Result of FASTA (omim) for
pFN21AB4371
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4371, 158 aa
1>>>pF1KB4371 158 - 158 aa - 158 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0110+/-0.000265; mu= 14.2662+/- 0.017
mean_var=69.7829+/-14.112, 0's: 0 Z-trim(120.3): 10 B-trim: 1547 in 1/51
Lambda= 0.153532
statistics sampled from 35467 (35477) to 35467 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.416), width: 16
Scan time: 5.790
The best scores are: opt bits E(85289)
XP_005250509 (OMIM: 604150) PREDICTED: DNA-directe ( 159) 1042 238.7 2.9e-63
XP_016867842 (OMIM: 604150) PREDICTED: DNA-directe ( 116) 683 159.1 2e-39
NP_116581 (OMIM: 609881) DNA-directed RNA polymera ( 115) 671 156.4 1.2e-38
NP_006225 (OMIM: 604150) DNA-directed RNA polymera ( 117) 671 156.5 1.3e-38
NP_057056 (OMIM: 613715,613717) DNA-directed RNA p ( 133) 182 48.2 5.6e-06
XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA- ( 133) 182 48.2 5.6e-06
>>XP_005250509 (OMIM: 604150) PREDICTED: DNA-directed RN (159 aa)
initn: 946 init1: 946 opt: 1042 Z-score: 1256.7 bits: 238.7 E(85289): 2.9e-63
Smith-Waterman score: 1042; 98.1% identity (98.1% similar) in 159 aa overlap (1-158:1-159)
10 20 30 40 50
pF1KB4 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_005 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWT
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_005 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVRAGPGGADGVGWT
70 80 90 100 110 120
120 130 140 150
pF1KB4 LARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
:::::::::::::::::: ::::::::::::::::::::
XP_005 LARVPRPGTALACFFGGPGGEAAVMEEQGLPPQAPGHVD
130 140 150
>>XP_016867842 (OMIM: 604150) PREDICTED: DNA-directed RN (116 aa)
initn: 683 init1: 683 opt: 683 Z-score: 828.9 bits: 159.1 E(85289): 2e-39
Smith-Waterman score: 683; 99.1% identity (99.1% similar) in 106 aa overlap (1-106:1-106)
10 20 30 40 50 60
pF1KB4 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWTL
:::::::::::::::::::::::::::::::::: :::::::::::
XP_016 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
70 80 90 100 110
130 140 150
pF1KB4 ARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
>>NP_116581 (OMIM: 609881) DNA-directed RNA polymerase I (115 aa)
initn: 671 init1: 671 opt: 671 Z-score: 814.5 bits: 156.4 E(85289): 1.2e-38
Smith-Waterman score: 671; 98.1% identity (99.0% similar) in 105 aa overlap (1-105:1-105)
10 20 30 40 50 60
pF1KB4 MNAPPAFESFLLFEGEKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_116 MNAPPAFESFLLFEGEKITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWTL
:::::::::::::::::::::::::::::::::: ::::::::::
NP_116 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP
70 80 90 100 110
130 140 150
pF1KB4 ARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
>>NP_006225 (OMIM: 604150) DNA-directed RNA polymerase I (117 aa)
initn: 575 init1: 575 opt: 671 Z-score: 814.4 bits: 156.5 E(85289): 1.3e-38
Smith-Waterman score: 671; 98.1% identity (98.1% similar) in 107 aa overlap (1-106:1-107)
10 20 30 40 50
pF1KB4 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_006 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGPGGADGVGWT
::::::::::::::::::::::::::::::::::: :::::::::::
NP_006 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
70 80 90 100 110
120 130 140 150
pF1KB4 LARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
>>NP_057056 (OMIM: 613715,613717) DNA-directed RNA polym (133 aa)
initn: 182 init1: 164 opt: 182 Z-score: 228.3 bits: 48.2 E(85289): 5.6e-06
Smith-Waterman score: 182; 32.6% identity (65.3% similar) in 95 aa overlap (14-104:20-114)
10 20 30 40 50
pF1KB4 MNAPPAFESFLLFEGEKITINKDTKVPNA---CL-FTINKEDHTLGNIIKSQLL
:::. : . ... .. :. :....::::::: .. ...
NP_057 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGP
:.:.: : :: . :: : :: .:.:: : : ....:. . . ..:
NP_057 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
70 80 90 100 110 120
120 130 140 150
pF1KB4 GGADGVGWTLARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
NP_057 YKDQKASRNESTF
130
>>XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA-dire (133 aa)
initn: 182 init1: 164 opt: 182 Z-score: 228.3 bits: 48.2 E(85289): 5.6e-06
Smith-Waterman score: 182; 32.6% identity (65.3% similar) in 95 aa overlap (14-104:20-114)
10 20 30 40 50
pF1KB4 MNAPPAFESFLLFEGEKITINKDTKVPNA---CL-FTINKEDHTLGNIIKSQLL
:::. : . ... .. :. :....::::::: .. ...
XP_005 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFRVRAGP
:.:.: : :: . :: : :: .:.:: : : ....:. . . ..:
XP_005 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
70 80 90 100 110 120
120 130 140 150
pF1KB4 GGADGVGWTLARVPRPGTALACFFGGPQGEAAVMEEQGLPPQAPGHVD
XP_005 YKDQKASRNESTF
130
158 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:51:52 2016 done: Thu Nov 3 14:51:53 2016
Total Scan time: 5.790 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]