1KB3 HQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLPDVSPIMNKH
. :..::. .:. :..:. :.... :...:: .. . ....:.:. ::: .::. :::
CCDS81 RIRKQILKFLDAEKDISVLKGTLKPGDIIHYIFDRDS-TMNVSQNLYELLPRTSPLKNKH
80 90 100 110 120 130
160 170 180 190 200 210
pF1KB3 YNICAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILEKY
.. ::.:::::.: .: :::::: .::.:::.::.. . :::: ::.:.:.:::....
CCDS81 FGTCAIVGNSGVLLNSGCGQEIDAHSFVIRCNLAPVQEYARDVGLKTDLVTMNPSVIQRA
140 150 160 170 180 190
220 230 240 250 260 270
pF1KB3 YNNLLTIQDRNNFFLSLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHRGQLKVQLAWP
...:.. :.... :..:.:.:::::::. . . .. . .....: ...:. :.:
CCDS81 FEDLVNATWREKLLQRLHSLNGSILWIPAFMARGGKERVEWVNELILKH--HVNVRTAYP
200 210 220 230 240 250
280 290 300 310 320 330
pF1KB3 GNIMQHVNR-YWKNKHLSPKRLSTGILMYTLASAICEEIHLYGFWPFGFDPNTREDLPYH
. . :. : :: .... :: .::.::::::. .:..:.::::::: .: : .. . ::
CCDS81 SLRLLHAVRGYWLTNKVHIKRPTTGLLMYTLATRFCKQIYLYGFWPFPLDQN-QNPVKYH
260 270 280 290 300
340 350 360 370 380
pF1KB3 YYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKLTLSHCA
:::. .:.. : .: ::. : .: .: :::...:
CCDS81 YYDSLKYGYTSQ-ASPHTMPLEFKALKSLHEQGALKLTVGQCDGAT
310 320 330 340 350
>>CCDS10372.1 ST8SIA2 gene_id:8128|Hs108|chr15 (375 aa)
initn: 716 init1: 410 opt: 817 Z-score: 1019.4 bits: 197.3 E(32554): 1.8e-50
Smith-Waterman score: 817; 39.1% identity (74.7% similar) in 312 aa overlap (70-379:65-371)
40 50 60 70 80 90
pF1KB3 TTPKYASPGAPRMYMFHAGFRSQFALKFLDPSFVPITN-SLTQELQEKPSKWKFNRTAFL
:. : .: :. ...: :::. :.: :
CCDS10 SGGRGTIRSAVNSLHSKSNRAEVVINGSSSPAVVDRSNESIKHNIQPASSKWRHNQTLSL
40 50 60 70 80 90
100 110 120 130 140 150
pF1KB3 HQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLPDVSPIMNKH
. :..::. .:. :..:. :.... :...:: .. . ....:.:. ::: .::. :::
CCDS10 RIRKQILKFLDAEKDISVLKGTLKPGDIIHYIFDRDS-TMNVSQNLYELLPRTSPLKNKH
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB3 YNICAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILEKY
.. ::.:::::.: .: :::::: .::.:::.::.. . :::: ::.:.:.:::....
