FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4188, 357 aa
  1>>>pF1KB4188 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6934+/-0.000884; mu= 14.1067+/- 0.053
 mean_var=64.1557+/-12.838, 0's: 0 Z-trim(105.0): 19  B-trim: 0 in 0/49
 Lambda= 0.160124
 statistics sampled from 8167 (8179) to 8167 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.251), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS55818.1 TWF1 gene_id:5756|Hs108|chr12          ( 357) 2358 553.5 9.8e-158
CCDS31780.2 TWF1 gene_id:5756|Hs108|chr12          ( 350) 2282 536.0 1.9e-152
CCDS2849.1 TWF2 gene_id:11344|Hs108|chr3           ( 349) 1591 376.3 2.1e-104


>>CCDS55818.1 TWF1 gene_id:5756|Hs108|chr12               (357 aa)
 initn: 2358 init1: 2358 opt: 2358  Z-score: 2945.3  bits: 553.5 E(32554): 9.8e-158
Smith-Waterman score: 2358; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KB4 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KB4 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
              310       320       330       340       350       

>>CCDS31780.2 TWF1 gene_id:5756|Hs108|chr12               (350 aa)
 initn: 1237 init1: 1237 opt: 2282  Z-score: 2850.6  bits: 536.0 E(32554): 1.9e-152
Smith-Waterman score: 2282; 98.0% identity (98.0% similar) in 357 aa overlap (1-357:1-350)

               10        20        30        40        50        60
pF1KB4 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
       :::::::::::::::::::::::::::::::::::::::::       ::::::::::::
CCDS31 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINE-------VQTDVGVDTKHQ
              130       140       150       160              170   

              190       200       210       220       230       240
pF1KB4 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
           180       190       200       210       220       230   

              250       260       270       280       290       300
pF1KB4 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
           240       250       260       270       280       290   

              310       320       330       340       350       
pF1KB4 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
           300       310       320       330       340       350

>>CCDS2849.1 TWF2 gene_id:11344|Hs108|chr3                (349 aa)
 initn: 1574 init1: 812 opt: 1591  Z-score: 1987.9  bits: 376.3 E(32554): 2.1e-104
Smith-Waterman score: 1591; 64.1% identity (89.2% similar) in 351 aa overlap (1-351:1-344)

               10        20        30        40        50        60
pF1KB4 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
       :.:::::.:.:..::.::.:: :. ::.:. ::.::::.:. ..:   ::.:::  ::::
CCDS28 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
       :. .::::.:.:::::::::.::.:.:::::.: :: ::::::::::.::::::::::::
CCDS28 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
       .:::::.:.:. ::.:.: : ..:::::.::.::.::.:::       :.:...:..:::
CCDS28 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINE-------VKTEISVESKHQ
              130       140       150       160              170   

              190       200       210       220       230       240
pF1KB4 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
       ::::.:::.. :: .::..:.....::.:...:.. : : :..:  :.. .::.:.:.:.
CCDS28 TLQGLAFPLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDA
           180       190       200       210       220       230   

              250       260       270       280       290       300
pF1KB4 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
       ::::::::::.:::: :::.::::::::: :::.:::::::::::::. ::....... .
CCDS28 ARYHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAK
           240       250       260       270       280       290   

              310       320       330       340       350       
pF1KB4 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
       :::: .: ::::.:::.:::::::: ::.:::::::.:::: .::::::.:      
CCDS28 KIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS 
           300       310       320       330       340          




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:35:48 2016 done: Thu Nov  3 14:35:48 2016
 Total Scan time:  2.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]