FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5194, 163 aa
  1>>>pF1KB5194 163 - 163 aa - 163 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3269+/-0.00056; mu= 12.8619+/- 0.034
 mean_var=67.1671+/-13.178, 0's: 0 Z-trim(113.3): 4  B-trim: 0 in 0/51
 Lambda= 0.156493
 statistics sampled from 13965 (13969) to 13965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.429), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(32554)
CCDS4171.1 SKP1 gene_id:6500|Hs108|chr5            ( 163) 1102 256.5 5.2e-69
CCDS4172.1 SKP1 gene_id:6500|Hs108|chr5            ( 160) 1029 240.0 4.7e-64


>>CCDS4171.1 SKP1 gene_id:6500|Hs108|chr5                 (163 aa)
 initn: 1102 init1: 1102 opt: 1102  Z-score: 1352.4  bits: 256.5 E(32554): 5.2e-69
Smith-Waterman score: 1102; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KB5 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
               70        80        90       100       110       120

              130       140       150       160   
pF1KB5 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
       :::::::::::::::::::::::::::::::::::::::::::
CCDS41 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
              130       140       150       160   

>>CCDS4172.1 SKP1 gene_id:6500|Hs108|chr5                 (160 aa)
 initn: 1023 init1: 1023 opt: 1029  Z-score: 1263.5  bits: 240.0 E(32554): 4.7e-64
Smith-Waterman score: 1029; 96.9% identity (98.8% similar) in 160 aa overlap (1-160:1-159)

               10        20        30        40        50        60
pF1KB5 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
               70        80        90       100       110       120

              130       140       150       160   
pF1KB5 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
       ::::::::::::::::::::::::::::::::: . .:.:   
CCDS41 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVGS-TQFCL  
              130       140       150        160  




163 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:23:35 2016 done: Thu Nov  3 22:23:36 2016
 Total Scan time:  1.990 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]