CCDS10 FGTCAIVGNSGVLLNSGCGQEIDAHSFVIRCNLAPVQEYARDVGLKTDLVTMNPSVIQRA
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB3 YNNLLTIQDRNNFFLSLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHRGQLKVQLAWP
...:.. :.... :..:.:.:::::::. . . .. . .....: ...:. :.:
CCDS10 FEDLVNATWREKLLQRLHSLNGSILWIPAFMARGGKERVEWVNELILKH--HVNVRTAYP
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB3 GNIMQHVNR-YWKNKHLSPKRLSTGILMYTLASAICEEIHLYGFWPFGFDPNTREDLPYH
. . :. : :: .... :: .::.::::::. .:..:.::::::: .: : .. . ::
CCDS10 SLRLLHAVRGYWLTNKVHIKRPTTGLLMYTLATRFCKQIYLYGFWPFPLDQN-QNPVKYH
280 290 300 310 320 330
340 350 360 370 380
pF1KB3 YYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKLTLSHCA
:::. .:.. : .: ::. : .: .: :::...:
CCDS10 YYDSLKYGYTSQ-ASPHTMPLEFKALKSLHEQGALKLTVGQCDGAT
340 350 360 370
>>CCDS4091.1 ST8SIA4 gene_id:7903|Hs108|chr5 (359 aa)
initn: 677 init1: 392 opt: 765 Z-score: 955.0 bits: 185.3 E(32554): 7.2e-47
Smith-Waterman score: 765; 39.3% identity (73.5% similar) in 298 aa overlap (83-379:64-356)
60 70 80 90 100 110
pF1KB3 YMFHAGFRSQFALKFLDPSFVPITNSLTQELQEKPSKWKFNRTAFLHQRQEILQHVDVIK
.:.. ::.: . :. :..::. .:. .
CCDS40 TQLIGDGELSLSRSLVNSSDKIIRKAGSSIFQHNVEGWKINSSLVLEIRKNILRFLDAER
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB3 NFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLPDVSPIMNKHYNICAVVGNSGILT
. :..:.: . :...:: ... ...::....::::.:::. :.... ::::::::::
CCDS40 DVSVVKSSFKPGDVIHY-VLDRRRTLNISHDLHSLLPEVSPMKNRRFKTCAVVGNSGILL
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB3 GSQCGQEIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILEKYYNNLLTIQDRNNFF
:.::.:::. .::.:::.::. : ::: :... :.:::.... .... . .::..:
CCDS40 DSECGKEIDSHNFVIRCNLAPVVEFAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFV
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB3 LSLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHRGQLKVQLAWPGNIMQHVNR-YWKN
:. :. ..::::::. . . .. . ... ...:::. :.:. . :. : :: .
CCDS40 HRLSMLNDSVLWIPAFMVKGGEKHVEWVNALIL--KNKLKVRTAYPSLRLIHAVRGYWLT
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB3 KHLSPKRLSTGILMYTLASAICEEIHLYGFWPFGFDPNTREDLPYHYYDKKGTKFTTKWQ
... :: :::.::::::. .:.:::::::::: : : . . ::::: .. ..
CCDS40 NKVPIKRPSTGLLMYTLATRFCDEIHLYGFWPFPKDLNGKA-VKYHYYDDLKYRYFSN-A
280 290 300 310 320
360 370 380
pF1KB3 ESHQLPAEFQLLYRMHGEGLTKLTLSHCA
:..: ::. : .:..: ::: ..:
CCDS40 SPHRMPLEFKTLNVLHNRGALKLTTGKCVKQ
330 340 350
>>CCDS31158.1 ST8SIA6 gene_id:338596|Hs108|chr10 (398 aa)
initn: 445 init1: 204 opt: 651 Z-score: 812.3 bits: 159.1 E(32554): 6.3e-39
Smith-Waterman score: 651; 35.8% identity (67.5% similar) in 302 aa overlap (82-379:109-395)
60 70 80 90 100 110
pF1KB3 MYMFHAGFRSQFALKFLDPSFVPITNSLTQELQEKPSKWKFNRTAFLHQRQEILQHVDVI
..: : :: . . . : .. . :..
CCDS31 EKCKNLQYGIESFSNKTKGYSENDYLQIITDIQSCP--WKRQAEEYANFRAKLASCCDAV
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB3 KNFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLPDVSPIMNKHYNICAVVGNSGIL
.:: ...:.. .: : :. :.: . :..:. ..: .:... :: ::::::.:::
CCDS31 QNFVVSQNNTPVGTNMSYEVESKKEI-PIKKNIFHMFPVSQPFVDYPYNQCAVVGNGGIL
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB3 TGSQCGQEIDKSDFVFRCNFAPTEA-FQRDVGRKTNLTTFNPSILEKYYNNLLTIQDRNN
. : :: ::::::::::::. :: . ..::: ::::.:.::::. :.:: ....
