Restriction map for
pFN21AB5439
(Circular) (Six-base) MAPSORT of: pFN21AB5439.seq Check: 5424 from: 1 to: 5326
pFN21AB5439 5326 bp
With 182 enzymes: SgfI *
January 16, 2009 15:25 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3136 278
Size: 53 83 186 936 1600 2468
Fragments arranged by size:
2468 1600 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2669 1937
Size: 732 4594
Acc65I G'GTAC_C
Cuts at: 2647 2647
Size: 5326
AclI AA'CG_TT
Cuts at: 1563 3453 3826 1563
Size: 1890 373 3063
Fragments arranged by size:
3063 1890 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2051 3389 4773 5041 1632
Size: 419 1338 1384 268 1917
Fragments arranged by size:
1917 1384 1338 419 268
AflII C'TTAA_G
Cuts at: 820 1017 2525 820
Size: 197 1508 3621
Fragments arranged by size:
3621 1508 197
AflIII A'CryG_T
Cuts at: 1203 4225 5202 1203
Size: 3022 977 1327
Fragments arranged by size:
3022 1327 977
AgeI A'CCGG_T
Cuts at: 4157 4157
Size: 5326
AhdI GACnn_n'nnGTC
Cuts at: 4055 4055
Size: 5326
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5326
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2269 2632 1184
Size: 1085 363 3878
Fragments arranged by size:
3878 1085 363
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2483 2515 2483
Size: 32 5294
AlwNI CAG_nnn'CTG
Cuts at: 3069 4641 3069
Size: 1572 3754
ApaLI G'TGCA_C
Cuts at: 3383 4539 3383
Size: 1156 4170
ApoI r'AATT_y
Cuts at: 1493 2099 2558 2635 2861 3013 5122 1493
Size: 606 459 77 226 152 2109 1697
Fragments arranged by size:
2109 1697 606 459 226 152 77
AseI AT'TA_AT
Cuts at: 160 1032 3880 160
Size: 872 2848 1606
Fragments arranged by size:
2848 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5326
AvaI C'yCGr_G
Cuts at: 1870 1943 2340 2651 1870
Size: 73 397 311 4545
Fragments arranged by size:
4545 397 311 73
BamHI G'GATC_C
Cuts at: 2656 3023 2656
Size: 367 4959
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2647 4102 618
Size: 325 217 627 860 1455 1842
Fragments arranged by size:
1842 1455 860 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2645 1391
Size: 1254 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2072 928
Size: 971 173 4182
Fragments arranged by size:
4182 971 173
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3517 3551 1903
Size: 34 1580 34 3678
Fragments arranged by size:
3678 1580 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3218 4428 3218
Size: 1210 4116
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5326
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2477 3937 136
Size: 107 122 71 631 605 805 1460 1525
Fragments arranged by size:
1525 1460 805 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5321 5321
Size: 5326
BlpI GC'TnA_GC
Cuts at: 2743 2743
Size: 5326
Bme1580I G_kGCm'C
Cuts at: 1790 2422 3387 4543 1790
Size: 632 965 1156 2573
Fragments arranged by size:
2573 1156 965 632
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5326
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3057 4015 442
Size: 416 53 83 399 24 1640 958 1753
Fragments arranged by size:
1753 1640 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5326
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2076 2329 3986 1239
Size: 837 253 1657 2579
Fragments arranged by size:
2579 1657 837 253
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3451 4316 4614 3451
Size: 865 298 4163
Fragments arranged by size:
4163 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2456 3989 882
Size: 617 957 1533 2219
Fragments arranged by size:
2219 1533 957 617
BsaAI yAC'GTr
Cuts at: 493 1204 3117 493
Size: 711 1913 2702
Fragments arranged by size:
2702 1913 711
BsaBI GATnn'nnATC
Cuts at: 5320 5320
Size: 5326
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3133 3515 4150 275
Size: 53 83 186 936 1600 382 635 1451
Fragments arranged by size:
1600 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3759 4157 4431 4578 4989 3759
Size: 398 274 147 411 4096
Fragments arranged by size:
