(Circular) (Six-base) MAPSORT of: pFN21AB5585.seq Check: 4217 from: 1 to: 5680 pFN21AB5585 5680 bp With 182 enzymes: SgfI * October 20, 2009 10:33 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3490 278 Size: 53 83 186 936 1954 2468 Fragments arranged by size: 2468 1954 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3023 1937 Size: 1086 4594 Acc65I G'GTAC_C Cuts at: 3001 3001 Size: 5680 AclI AA'CG_TT Cuts at: 1563 3807 4180 1563 Size: 2244 373 3063 Fragments arranged by size: 3063 2244 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3743 5127 5395 1632 Size: 2111 1384 268 1917 Fragments arranged by size: 2111 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5483 AflIII A'CryG_T Cuts at: 1203 2826 4579 5556 1203 Size: 1623 1753 977 1327 Fragments arranged by size: 1753 1623 1327 977 AgeI A'CCGG_T Cuts at: 4511 4511 Size: 5680 AhdI GACnn_n'nnGTC Cuts at: 4409 4409 Size: 5680 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5680 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5680 AlwNI CAG_nnn'CTG Cuts at: 2176 3423 4995 2176 Size: 1247 1572 2861 Fragments arranged by size: 2861 1572 1247 ApaLI G'TGCA_C Cuts at: 3737 4893 3737 Size: 1156 4524 ApoI r'AATT_y Cuts at: 1493 2033 2395 2768 2989 3215 3367 5476 1493 Size: 540 362 373 221 226 152 2109 1697 Fragments arranged by size: 2109 1697 540 373 362 226 221 152 AseI AT'TA_AT Cuts at: 160 1032 4234 160 Size: 872 3202 1606 Fragments arranged by size: 3202 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5680 AvaI C'yCGr_G Cuts at: 1870 1943 3005 1870 Size: 73 1062 4545 Fragments arranged by size: 4545 1062 73 BamHI G'GATC_C Cuts at: 3010 3377 3010 Size: 367 5313 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3001 4456 618 Size: 325 217 627 1214 1455 1842 Fragments arranged by size: 1842 1455 1214 627 325 217 BanII G_rGCy'C Cuts at: 1391 2999 1391 Size: 1608 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2304 928 Size: 971 405 4304 Fragments arranged by size: 4304 971 405 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3871 3905 1903 Size: 34 1934 34 3678 Fragments arranged by size: 3678 1934 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3572 4782 3572 Size: 1210 4470 BclI T'GATC_A Cuts at: 1548 2364 1548 Size: 816 4864 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4291 136 Size: 107 122 71 631 605 2619 1525 Fragments arranged by size: 2619 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5675 5675 Size: 5680 BlpI GC'TnA_GC Cuts at: 3097 3097 Size: 5680 Bme1580I G_kGCm'C Cuts at: 1790 3741 4897 1790 Size: 1951 1156 2573 Fragments arranged by size: 2573 1951 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5680 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2164 3411 4369 Size: 416 53 83 399 24 747 1247 958 Cuts at: 4369 442 Size: 1753 Fragments arranged by size: 1753 1247 958 747 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2571 1056 Size: 1515 4165 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4340 1239 Size: 3101 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3805 4670 4968 3805 Size: 865 298 4517 Fragments arranged by size: 4517 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4343 882 Size: 617 2844 2219 Fragments arranged by size: 2844 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3471 493 Size: 711 2267 2702 Fragments arranged by size: 2702 2267 711 BsaBI GATnn'nnATC Cuts at: 2111 5674 2111 Size: 3563 2117 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2446 3487 3869 4504 Size: 53 83 186 936 913 1041 382 635 Cuts at: 4504 275 Size: 1451 Fragments arranged by size: 1451 1041 936 913 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4113 4511 4785 4932 5343 4113 Size: 398 274 147 411 4450 Fragments arranged by size: 4450 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5455 Fragments arranged by size: 5455 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5680 BseYI C'CCAG_C Cuts at: 4883 5379 4883 Size: 496 5184 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5107 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3130 3891 4919 1540 Size: 275 186 1129 761 1028 2301 Fragments arranged by size: 2301 1129 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3741 3826 4897 3741 Size: 85 1071 4524 Fragments arranged by size: 4524 1071 85 BsmI GAATG_Cn' Cuts at: 2850 3191 3284 2850 Size: 341 93 5246 Fragments arranged by size: 5246 341 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2999 3741 3826 4897 1391 Size: 399 1209 742 85 1071 2174 Fragments arranged by size: 2174 1209 1071 742 399 85 BspEI T'CCGG_A Cuts at: 5343 5343 Size: 5680 BspHI T'CATG_A Cuts at: 3569 5299 3569 Size: 1730 3950 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3035 844 Size: 2191 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3567 1394 Size: 429 1744 3507 Fragments arranged by size: 3507 1744 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4175 4349 65 Size: 1183 2927 174 1396 Fragments arranged by size: 2927 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4324 4511 1700 Size: 110 2514 187 2869 Fragments arranged by size: 2869 2514 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5680 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5680 BssSI C'ACGA_G Cuts at: 3740 4752 3740 Size: 1012 4668 BstAPI GCAn_nnn'nTGC Cuts at: 794 2771 794 Size: 1977 3703 BstBI TT'CG_AA Cuts at: 4484 4484 Size: 5680 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5680 BstYI r'GATC_y Cuts at: 1972 2275 3010 3377 3762 3779 5231 5317 5329 Size: 303 735 367 385 17 1452 86 12 Cuts at: 5329 5675 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 735 385 367 346 303 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2663 513 Size: 552 939 659 3530 Fragments arranged by size: 3530 939 659 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2789 