CCDS31 NKSLCGTEIDKSDFVFRCNLPPTTGDVSKDVGSKTNLVTINPSIITLKYGNL---KEKKA
200 210 220 230 240 250
240 250 260 270 280
pF1KB3 FFL-SLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHRGQLKVQLAWPGNIMQHVNRYW
.:: .. :.. .::: :.... .. . . : ... :: . : . .. . .:
CCDS31 LFLEDIATYGDAFFLLPAFSFRANTGTSFKVYYTLEESKARQKVLFFHP-KYLKDLALFW
260 270 280 290 300 310
290 300 310 320 330 340
pF1KB3 KNKHLSPKRLSTGILMYTLASAICEEIHLYGFWPFGFDPNTREDLP--YHYYDKKGTKFT
..: .. :::::... ..: .:....:::::::. .: ::.: .::::.: :
CCDS31 RTKGVTAYRLSTGLMITSVAVELCKNVKLYGFWPFS---KTVEDIPVSHHYYDNKLPK--
320 330 340 350 360
350 360 370 380
pF1KB3 TKWQESHQLPAEFQLLYRMHGEGLTKLTLSHCA
. ::.: :.. . ..: .:. :: .:.:
CCDS31 ---HGFHQMPKEYSQILQLHMKGILKLQFSKCEVA
370 380 390
>>CCDS8697.1 ST8SIA1 gene_id:6489|Hs108|chr12 (356 aa)
initn: 420 init1: 155 opt: 599 Z-score: 748.3 bits: 147.1 E(32554): 2.3e-35
Smith-Waterman score: 599; 31.4% identity (66.0% similar) in 315 aa overlap (67-379:44-347)
40 50 60 70 80 90
pF1KB3 NIFTTPKYASPGAPRMYMFHAGFRSQFALKFLDPSF-VPITNSLTQELQEKPSKWKFNRT
.. : . .: . ..: . .. . :. :.:
CCDS86 GAMAVLAWKFPRTRLPMGASALCVVVLCWLYIFPVYRLPNEKEIVQGVLQQGTAWRRNQT
20 30 40 50 60 70
100 110 120 130 140 150
pF1KB3 AFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLPDVSPIM
: :... . : . :..:: . .:. : :: . : :.:.:. ::.:...:..
CCDS86 AARAFRKQMEDCCDPAHLFAMTKMNSPMGKSMWYD-GEFLYSFTIDNSTYSLFPQATPFQ
80 90 100 110 120 130
160 170 180 190 200 210
pF1KB3 NKHYNICAVVGNSGILTGSQCGQEIDKSDFVFRCNFAP-TEAFQRDVGRKTNLTTFNPSI
. ::::::.::: : ::..::...::.:::. : . . .::: :..:.: ::::
CCDS86 -LPLKKCAVVGNGGILKKSGCGRQIDEANFVMRCNLPPLSSEYTKDVGSKSQLVTANPSI
140 150 160 170 180 190
220 230 240 250 260 270
pF1KB3 LEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEHRGQLKVQ
... ..::: .:..: ..: . . ...::: ..:.. . . . . .. :
CCDS86 IRQRFQNLL--WSRKTFVDNMKIYNHSYIYMPAFSMKTGTEPSLRVYYTLSDVGANQTVL
200 210 220 230 240
280 290 300 310 320 330
pF1KB3 LAWPGNIMQHVNRYWKNKHLSPKRLSTGILMYTLASAICEEIHLYGFWPFGFDPNTREDL
.: : :... ....::.. . ::::::... . : ..:::. .::::::. . . .. .
