Result of FASTA (ccds) for
pFN21AA1017
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1017, 1015 aa
1>>>pF1KA1017 1015 - 1015 aa - 1015 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5345+/-0.000933; mu= 15.5336+/- 0.056
mean_var=91.4550+/-18.422, 0's: 0 Z-trim(107.4): 21 B-trim: 177 in 1/49
Lambda= 0.134113
statistics sampled from 9557 (9572) to 9557 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.294), width: 16
Scan time: 3.680
The best scores are: opt bits E(32554)
CCDS7837.1 HPS5 gene_id:11234|Hs108|chr11 (1015) 6767 1320.1 0
CCDS7836.1 HPS5 gene_id:11234|Hs108|chr11 (1129) 6767 1320.1 0
CCDS58337.1 TECPR2 gene_id:9895|Hs108|chr14 (1267) 318 72.4 6.8e-12
CCDS32162.1 TECPR2 gene_id:9895|Hs108|chr14 (1411) 318 72.4 7.5e-12
>>CCDS7837.1 HPS5 gene_id:11234|Hs108|chr11 (1015 aa)
initn: 6767 init1: 6767 opt: 6767 Z-score: 7072.1 bits: 1320.1 E(32554): 0
Smith-Waterman score: 6767; 99.9% identity (100.0% similar) in 1015 aa overlap (1-1015:1-1015)
10 20 30 40 50 60
pF1KA1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 SQMEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
910 920 930 940 950 960
970 980 990 1000 1010
pF1KA1 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
970 980 990 1000 1010
>>CCDS7836.1 HPS5 gene_id:11234|Hs108|chr11 (1129 aa)
initn: 6767 init1: 6767 opt: 6767 Z-score: 7071.3 bits: 1320.1 E(32554): 0
Smith-Waterman score: 6767; 99.9% identity (100.0% similar) in 1015 aa overlap (1-1015:115-1129)
10 20 30
pF1KA1 MYVSSEHKGRRVTALCWDTAILRVFVGDHA
::::::::::::::::::::::::::::::
CCDS78 HDDDYVAVATSQGLVVVWELNQERRGKPEQMYVSSEHKGRRVTALCWDTAILRVFVGDHA
90 100 110 120 130 140
40 50 60 70 80 90
pF1KA1 GKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTER
150 160 170 180 190 200
100 110 120 130 140 150
pF1KA1 EKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLL
210 220 230 240 250 260
160 170 180 190 200 210
pF1KA1 SLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSEHCVLTWTERGIYIFIPQNVQVLLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSEHCVLTWTERGIYIFIPQNVQVLLW
270 280 290 300 310 320
220 230 240 250 260 270
pF1KA1 SEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSV
330 340 350 360 370 380
280 290 300 310 320 330
pF1KA1 IASRARKTLTADKLEHLKSQLDHGTYNDLISQMEELILKFEPLDSACSSRRSSISSHESF
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS78 IASRARKTLTADKLEHLKSQLDHGTYNDLISQLEELILKFEPLDSACSSRRSSISSHESF
390 400 410 420 430 440
340 350 360 370 380 390
pF1KA1 SILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQEEDLPDQCCGSHGNED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQEEDLPDQCCGSHGNED
450 460 470 480 490 500
400 410 420 430 440 450
pF1KA1 NVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSP
510 520 530 540 550 560
460 470 480 490 500 510
pF1KA1 DLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKL
570 580 590 600 610 620
520 530 540 550 560 570
pF1KA1 QDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 QDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGIL
630 640 650 660 670 680
580 590 600 610 620 630
pF1KA1 DEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQICSPCAIASGLRNDLAELTTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQICSPCAIASGLRNDLAELTTLC
690 700 710 720 730 740
640 650 660 670 680 690
pF1KA1 LELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKKYFFLLNLKRAKESIKLSYSNSPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKKYFFLLNLKRAKESIKLSYSNSPSV
750 760 770 780 790 800
700 710 720 730 740 750
pF1KA1 WDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDEVPFDSPLLVVYATRLYEKFGESAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 WDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDEVPFDSPLLVVYATRLYEKFGESAL
810 820 830 840 850 860
760 770 780 790 800 810
pF1KA1 RSLIKFFPSILPSDIIQLCHHHPAEFLAYLDSLVKSRPEDQRSSFLESLLQPESLRLDWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RSLIKFFPSILPSDIIQLCHHHPAEFLAYLDSLVKSRPEDQRSSFLESLLQPESLRLDWL
870 880 890 900 910 920
820 830 840 850 860 870
pF1KA1 LLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLILHLIKLPADFITKEKMTDICRSCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLILHLIKLPADFITKEKMTDICRSCG
