Result of FASTA (omim) for
pFN21AB5104
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5104, 548 aa
1>>>pF1KB5104 548 - 548 aa - 548 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9603+/-0.000442; mu= 16.1923+/- 0.028
mean_var=92.5315+/-19.149, 0's: 0 Z-trim(111.0): 22 B-trim: 722 in 1/57
Lambda= 0.133330
statistics sampled from 19505 (19511) to 19505 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.229), width: 16
Scan time: 9.300
The best scores are: opt bits E(85289)
NP_005307 (OMIM: 189972) general transcription fac ( 548) 3556 694.8 1.8e-199
XP_006718271 (OMIM: 189972) PREDICTED: general tra ( 548) 3556 694.8 1.8e-199
NP_001135779 (OMIM: 189972) general transcription ( 548) 3556 694.8 1.8e-199
>>NP_005307 (OMIM: 189972) general transcription factor (548 aa)
initn: 3556 init1: 3556 opt: 3556 Z-score: 3702.3 bits: 694.8 E(85289): 1.8e-199
Smith-Waterman score: 3556; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)
10 20 30 40 50 60
pF1KB5 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
490 500 510 520 530 540
pF1KB5 SRRLMKKT
::::::::
NP_005 SRRLMKKT
>>XP_006718271 (OMIM: 189972) PREDICTED: general transcr (548 aa)
initn: 3556 init1: 3556 opt: 3556 Z-score: 3702.3 bits: 694.8 E(85289): 1.8e-199
Smith-Waterman score: 3556; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)
10 20 30 40 50 60
pF1KB5 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
490 500 510 520 530 540
pF1KB5 SRRLMKKT
::::::::
XP_006 SRRLMKKT
>>NP_001135779 (OMIM: 189972) general transcription fact (548 aa)
initn: 3556 init1: 3556 opt: 3556 Z-score: 3702.3 bits: 694.8 E(85289): 1.8e-199
Smith-Waterman score: 3556; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)
10 20 30 40 50 60
pF1KB5 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSSSTSNHKQDVGISAAFLADVRPQTDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAIIKRFNHHSAMVLAAGLRKQEAQNEQTSEPSNMDGNSGDADCFQPAVKRAKLQESIEY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDLGKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQ
490 500 510 520 530 540
pF1KB5 SRRLMKKT
::::::::
NP_001 SRRLMKKT
548 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:02:54 2016 done: Thu Nov 3 16:02:56 2016
Total Scan time: 9.300 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]