Result of FASTA (omim) for
pFN21AB0039
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0039, 512 aa
1>>>pF1KB0039 512 - 512 aa - 512 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9189+/-0.000471; mu= 8.1772+/- 0.030
mean_var=243.5562+/-54.465, 0's: 0 Z-trim(117.0): 337 B-trim: 2824 in 2/54
Lambda= 0.082182
statistics sampled from 28209 (28692) to 28209 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.336), width: 16
Scan time: 10.430
The best scores are: opt bits E(85289)
NP_001166110 (OMIM: 601074) CUGBP Elav-like family ( 512) 3340 409.6 1.1e-113
XP_016872595 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 513) 3328 408.2 3e-113
XP_016872596 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 513) 3328 408.2 3e-113
XP_016872594 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 513) 3328 408.2 3e-113
XP_011518152 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 513) 3328 408.2 3e-113
XP_016872592 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 514) 3316 406.7 8.2e-113
XP_016872590 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 514) 3316 406.7 8.2e-113
XP_016872593 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 514) 3316 406.7 8.2e-113
XP_011518154 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 514) 3316 406.7 8.2e-113
NP_001317201 (OMIM: 601074) CUGBP Elav-like family ( 514) 3316 406.7 8.2e-113
XP_016872600 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 3285 403.1 1e-111
XP_016872603 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 3285 403.1 1e-111
XP_016872602 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 3285 403.1 1e-111
XP_016872601 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 509) 3285 403.1 1e-111
XP_016872598 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 510) 3273 401.6 2.8e-111
XP_016872597 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 510) 3273 401.6 2.8e-111
XP_016872599 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 510) 3273 401.6 2.8e-111
NP_001166111 (OMIM: 601074) CUGBP Elav-like family ( 485) 3158 388.0 3.4e-107
XP_016872619 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
XP_016872613 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
XP_016872618 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
XP_016872617 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
XP_016872615 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
XP_016872614 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
XP_016872620 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
XP_016872616 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
NP_001020767 (OMIM: 601074) CUGBP Elav-like family ( 486) 3146 386.6 9.2e-107
XP_016872621 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 486) 3146 386.6 9.2e-107
XP_016872611 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_016872606 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_016872609 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_016872605 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_016872612 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_011518159 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_011518150 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_016872610 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_016872607 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_011518157 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_011518158 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_011518160 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_016872604 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_011518156 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
XP_016872608 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 487) 3134 385.1 2.5e-106
NP_006551 (OMIM: 601074) CUGBP Elav-like family me ( 482) 3103 381.4 3.1e-105
XP_016872624 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 482) 3103 381.4 3.1e-105
XP_016872623 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 483) 3091 380.0 8.4e-105
XP_016872622 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 483) 3091 380.0 8.4e-105
NP_941989 (OMIM: 601074) CUGBP Elav-like family me ( 483) 3091 380.0 8.4e-105
XP_011518161 (OMIM: 601074) PREDICTED: CUGBP Elav- ( 483) 3091 380.0 8.4e-105
XP_016871037 (OMIM: 602538) PREDICTED: CUGBP Elav- ( 515) 2628 325.2 2.9e-88
>>NP_001166110 (OMIM: 601074) CUGBP Elav-like family mem (512 aa)
initn: 3340 init1: 3340 opt: 3340 Z-score: 2161.8 bits: 409.6 E(85289): 1.1e-113
Smith-Waterman score: 3340; 100.0% identity (100.0% similar) in 512 aa overlap (1-512:1-512)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 MKPADSEKNNVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKPADSEKNNVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 QNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 GMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS
430 440 450 460 470 480
490 500 510
pF1KB0 AQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
::::::::::::::::::::::::::::::::
NP_001 AQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>XP_016872595 (OMIM: 601074) PREDICTED: CUGBP Elav-like (513 aa)
initn: 2446 init1: 2446 opt: 3328 Z-score: 2154.1 bits: 408.2 E(85289): 3e-113
Smith-Waterman score: 3328; 99.8% identity (99.8% similar) in 513 aa overlap (1-512:1-513)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 AGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV
430 440 450 460 470 480
480 490 500 510
pF1KB0 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
:::::::::::::::::::::::::::::::::
XP_016 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>XP_016872596 (OMIM: 601074) PREDICTED: CUGBP Elav-like (513 aa)
initn: 2446 init1: 2446 opt: 3328 Z-score: 2154.1 bits: 408.2 E(85289): 3e-113
Smith-Waterman score: 3328; 99.8% identity (99.8% similar) in 513 aa overlap (1-512:1-513)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 AGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV
430 440 450 460 470 480
480 490 500 510
pF1KB0 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
:::::::::::::::::::::::::::::::::
XP_016 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>XP_016872594 (OMIM: 601074) PREDICTED: CUGBP Elav-like (513 aa)
initn: 2446 init1: 2446 opt: 3328 Z-score: 2154.1 bits: 408.2 E(85289): 3e-113
Smith-Waterman score: 3328; 99.8% identity (99.8% similar) in 513 aa overlap (1-512:1-513)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 AGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV
430 440 450 460 470 480
480 490 500 510
pF1KB0 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
:::::::::::::::::::::::::::::::::
XP_016 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>XP_011518152 (OMIM: 601074) PREDICTED: CUGBP Elav-like (513 aa)
initn: 2446 init1: 2446 opt: 3328 Z-score: 2154.1 bits: 408.2 E(85289): 3e-113
Smith-Waterman score: 3328; 99.8% identity (99.8% similar) in 513 aa overlap (1-512:1-513)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 AGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV
430 440 450 460 470 480
480 490 500 510
pF1KB0 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
:::::::::::::::::::::::::::::::::
XP_011 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>XP_016872592 (OMIM: 601074) PREDICTED: CUGBP Elav-like (514 aa)
initn: 2235 init1: 1263 opt: 3316 Z-score: 2146.4 bits: 406.7 E(85289): 8.2e-113
Smith-Waterman score: 3316; 99.6% identity (99.6% similar) in 514 aa overlap (1-512:1-514)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSS-GSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_016 AQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
430 440 450 460 470 480
480 490 500 510
pF1KB0 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
::::::::::::::::::::::::::::::::::
XP_016 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>XP_016872590 (OMIM: 601074) PREDICTED: CUGBP Elav-like (514 aa)
initn: 2235 init1: 1263 opt: 3316 Z-score: 2146.4 bits: 406.7 E(85289): 8.2e-113
Smith-Waterman score: 3316; 99.6% identity (99.6% similar) in 514 aa overlap (1-512:1-514)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSS-GSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_016 AQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
430 440 450 460 470 480
480 490 500 510
pF1KB0 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
::::::::::::::::::::::::::::::::::
XP_016 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>XP_016872593 (OMIM: 601074) PREDICTED: CUGBP Elav-like (514 aa)
initn: 2235 init1: 1263 opt: 3316 Z-score: 2146.4 bits: 406.7 E(85289): 8.2e-113
Smith-Waterman score: 3316; 99.6% identity (99.6% similar) in 514 aa overlap (1-512:1-514)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSS-GSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_016 AQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
430 440 450 460 470 480
480 490 500 510
pF1KB0 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
::::::::::::::::::::::::::::::::::
XP_016 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>XP_011518154 (OMIM: 601074) PREDICTED: CUGBP Elav-like (514 aa)
initn: 2235 init1: 1263 opt: 3316 Z-score: 2146.4 bits: 406.7 E(85289): 8.2e-113
Smith-Waterman score: 3316; 99.6% identity (99.6% similar) in 514 aa overlap (1-512:1-514)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSS-GSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_011 AQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
430 440 450 460 470 480
480 490 500 510
pF1KB0 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
::::::::::::::::::::::::::::::::::
XP_011 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
>>NP_001317201 (OMIM: 601074) CUGBP Elav-like family mem (514 aa)
initn: 2235 init1: 1263 opt: 3316 Z-score: 2146.4 bits: 406.7 E(85289): 8.2e-113
Smith-Waterman score: 3316; 99.6% identity (99.6% similar) in 514 aa overlap (1-512:1-514)
10 20 30 40 50 60
pF1KB0 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAFKLDFLPEMMVDHCSLNSSPVSKKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ
70 80 90 100 110 120
130 140 150 160 170
pF1KB0 MKPADSEKNN-VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 AQNTPSGTNALTTSSSPLSVLTSS-GSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
NP_001 AQNTPSGTNALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB0 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGMAALNGGLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB0 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP
430 440 450 460 470 480
480 490 500 510
pF1KB0 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
::::::::::::::::::::::::::::::::::
NP_001 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY
490 500 510
512 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 20:21:53 2016 done: Thu Nov 3 20:21:55 2016
Total Scan time: 10.430 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]