(Circular) (Six-base) MAPSORT of: pFN21AB5341.seq Check: 447 from: 1 to: 5743 pFN21AB5341 5743 bp With 182 enzymes: SgfI * January 16, 2009 15:25 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3553 278 Size: 53 83 186 936 2017 2468 Fragments arranged by size: 2468 2017 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3086 1937 Size: 1149 4594 Acc65I G'GTAC_C Cuts at: 3064 3064 Size: 5743 AclI AA'CG_TT Cuts at: 1563 3870 4243 1563 Size: 2307 373 3063 Fragments arranged by size: 3063 2307 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2301 2723 3806 5190 5458 1632 Size: 669 422 1083 1384 268 1917 Fragments arranged by size: 1917 1384 1083 669 422 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5546 AflIII A'CryG_T Cuts at: 1203 4642 5619 1203 Size: 3439 977 1327 Fragments arranged by size: 3439 1327 977 AgeI A'CCGG_T Cuts at: 4574 4574 Size: 5743 AhdI GACnn_n'nnGTC Cuts at: 4472 4472 Size: 5743 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5743 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5743 AlwNI CAG_nnn'CTG Cuts at: 2886 3486 5058 2886 Size: 600 1572 3571 Fragments arranged by size: 3571 1572 600 ApaI G_GGCC'C Cuts at: 2580 2580 Size: 5743 ApaLI G'TGCA_C Cuts at: 3800 4956 3800 Size: 1156 4587 ApoI r'AATT_y Cuts at: 1493 3052 3278 3430 5539 1493 Size: 1559 226 152 2109 1697 Fragments arranged by size: 2109 1697 1559 226 152 AseI AT'TA_AT Cuts at: 160 1032 4297 160 Size: 872 3265 1606 Fragments arranged by size: 3265 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5743 AvaI C'yCGr_G Cuts at: 1870 1943 2115 3068 1870 Size: 73 172 953 4545 Fragments arranged by size: 4545 953 172 73 BamHI G'GATC_C Cuts at: 3073 3440 3073 Size: 367 5376 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3064 4519 618 Size: 325 217 627 1277 1455 1842 Fragments arranged by size: 1842 1455 1277 627 325 217 BanII G_rGCy'C Cuts at: 1391 2239 2302 2580 3062 1391 Size: 848 63 278 482 4072 Fragments arranged by size: 4072 848 482 278 63 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2632 928 Size: 971 733 4039 Fragments arranged by size: 4039 971 733 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3934 3968 1903 Size: 34 1997 34 3678 Fragments arranged by size: 3678 1997 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2486 3635 4845 2486 Size: 1149 1210 3384 Fragments arranged by size: 3384 1210 1149 BclI T'GATC_A Cuts at: 1548 1548 Size: 5743 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4354 136 Size: 107 122 71 631 605 2682 1525 Fragments arranged by size: 2682 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2436 5738 2436 Size: 3302 2441 BlpI GC'TnA_GC Cuts at: 3160 3160 Size: 5743 Bme1580I G_kGCm'C Cuts at: 1790 2580 3804 4960 1790 Size: 790 1224 1156 2573 Fragments arranged by size: 2573 1224 1156 790 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5743 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2265 2769 2852 Size: 416 53 83 399 24 848 504 83 Cuts at: 2852 2900 3474 4432 442 Size: 48 574 958 1753 Fragments arranged by size: 1753 958 848 574 504 416 399 83 83 53 48 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5743 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2108 2205 2392 2684 2695 2798 4403 1239 Size: 869 97 187 292 11 103 1605 2579 Fragments arranged by size: 2579 1605 869 292 187 103 97 11 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3868 4733 5031 3868 Size: 865 298 4580 Fragments arranged by size: 4580 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4406 882 Size: 617 2907 2219 Fragments arranged by size: 2907 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3534 493 Size: 711 2330 2702 Fragments arranged by size: 2702 2330 711 BsaBI GATnn'nnATC Cuts at: 5737 5737 Size: 5743 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3550 3932 4567 275 Size: 53 83 186 936 2017 382 635 1451 Fragments arranged by size: 2017 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4176 4574 4848 4995 5406 4176 Size: 398 274 147 411 4513 Fragments arranged by size: 4513 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2876 2906 1178 Size: 30 165 30 1473 30 4015 Fragments arranged by size: 4015 1473 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2033 2057 2060 2546 2964 1186 Size: 847 24 3 486 418 3965 Fragments arranged by size: 3965 847 486 418 24 3 BseYI C'CCAG_C Cuts at: 4946 5442 4946 Size: 496 5247 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5170 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3193 3954 4982 1540 Size: 275 186 1192 761 1028 2301 Fragments arranged by size: 2301 1192 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2239 2302 2742 3804 3889 4960 2239 Size: 63 440 1062 85 1071 3022 Fragments arranged by size: 3022 1071 1062 440 85 63 BsmI GAATG_Cn' Cuts at: 3254 3347 3254 Size: 93 5650 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2239 2302 2580 2742 3062 3804 3889 Size: 399 449 63 278 162 320 742 85 Cuts at: 3889 4960 1391 Size: 1071 2174 Fragments arranged by size: 2174 1071 742 449 399 320 278 162 85 63 BspEI T'CCGG_A Cuts at: 5406 5406 Size: 5743 BspHI T'CATG_A Cuts at: 3632 5362 3632 Size: 1730 4013 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2868 3098 844 Size: 2024 230 3489 Fragments arranged by size: 3489 2024 230 BsrBI CCG'CTC Cuts at: 1394 1823 3630 1394 Size: 429 1807 3507 Fragments arranged by size: 3507 1807 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4238 4412 65 Size: 1183 2990 174 1396 Fragments arranged by size: 2990 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2064 4387 4574 1700 Size: 110 254 2323 187 2869 Fragments arranged by size: 2869 2323 254 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5743 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5743 BssSI C'ACGA_G Cuts at: 3803 4815 3803 Size: 1012 4731 BstAPI GCAn_nnn'nTGC Cuts at: 794 2696 794 Size: 1902 3841 BstBI TT'CG_AA Cuts at: 4547 4547 Size: 5743 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5743 BstYI r'GATC_y Cuts at: 1972 2070 2227 2436 2770 3073 3440 3825 3842 Size: 98 157 209 334 303 367 385 17 Cuts at: 3842 5294 5380 5392 5738 1972 Size: 1452 86 12 346 1977 Fragments arranged by size: 1977 1452 385 367 346 334 303 209 157 98 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2868 2868 Size: 5743 BtgI C'CryG_G Cuts at: 513 1065 2004 2316 2488 513 Size: 552 939 312 172 3768 Fragments arranged by size: 3768 939 552 312 172 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5004 Fragments arranged by size: 5004 683 56 BtsI GCAGTG_nn' Cuts at: 2686 3259 4053 4073 2686 Size: 573 794 20 4356 Fragments arranged by size: 4356 794 573 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5743 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5708 DraI TTT'AAA Cuts at: 3047 3047 Size: 5743 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4750 809 Size: 507 3434 1802 Fragments arranged by size: 3434 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2266 3190 4079 Size: 54 1425 50 275 18 436 924 889 Cuts at: 4079 5708 8 Size: 1629 43 Fragments arranged by size: 1629 1425 924 889 436 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3190 1537 Size: 275 1378 4090 Fragments arranged by size: 4090 1378 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2761 3673 1353 Size: 1408 912 3423 Fragments arranged by size: 3423 1408 912 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2063 4330 4704 4850 387 Size: 1064 138 474 2267 374 146 1280 Fragments arranged by size: 2267 1280 1064 474 374 146 138 EcoICRI GAG'CTC Cuts at: 2237 2300 2237 Size: 63 5680 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2108 2205 2301 2392 2684 2695 2723 Size: 393 476 97 96 91 292 11 28 Cuts at: 2723 2798 3806 4403 5190 5458 1239 Size: 75 1008 597 787 268 1524 Fragments arranged by size: 1524 1008 787 597 476 393 292 268 97 96 91 75 28 11 EcoO109I rG'GnC_Cy Cuts at: 2953 2968 2953 Size: 15 5728 EcoRI G'AATT_C Cuts at: 3052 3430 3052 Size: 378 5365 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2656 2656 Size: 5743 FspI TGC'GCA Cuts at: 4249 4249 Size: 5743 HaeII r_GCGC'y Cuts at: 1678 4890 1678 Size: 3212 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4384 4416 4458 4490 1373 Size: 32 135 32 2812 32 42 32 2626 Fragments arranged by size: 2812 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2431 3087 3333 669 Size: 988 281 493 656 246 3079 Fragments arranged by size: 3079 988 656 493 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5743 HpaI GTT'AAC Cuts at: 3333 3333 Size: 5743 KpnI G_GTAC'C Cuts at: 3068 3068 Size: 5743 MfeI C'AATT_G Cuts at: 3342 3342 Size: 5743 MluI A'CGCG_T Cuts at: 5619 5619 Size: 5743 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2742 2902 4857 5041 1305 Size: 1437 160 1955 184 2007 Fragments arranged by size: 2007 1955 1437 184 160 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3921 Fragments arranged by size: 3921 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3701 4060 4219 518 Size: 648 2535 359 159 2042 Fragments arranged by size: 2535 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2965 3159 3836 4984 5229 1606 Size: 1359 194 677 1148 245 2120 Fragments arranged by size: 2120 1359 1148 677 245 194 NcoI C'CATG_G Cuts at: 513 1065 2004 2316 2488 513 Size: 552 939 312 172 3768 Fragments arranged by size: 3768 939 552 312 172 NdeI CA'TA_TG Cuts at: 387 2788 387 Size: 2401 3342 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5743 NotI GC'GGCC_GC Cuts at: 3190 3190 Size: 5743 NspI r_CATG'y Cuts at: 1132 1229 3101 4646 1132 Size: 97 1872 1545 2229 Fragments arranged by size: 2229 1872 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5743 PciI A'CATG_T Cuts at: 4642 4642 Size: 5743 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5743 PfoI T'CCnGG_A Cuts at: 2230 2230 Size: 5743 PmeI GTTT'AAAC Cuts at: 3047 3047 Size: 5743 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3812 3844 5325 5357 3812 Size: 32 1481 32 4198 Fragments arranged by size: 4198 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2968 2968 Size: 5743 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5743 PsiI TTA'TAA Cuts at: 3313 3313 Size: 5743 PspOMI G'GGCC_C Cuts at: 2576 2576 Size: 5743 PstI C_TGCA'G Cuts at: 830 3095 830 Size: 2265 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5743 SacI G_AGCT'C Cuts at: 2239 2302 2239 Size: 63 5680 SalI G'TCGA_C Cuts at: 1936 3085 1936 Size: 1149 4594 SanDI GG'GwC_CC Cuts at: 2968 2968 Size: 5743 SbfI CC_TGCA'GG Cuts at: 3095 3095 Size: 5743 ScaI AGT'ACT Cuts at: 3991 5703 3991 Size: 1712 4031 SfcI C'TryA_G Cuts at: 826 1045 3091 4226 4907 5098 826 Size: 219 2046 1135 681 191 1471 Fragments arranged by size: 2046 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5743 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5743 SmaI CCC'GGG Cuts at: 1872 3070 1872 Size: 1198 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3847 4748 5010 820 Size: 197 926 1904 901 262 1553 Fragments arranged by size: 1904 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3534 493 Size: 3041 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5743 SphI G_CATG'C Cuts at: 1132 3101 1132 Size: 1969 3774 SspI AAT'ATT Cuts at: 5 52 3667 5 Size: 47 3615 2081 Fragments arranged by size: 3615 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5743 StyI C'CwwG_G Cuts at: 513 1065 2004 2316 2488 2560 3031 3039 3182 Size: 552 939 312 172 72 471 8 143 Cuts at: 3182 513 Size: 3074 Fragments arranged by size: 3074 939 552 471 312 172 143 72 8 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3770 3787 3940 4125 4570 325 Size: 1255 2190 17 153 185 445 1498 Fragments arranged by size: 2190 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3989 5701 96 Size: 274 80 33 51 1443 2012 1712 138 Fragments arranged by size: 2012 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5703 5735 5703 Size: 32 5711 Tth111I GACn'n_nGTC Cuts at: 1316 2876 1316 Size: 1560 4183 XbaI T'CTAG_A Cuts at: 3079 3079 Size: 5743 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5743 XmaI C'CCGG_G Cuts at: 1870 3068 1870 Size: 1198 4545 XmnI GAAnn'nnTTC Cuts at: 3872 3872 Size: 5743 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3551 276 Size: 53 83 186 936 2017 2468 Fragments arranged by size: 2468 2017 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI SacI SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspXI PsrI PvuII RsrII SacII SapI SexAI SfiI SfoI SrfI SwaI XcmI