930 940 950 960 970 980
880 890 900 910 920 930
pF1KA1 FWPGYLILCLELERRREAFTNIVYLNDMSLMEGDNGWIPETVEEWKLLLHLIQSKSTRPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 FWPGYLILCLELERRREAFTNIVYLNDMSLMEGDNGWIPETVEEWKLLLHLIQSKSTRPA
990 1000 1010 1020 1030 1040
940 950 960 970 980 990
pF1KA1 PQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWSLLQECGLALELSEKFTRTCDILRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWSLLQECGLALELSEKFTRTCDILRI
1050 1060 1070 1080 1090 1100
1000 1010
pF1KA1 AEKRQRALIQSMLEKCDRFLWSQQA
:::::::::::::::::::::::::
CCDS78 AEKRQRALIQSMLEKCDRFLWSQQA
1110 1120
>>CCDS58337.1 TECPR2 gene_id:9895|Hs108|chr14 (1267 aa)
initn: 246 init1: 94 opt: 318 Z-score: 327.0 bits: 72.4 E(32554): 6.8e-12
Smith-Waterman score: 324; 30.4% identity (57.7% similar) in 260 aa overlap (3-255:122-366)
10 20 30
pF1KA1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGK
:.. ::. .::: :. ...: :: ::
CCDS58 VAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIHKNS-ITALAWSPNGMKLFSGDDKGK
100 110 120 130 140 150
40 50 60 70 80 90
pF1KA1 VSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREK
. .:. .. . : . : .::::: . ::.:.: ::.: ::...
CCDS58 IVYSSLDLDQG--------LCNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKS
160 170 180 190 200
100 110 120 130 140 150
pF1KA1 FWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLL
.::.. : :..::::.:: :. .. : : .::: :.:... : : .: .: .
CCDS58 VRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAF
210 220 230 240 250 260
160 170 180 190 200
pF1KA1 SLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS----EHCVLTWTERGIYIFIPQNVQ
. : .. .:. . ..: :: .: .: : ::.:.: .::.. :
CCDS58 AGGVKP---FELHPRLESPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQA
270 280 290 300 310
210 220 230 240 250 260
pF1KA1 VLLWSEVK-DIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCL
.. : . :: .:. .::.: :. . .. ..: : . . .: ::
CCDS58 TVAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS--SRPEGLTSTVRDGLEMSGCSERVH
320 330 340 350 360 370
270 280 290 300 310 320
pF1KA1 FQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLISQMEELILKFEPLDSACSSRRSSIS
CCDS58 VQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGSGLLPPGLQATPELGKG
380 390 400 410 420 430
>>CCDS32162.1 TECPR2 gene_id:9895|Hs108|chr14 (1411 aa)
initn: 246 init1: 94 opt: 318 Z-score: 326.3 bits: 72.4 E(32554): 7.5e-12
Smith-Waterman score: 324; 30.4% identity (57.7% similar) in 260 aa overlap (3-255:122-366)
10 20 30
pF1KA1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGK
:.. ::. .::: :. ...: :: ::
CCDS32 VAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIHKNS-ITALAWSPNGMKLFSGDDKGK
100 110 120 130 140 150
40 50 60 70 80 90
pF1KA1 VSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREK
. .:. .. . : . : .::::: . ::.:.: ::.: ::...
CCDS32 IVYSSLDLDQG--------LCNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKS
160 170 180 190 200
100 110 120 130 140 150
pF1KA1 FWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLL
.::.. : :..::::.:: :. .. : : .::: :.:... : : .: .: .
CCDS32 VRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAF
210 220 230 240 250 260
160 170 180 190 200
pF1KA1 SLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS----EHCVLTWTERGIYIFIPQNVQ
. : .. .:. . ..: :: .: .: : ::.:.: .::.. :
CCDS32 AGGVKP---FELHPRLESPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQA
270 280 290 300 310
210 220 230 240 250 260
pF1KA1 VLLWSEVK-DIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCL
.. : . :: .:. .::.: :. . .. ..: : . . .: ::
CCDS32 TVAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS--SRPEGLTSTVRDGLEMSGCSERVH
320 330 340 350 360 370
270 280 290 300 310 320
pF1KA1 FQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLISQMEELILKFEPLDSACSSRRSSIS
CCDS32 VQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGSGLLPPGLQATPELGKG
380 390 400 410 420 430
1015 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:17:42 2016 done: Fri Nov 4 01:17:42 2016
Total Scan time: 3.680 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]