hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20080305/iprscan-20080305-16382946/chunk_1/iprscan-20080305-16382946.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB5244 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00353 71.4 1.1e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00353 1/1 107 159 .. 1 61 [] 71.4 1.1e-16 Alignments of top-scoring domains: SM00353: domain 1 of 1, from 107 to 159: score 71.4, E = 1.1e-16 *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA narER +R++ +N a+d Lr++vP+ + +KlsK+++LrlA pF1KB5244 107 NARER--NRMHGLNA-ALDNLRKVVPCYS----KTQKLSKIETLRLA 146 ieYIrksLqeqlqe<-* +YI + L e l++ pF1KB5244 147 KNYI-WALSEILRS 159 //