4096 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2483 2513 1178
Size: 30 165 30 1080 30 3991
Fragments arranged by size:
3991 1080 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5326
BseYI C'CCAG_C
Cuts at: 4529 5025 4529
Size: 496 4830
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2265 1163
Size: 573 529 4224
Fragments arranged by size:
4224 573 529
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2776 3537 4565 1540
Size: 275 186 775 761 1028 2301
Fragments arranged by size:
2301 1028 775 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3387 3472 4543 3387
Size: 85 1071 4170
Fragments arranged by size:
4170 1071 85
BsmI GAATG_Cn'
Cuts at: 2524 2837 2930 2524
Size: 313 93 4920
Fragments arranged by size:
4920 313 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2422 2645 3387 3472 4543 1391
Size: 399 632 223 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 632 399 223 85
BspEI T'CCGG_A
Cuts at: 4989 4989
Size: 5326
BspHI T'CATG_A
Cuts at: 2076 3215 4945 2076
Size: 1139 1730 2457
Fragments arranged by size:
2457 1730 1139
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2681 844
Size: 1837 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3213 1394
Size: 429 1390 3507
Fragments arranged by size:
3507 1390 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3821 3995 65
Size: 1183 2573 174 1396
Fragments arranged by size:
2573 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3970 4157 1700
Size: 110 2160 187 2869
Fragments arranged by size:
2869 2160 187 110
BsrGI T'GTAC_A
Cuts at: 96 2550 96
Size: 2454 2872
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5326
BssSI C'ACGA_G
Cuts at: 3386 4398 3386
Size: 1012 4314
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2519 794
Size: 1725 3601
BstBI TT'CG_AA
Cuts at: 4130 4130
Size: 5326
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5326
BstXI CCAn_nnnn'nTGG
Cuts at: 2488 2488
Size: 5326
BstYI r'GATC_y
Cuts at: 1972 2344 2656 3023 3408 3425 4877 4963 4975
Size: 372 312 367 385 17 1452 86 12
Cuts at: 4975 5321 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 385 372 367 346 312 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4774
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4587
Fragments arranged by size:
4587 683 56
BtsI GCAGTG_nn'
Cuts at: 2842 3636 3656 2842
Size: 794 20 4512
Fragments arranged by size:
4512 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5326
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5291
DraI TTT'AAA
Cuts at: 2630 2630
Size: 5326
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2171 4333 809
Size: 507 855 2162 1802
Fragments arranged by size:
2162 1802 855 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2406 2773 3662
Size: 54 1425 50 275 18 576 367 889
Cuts at: 3662 5291 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 576 367 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2773 1537
Size: 275 961 4090
Fragments arranged by size:
4090 961 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3256 1353
Size: 1903 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3913 4287 4433 387
Size: 1064 138 2324 374 146 1280
Fragments arranged by size:
2324 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2051 2076 2329 3389 3986 4773 5041
Size: 393 419 25 253 1060 597 787 268
Cuts at: 5041 1239
Size: 1524
Fragments arranged by size:
1524 1060 787 597 419 393 268 253
25
EcoRI G'AATT_C
Cuts at: 2635 3013 2635
Size: 378 4948
FspI TGC'GCA
Cuts at: 3832 3832
Size: 5326
HaeII r_GCGC'y
Cuts at: 1678 4473 1678
Size: 2795 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3967 3999 4041 4073 1373
Size: 32 135 32 2395 32 42 32 2626
Fragments arranged by size:
2626 2395 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2670 2916 669
Size: 988 281 732 246 3079
Fragments arranged by size:
3079 988 732 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5326
HpaI GTT'AAC
Cuts at: 2916 2916
Size: 5326
KpnI G_GTAC'C
Cuts at: 2651 2651
Size: 5326
MfeI C'AATT_G
Cuts at: 2925 2925
Size: 5326
MluI A'CGCG_T
Cuts at: 5202 5202
Size: 5326
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4440 4624 1305
Size: 3135 184 2007
Fragments arranged by size:
3135 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2408 10
Size: 54 1425 343 576 2928
Fragments arranged by size:
2928 1425 576 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2486 3284 3643 3802 518
Size: 648 1320 798 359 159 2042
Fragments arranged by size:
2042 1320 798 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2742 3419 4567 4812 1606
Size: 1136 677 1148 245 2120
Fragments arranged by size:
2120 1148 1136 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4774
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5326
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5326
NotI GC'GGCC_GC
Cuts at: 2773 2773
Size: 5326
NspI r_CATG'y
Cuts at: 1132 1229 2684 4229 1132
Size: 97 1455 1545 2229
Fragments arranged by size:
2229 1545 1455 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5326
PciI A'CATG_T
Cuts at: 4225 4225
Size: 5326
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5326
PmeI GTTT'AAAC
Cuts at: 2630 2630
Size: 5326
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2483 2515 3395 3427 4908 4940 2483
Size: 32 880 32 1481 32 2869
Fragments arranged by size:
2869 1481 880 32 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5326
PsiI TTA'TAA
Cuts at: 2896 2896
Size: 5326
PstI C_TGCA'G
Cuts at: 830 2621 2678 830
Size: 1791 57 3478
Fragments arranged by size:
3478 1791 57
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5326
SalI G'TCGA_C
Cuts at: 1936 2668 1936
Size: 732 4594
SbfI CC_TGCA'GG
Cuts at: 2678 2678
Size: 5326
ScaI AGT'ACT
Cuts at: 3574 5286 3574
Size: 1712 3614
SfcI C'TryA_G
Cuts at: 826 1045 2236 2434 2617 2674 3809 4490 4681
Size: 219 1191 198 183 57 1135 681 191
Cuts at: 4681 826
Size: 1471
Fragments arranged by size:
1471 1191 1135 681 219 198 191 183
57
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5326
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5326
SmaI CCC'GGG
Cuts at: 1872 2653 1872
Size: 781 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2525 3430 4331 4593 820
Size: 197 926 582 905 901 262 1553
Fragments arranged by size:
1553 926 905 901 582 262 197
SnaBI TAC'GTA
Cuts at: 493 3117 493
Size: 2624 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5326
SphI G_CATG'C
Cuts at: 1132 2684 1132
Size: 1552 3774
SspI AAT'ATT
Cuts at: 5 52 3250 5
Size: 47 3198 2081
Fragments arranged by size:
3198 2081 47
StuI AGG'CCT
Cuts at: 1517 2426 2603 1517
Size: 909 177 4240
Fragments arranged by size:
4240 909 177
StyI C'CwwG_G
Cuts at: 513 1065 2145 2472 2598 2765 513
Size: 552 1080 327 126 167 3074
Fragments arranged by size:
3074 1080 552 327 167 126
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3353 3370 3523 3708 4153 325
Size: 1255 1773 17 153 185 445 1498
Fragments arranged by size:
1773 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2112 2550 3572
Size: 274 80 33 51 1443 135 438 1022
Cuts at: 3572 5284 96
Size: 1712 138
Fragments arranged by size:
1712 1443 1022 438 274 138 135 80
51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5286 5318 5286
Size: 32 5294
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5326
XbaI T'CTAG_A
Cuts at: 2662 2662
Size: 5326
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2152 2152
Size: 5326
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5326
XmaI C'CCGG_G
Cuts at: 1870 2651 1870
Size: 781 4545
XmnI GAAnn'nnTTC
Cuts at: 3455 3455
Size: 5326
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3134 276
Size: 53 83 186 936 1600 2468
Fragments arranged by size:
2468 1600 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PmeI
PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII
EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI
PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII
SanDI SapI SexAI SfiI SfoI SrfI SwaI