487 Size: 683 56 1563 3378 Fragments arranged by size: 3378 1563 683 56 BtsI GCAGTG_nn' Cuts at: 2142 2553 3196 3990 4010 2142 Size: 411 643 794 20 3812 Fragments arranged by size: 3812 794 643 411 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5680 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2719 2754 529 Size: 35 2155 35 3455 Fragments arranged by size: 3455 2155 35 35 DraI TTT'AAA Cuts at: 2984 2984 Size: 5680 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4687 809 Size: 507 3371 1802 Fragments arranged by size: 3371 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2484 3127 4016 Size: 54 1425 50 275 18 654 643 889 Cuts at: 4016 5645 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 654 643 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3127 1537 Size: 275 1315 4090 Fragments arranged by size: 4090 1315 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2309 2941 3610 1353 Size: 956 632 669 3423 Fragments arranged by size: 3423 956 669 632 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4267 4641 4787 387 Size: 1064 138 2678 374 146 1280 Fragments arranged by size: 2678 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3743 4340 5127 5395 1239 Size: 393 2111 597 787 268 1524 Fragments arranged by size: 2111 1524 787 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2285 2862 2285 Size: 577 5103 EcoRI G'AATT_C Cuts at: 2033 2989 3367 2033 Size: 956 378 4346 Fragments arranged by size: 4346 956 378 FspI TGC'GCA Cuts at: 4186 4186 Size: 5680 HaeII r_GCGC'y Cuts at: 1678 4827 1678 Size: 3149 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2277 2309 2603 2635 4321 Size: 32 135 32 705 32 294 32 1686 Cuts at: 4321 4353 4395 4427 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1686 705 294 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3024 3270 669 Size: 988 281 1086 246 3079 Fragments arranged by size: 3079 1086 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5680 HpaI GTT'AAC Cuts at: 3270 3270 Size: 5680 KpnI G_GTAC'C Cuts at: 3005 3005 Size: 5680 MfeI C'AATT_G Cuts at: 3279 3279 Size: 5680 MluI A'CGCG_T Cuts at: 5556 5556 Size: 5680 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2023 4794 4978 1305 Size: 718 2771 184 2007 Fragments arranged by size: 2771 2007 718 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2486 10 Size: 54 1425 343 654 3204 Fragments arranged by size: 3204 1425 654 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2877 3638 3997 4156 518 Size: 648 1711 761 359 159 2042 Fragments arranged by size: 2042 1711 761 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2019 3096 3773 4921 5166 1606 Size: 413 1077 677 1148 245 2120 Fragments arranged by size: 2120 1148 1077 677 413 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2663 513 Size: 552 939 659 3530 Fragments arranged by size: 3530 939 659 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5680 NheI G'CTAG_C Cuts at: 1052 2567 1052 Size: 1515 4165 NotI GC'GGCC_GC Cuts at: 3127 3127 Size: 5680 NspI r_CATG'y Cuts at: 1132 1229 2830 3038 4583 1132 Size: 97 1601 208 1545 2229 Fragments arranged by size: 2229 1601 1545 208 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5680 PciI A'CATG_T Cuts at: 2826 4579 2826 Size: 1753 3927 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5680 PmeI GTTT'AAAC Cuts at: 2984 2984 Size: 5680 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3749 3781 5262 5294 3749 Size: 32 1481 32 4135 Fragments arranged by size: 4135 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2285 2862 2285 Size: 577 5103 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5680 PsiI TTA'TAA Cuts at: 3250 3250 Size: 5680 PstI C_TGCA'G Cuts at: 830 2767 3032 830 Size: 1937 265 3478 Fragments arranged by size: 3478 1937 265 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5680 SalI G'TCGA_C Cuts at: 1936 3022 1936 Size: 1086 4594 SbfI CC_TGCA'GG Cuts at: 3032 3032 Size: 5680 ScaI AGT'ACT Cuts at: 3928 5640 3928 Size: 1712 3968 SfcI C'TryA_G Cuts at: 826 1045 2763 3028 4163 4844 5035 826 Size: 219 1718 265 1135 681 191 1471 Fragments arranged by size: 1718 1471 1135 681 265 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5680 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5680 SmaI CCC'GGG Cuts at: 1872 3007 1872 Size: 1135 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3784 4685 4947 820 Size: 197 926 1841 901 262 1553 Fragments arranged by size: 1841 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3471 493 Size: 2978 2702 SpeI A'CTAG_T Cuts at: 152 2266 152 Size: 2114 3566 SphI G_CATG'C Cuts at: 1132 3038 1132 Size: 1906 3774 SspI AAT'ATT Cuts at: 5 52 3604 5 Size: 47 3552 2081 Fragments arranged by size: 3552 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5680 StyI C'CwwG_G Cuts at: 513 1065 2004 2025 2663 3119 513 Size: 552 939 21 638 456 3074 Fragments arranged by size: 3074 939 638 552 456 21 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3707 3724 3877 4062 4507 325 Size: 1255 2127 17 153 185 445 1498 Fragments arranged by size: 2127 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2263 2341 2493 Size: 274 80 33 51 1443 286 78 152 Cuts at: 2493 2778 3926 5638 96 Size: 285 1148 1712 138 Fragments arranged by size: 1712 1443 1148 286 285 274 152 138 80 78 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5640 5672 5640 Size: 32 5648 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5680 XbaI T'CTAG_A Cuts at: 3016 3016 Size: 5680 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5680 XmaI C'CCGG_G Cuts at: 1870 3005 1870 Size: 1135 4545 XmnI GAAnn'nnTTC Cuts at: 3809 3809 Size: 5680 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3488 276 Size: 53 83 186 936 1954 2468 Fragments arranged by size: 2468 1954 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI