Result of FASTA (ccds) for
pFN21AB5242
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5242, 522 aa
1>>>pF1KB5242 522 - 522 aa - 522 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9349+/-0.000634; mu= 12.5191+/- 0.039
mean_var=116.1189+/-23.033, 0's: 0 Z-trim(115.6): 10 B-trim: 0 in 0/51
Lambda= 0.119021
statistics sampled from 16199 (16209) to 16199 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.498), width: 16
Scan time: 4.050
The best scores are: opt bits E(32554)
CCDS59088.1 FASTK gene_id:10922|Hs108|chr7 ( 522) 3612 630.5 1.4e-180
CCDS5919.1 FASTK gene_id:10922|Hs108|chr7 ( 408) 2193 386.8 2.5e-107
CCDS5918.1 FASTK gene_id:10922|Hs108|chr7 ( 549) 2193 386.9 3.2e-107
>>CCDS59088.1 FASTK gene_id:10922|Hs108|chr7 (522 aa)
initn: 3612 init1: 3612 opt: 3612 Z-score: 3355.5 bits: 630.5 E(32554): 1.4e-180
Smith-Waterman score: 3612; 100.0% identity (100.0% similar) in 522 aa overlap (1-522:1-522)
10 20 30 40 50 60
pF1KB5 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 EQERRLRLPPKPPPPLQPLLREARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EQERRLRLPPKPPPPLQPLLREARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCLERILAREAGVAPLATVNILMSLCQLRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCLERILAREAGVAPLATVNILMSLCQLRC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGYCTDFLLCASSSGAVLPVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGYCTDFLLCASSSGAVLPVRT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 QDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGL
430 440 450 460 470 480
490 500 510 520
pF1KB5 MGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG
::::::::::::::::::::::::::::::::::::::::::
CCDS59 MGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG
490 500 510 520
>>CCDS5919.1 FASTK gene_id:10922|Hs108|chr7 (408 aa)
initn: 2413 init1: 2183 opt: 2193 Z-score: 2040.2 bits: 386.8 E(32554): 2.5e-107
Smith-Waterman score: 2353; 92.9% identity (92.9% similar) in 380 aa overlap (170-522:29-408)
140 150 160 170 180 190
pF1KB5 QDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCALEQERRLRLPPKPPPPLQPL
::::::::::::::::::::::::::::::
CCDS59 MRRPRGEPGPRAPRPTEGATCAGPGESCFPSDGPLVCALEQERRLRLPPKPPPPLQPL
10 20 30 40 50
200 210 220 230
pF1KB5 LR---------------------------EARPEELTPHVMVLLAQHLARHRLREPQLLE
:: :::::::::::::::::::::::::::::::
CCDS59 LRGGQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVMVLLAQHLARHRLREPQLLE
60 70 80 90 100 110
240 250 260 270 280 290
pF1KB5 AIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCLERILAREAGVAPLATVNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCLERILAREAGVAPLATVNIL
120 130 140 150 160 170
300 310 320 330 340 350
pF1KB5 MSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPR
180 190 200 210 220 230
360 370 380 390 400 410
pF1KB5 RQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGYCTDFLLCASSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGYCTDFLLCASSS
240 250 260 270 280 290
420 430 440 450 460 470
pF1KB5 GAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRA
300 310 320 330 340 350
480 490 500 510 520
pF1KB5 LRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG
360 370 380 390 400
>>CCDS5918.1 FASTK gene_id:10922|Hs108|chr7 (549 aa)
initn: 2183 init1: 2183 opt: 2193 Z-score: 2038.3 bits: 386.9 E(32554): 3.2e-107
Smith-Waterman score: 3548; 95.1% identity (95.1% similar) in 549 aa overlap (1-522:1-549)
10 20 30 40 50 60
pF1KB5 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
130 140 150 160 170 180
190 200 210
pF1KB5 EQERRLRLPPKPPPPLQPLLR---------------------------EARPEELTPHVM
::::::::::::::::::::: ::::::::::::
CCDS59 EQERRLRLPPKPPPPLQPLLRGGQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVM
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 VLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 ERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSL
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 LDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQ
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 DLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLV
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB5 LRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQAL
490 500 510 520 530 540
520
pF1KB5 GLRWGPEGG
:::::::::
CCDS59 GLRWGPEGG
522 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:25:20 2016 done: Thu Nov 3 16:25:20 2016
Total Scan time: 4.050 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]