CCDS86 FANP-NFLRSIGKFWKSRGIHAKRLSTGLFLVSAALGLCEEVAIYGFWPFSVNMH-EQPI
250 260 270 280 290 300
340 350 360 370 380
pF1KB3 PYHYYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKLTLSHCA
.::::. . .. : .: :: :. .: : .. :. :
CCDS86 SHHYYDN-----VLPFSGFHAMPEEFLQLWYLHKIGALRMQLDPCEDTSLQPTS
310 320 330 340 350
>>CCDS77183.1 ST8SIA5 gene_id:29906|Hs108|chr18 (345 aa)
initn: 401 init1: 168 opt: 497 Z-score: 621.4 bits: 123.6 E(32554): 2.7e-28
Smith-Waterman score: 497; 31.0% identity (64.2% similar) in 268 aa overlap (114-380:87-343)
90 100 110 120 130 140
pF1KB3 QEKPSKWKFNRTAFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNN
:. ::. .: ..:. .. .. :...
CCDS77 LQMCKWAMNISEANQFKSTLSRCCNAPAFLFTTQKNTP-LGTKLKYEVDTSG-IYHINQE
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB3 FRSLLPDVSPIMNKHYNICAVVGNSGILTGSQCGQEIDKSDFVFRCNFAP-TEAFQRDVG
. ..: : . .... ::::::.::: .:.::.::...:::::::. : .: . :::
CCDS77 IFRMFPKDMPYYRSQFKKCAVVGNGGILKNSRCGREINSADFVFRCNLPPISEKYTMDVG
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB3 RKTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPAFFFHTSATVTRTLVD
::...: ::::. . ...: . : :. :. ..: . .:::. .: : . :
CCDS77 VKTDVVTVNPSIITERFHKLE--KWRRPFYRVLQVYENASVLLPAFY-NTRNTDVSIRVK
180 190 200 210 220 230
270 280 290 300 310 320
pF1KB3 FFVEHRGQLKVQLAWPGNIMQHVNRYWKNKHLSPKRLSTGILMYTLASAICEEIHLYGFW
. .. . .. . . . .:.::: . . ::.:::... : : .:::.::.:::
CCDS77 YVLDDFESPQAVYYFHPQYLVNVSRYWLSLGVRAKRISTGLILVTAALELCEEVHLFGFW
240 250 260 270 280 290
330 340 350 360 370 380
pF1KB3 PFGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKLTLSHCA
: ..:. . .::::. . : .:.:. . ..:..:. .. . :.
CCDS77 AFPMNPSGLY-ITHHYYDNVKPR-----PGFHAMPSEIFNFLHLHSRGILRVHTGTCSCC
300 310 320 330 340
>>CCDS11930.1 ST8SIA5 gene_id:29906|Hs108|chr18 (376 aa)
initn: 401 init1: 168 opt: 497 Z-score: 620.9 bits: 123.6 E(32554): 2.9e-28
Smith-Waterman score: 497; 31.0% identity (64.2% similar) in 268 aa overlap (114-380:118-374)
90 100 110 120 130 140
pF1KB3 QEKPSKWKFNRTAFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNN
:. ::. .: ..:. .. .. :...
CCDS11 LQMCKWAMNISEANQFKSTLSRCCNAPAFLFTTQKNTP-LGTKLKYEVDTSG-IYHINQE
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB3 FRSLLPDVSPIMNKHYNICAVVGNSGILTGSQCGQEIDKSDFVFRCNFAP-TEAFQRDVG
. ..: : . .... ::::::.::: .:.::.::...:::::::. : .: . :::
CCDS11 IFRMFPKDMPYYRSQFKKCAVVGNGGILKNSRCGREINSADFVFRCNLPPISEKYTMDVG
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB3 RKTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPAFFFHTSATVTRTLVD
::...: ::::. . ...: . : :. :. ..: . .:::. .: : . :
CCDS11 VKTDVVTVNPSIITERFHKLE--KWRRPFYRVLQVYENASVLLPAFY-NTRNTDVSIRVK
210 220 230 240 250 260
270 280 290 300 310 320
pF1KB3 FFVEHRGQLKVQLAWPGNIMQHVNRYWKNKHLSPKRLSTGILMYTLASAICEEIHLYGFW
. .. . .. . . . .:.::: . . ::.:::... : : .:::.::.:::
CCDS11 YVLDDFESPQAVYYFHPQYLVNVSRYWLSLGVRAKRISTGLILVTAALELCEEVHLFGFW
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB3 PFGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKLTLSHCA
: ..:. . .::::. . : .:.:. . ..:..:. .. . :.
CCDS11 AFPMNPSGLY-ITHHYYDNVKPR-----PGFHAMPSEIFNFLHLHSRGILRVHTGTCSCC
330 340 350 360 370
>>CCDS77184.1 ST8SIA5 gene_id:29906|Hs108|chr18 (412 aa)
initn: 401 init1: 168 opt: 497 Z-score: 620.3 bits: 123.6 E(32554): 3.1e-28
Smith-Waterman score: 497; 31.0% identity (64.2% similar) in 268 aa overlap (114-380:154-410)
90 100 110 120 130 140
pF1KB3 QEKPSKWKFNRTAFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNN
:. ::. .: ..:. .. .. :...
CCDS77 LQMCKWAMNISEANQFKSTLSRCCNAPAFLFTTQKNTP-LGTKLKYEVDTSG-IYHINQE
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB3 FRSLLPDVSPIMNKHYNICAVVGNSGILTGSQCGQEIDKSDFVFRCNFAP-TEAFQRDVG
. ..: : . .... ::::::.::: .:.::.::...:::::::. : .: . :::
CCDS77 IFRMFPKDMPYYRSQFKKCAVVGNGGILKNSRCGREINSADFVFRCNLPPISEKYTMDVG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB3 RKTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPAFFFHTSATVTRTLVD
::...: ::::. . ...: . : :. :. ..: . .:::. .: : . :
CCDS77 VKTDVVTVNPSIITERFHKLE--KWRRPFYRVLQVYENASVLLPAFY-NTRNTDVSIRVK
250 260 270 280 290
270 280 290 300 310 320
pF1KB3 FFVEHRGQLKVQLAWPGNIMQHVNRYWKNKHLSPKRLSTGILMYTLASAICEEIHLYGFW
. .. . .. . . . .:.::: . . ::.:::... : : .:::.::.:::
CCDS77 YVLDDFESPQAVYYFHPQYLVNVSRYWLSLGVRAKRISTGLILVTAALELCEEVHLFGFW
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB3 PFGFDPNTREDLPYHYYDKKGTKFTTKWQESHQLPAEFQLLYRMHGEGLTKLTLSHCA
: ..:. . .::::. . : .:.:. . ..:..:. .. . :.
CCDS77 AFPMNPSGLY-ITHHYYDNVKPR-----PGFHAMPSEIFNFLHLHSRGILRVHTGTCSCC
360 370 380 390 400 410
>>CCDS47252.1 ST8SIA4 gene_id:7903|Hs108|chr5 (168 aa)
initn: 296 init1: 208 opt: 300 Z-score: 380.7 bits: 78.0 E(32554): 6.9e-15
Smith-Waterman score: 300; 41.5% identity (80.2% similar) in 106 aa overlap (83-188:64-168)
60 70 80 90 100 110
pF1KB3 YMFHAGFRSQFALKFLDPSFVPITNSLTQELQEKPSKWKFNRTAFLHQRQEILQHVDVIK
.:.. ::.: . :. :..::. .:. .
CCDS47 TQLIGDGELSLSRSLVNSSDKIIRKAGSSIFQHNVEGWKINSSLVLEIRKNILRFLDAER
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB3 NFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLPDVSPIMNKHYNICAVVGNSGILT
. :..:.: . :...:: ... ...::....::::.:::. :.... ::::::::::
CCDS47 DVSVVKSSFKPGDVIHY-VLDRRRTLNISHDLHSLLPEVSPMKNRRFKTCAVVGNSGILL
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB3 GSQCGQEIDKSDFVFRCNFAPTEAFQRDVGRKTNLTTFNPSILEKYYNNLLTIQDRNNFF
:.::.:::. .::.:
CCDS47 DSECGKEIDSHNFVIR
160
380 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:32:51 2016 done: Fri Nov 4 02:32:51 2016
Total Scan time: 1.820 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]