(Circular) (Six-base) MAPSORT of: pFN21AB4020.seq Check: 8663 from: 1 to: 6697 pFN21AB4020 6697 bp With 182 enzymes: SgfI * October 20, 2009 10:42 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 3472 3472 Size: 6697 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4507 278 Size: 53 83 186 936 2971 2468 Fragments arranged by size: 2971 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2136 4040 1937 Size: 199 1904 4594 Fragments arranged by size: 4594 1904 199 Acc65I G'GTAC_C Cuts at: 4018 4018 Size: 6697 AclI AA'CG_TT Cuts at: 1563 4824 5197 1563 Size: 3261 373 3063 Fragments arranged by size: 3261 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2223 2426 2537 3491 4760 6144 6412 1632 Size: 591 203 111 954 1269 1384 268 1917 Fragments arranged by size: 1917 1384 1269 954 591 268 203 111 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6500 AflIII A'CryG_T Cuts at: 1203 5596 6573 1203 Size: 4393 977 1327 Fragments arranged by size: 4393 1327 977 AgeI A'CCGG_T Cuts at: 3447 5528 3447 Size: 2081 4616 AhdI GACnn_n'nnGTC Cuts at: 5426 5426 Size: 6697 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6697 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 3650 1184 Size: 2466 4231 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2604 2636 2604 Size: 32 6665 AlwNI CAG_nnn'CTG Cuts at: 2746 3070 3509 3647 4440 6012 2746 Size: 324 439 138 793 1572 3431 Fragments arranged by size: 3431 1572 793 439 324 138 ApaI G_GGCC'C Cuts at: 2755 2755 Size: 6697 ApaLI G'TGCA_C Cuts at: 4754 5910 4754 Size: 1156 5541 ApoI r'AATT_y Cuts at: 1493 4006 4232 4384 6493 1493 Size: 2513 226 152 2109 1697 Fragments arranged by size: 2513 2109 1697 226 152 AscI GG'CGCG_CC Cuts at: 2026 2026 Size: 6697 AseI AT'TA_AT Cuts at: 160 1032 5251 160 Size: 872 4219 1606 Fragments arranged by size: 4219 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6697 AvaI C'yCGr_G Cuts at: 1870 1943 2258 3721 4022 1870 Size: 73 315 1463 301 4545 Fragments arranged by size: 4545 1463 315 301 73 AvrII C'CTAG_G Cuts at: 2530 2530 Size: 6697 BamHI G'GATC_C Cuts at: 4027 4394 4027 Size: 367 6330 BanI G'GyrC_C Cuts at: 618 943 1160 1787 4018 5473 618 Size: 325 217 627 2231 1455 1842 Fragments arranged by size: 2231 1842 1455 627 325 217 BanII G_rGCy'C Cuts at: 1391 2118 2259 2755 3820 3977 4016 1391 Size: 727 141 496 1065 157 39 4072 Fragments arranged by size: 4072 1065 727 496 157 141 39 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2804 928 Size: 971 905 4821 Fragments arranged by size: 4821 971 905 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2881 2915 4888 4922 1903 Size: 34 944 34 1973 34 3678 Fragments arranged by size: 3678 1973 944 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4589 5799 4589 Size: 1210 5487 BclI T'GATC_A Cuts at: 1548 1548 Size: 6697 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2249 2954 3794 Size: 107 122 71 631 605 577 705 840 Cuts at: 3794 5308 136 Size: 1514 1525 Fragments arranged by size: 1525 1514 840 705 631 605 577 122 107 71 BglII A'GATC_T Cuts at: 6692 6692 Size: 6697 BlpI GC'TnA_GC Cuts at: 2321 2921 4114 2321 Size: 600 1193 4904 Fragments arranged by size: 4904 1193 600 Bme1580I G_kGCm'C Cuts at: 1790 2755 4758 5914 1790 Size: 965 2003 1156 2573 Fragments arranged by size: 2573 2003 1156 965 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 6697 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3615 4428 5386 Size: 416 53 83 399 24 2198 813 958 Cuts at: 5386 442 Size: 1753 Fragments arranged by size: 2198 1753 958 813 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6697 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2472 2472 Size: 6697 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2336 2435 2498 2813 2915 2993 3287 3841 Size: 1097 99 63 315 102 78 294 554 Cuts at: 3841 3940 5357 1239 Size: 99 1417 2579 Fragments arranged by size: 2579 1417 1097 554 315 294 102 99 99 78 63 Bpu10I CC'TnA_GC Cuts at: 2394 3811 2394 Size: 1417 5280 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2540 4822 5687 5985 2540 Size: 2282 865 298 3252 Fragments arranged by size: 3252 2282 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2003 2648 2666 2961 5360 882 Size: 617 504 645 18 295 2399 2219 Fragments arranged by size: 2399 2219 645 617 504 295 18 BsaAI yAC'GTr Cuts at: 493 1204 4488 493 Size: 711 3284 2702 Fragments arranged by size: 3284 2702 711 BsaBI GATnn'nnATC Cuts at: 6691 6691 Size: 6697 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 4504 4886 5521 275 Size: 53 83 186 936 2971 382 635 1451 Fragments arranged by size: 2971 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3447 5130 5528 5802 5949 6360 3447 Size: 1683 398 274 147 411 3784 Fragments arranged by size: 3784 1683 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2000 2030 3338 3368 3689 Size: 30 165 30 597 30 1308 30 321 Cuts at: 3689 3719 3807 3837 1178 Size: 30 88 30 4038 Fragments arranged by size: 4038 1308 597 321 165 88 30 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2351 2657 2888 3167 3170 3347 3359 3829 Size: 1165 306 231 279 3 177 12 470 Cuts at: 3829 1186 Size: 4054 Fragments arranged by size: 4054 1165 470 306 279 231 177 12 3 BseYI C'CCAG_C Cuts at: 2019 2754 2916 3176 3476 3509 5900 6396 2019 Size: 735 162 260 300 33 2391 496 2320 Fragments arranged by size: 2391 2320 735 496 300 260 162 33 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 6124 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2146 4147 4908 5936 1540 Size: 275 186 145 2001 761 1028 2301 Fragments arranged by size: 2301 2001 1028 761 275 186 145 BsiHKAI G_wGCw'C Cuts at: 2118 2259 2453 4758 4843 5914 2118 Size: 141 194 2305 85 1071 2901 Fragments arranged by size: 2901 2305 1071 194 141 85 BsiWI C'GTAC_G Cuts at: 3584 3584 Size: 6697 BsmI GAATG_Cn' Cuts at: 4208 4301 4208 Size: 93 6604 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2118 2259 2453 2755 3820 3977 4016 Size: 399 328 141 194 302 1065 157 39 Cuts at: 4016 4758 4843 5914 1391 Size: 742 85 1071 2174 Fragments arranged by size: 2174 1071 1065 742 399 328 302 194 157 141 85 39 BspEI T'CCGG_A Cuts at: 6360 6360 Size: 6697 BspHI T'CATG_A Cuts at: 2668 4586 6316 2668 Size: 1918 1730 3049 Fragments arranged by size: 3049 1918 1730 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2115 3472 3693 3753 3782 4052 844 Size: 1271 1357 221 60 29 270 3489 Fragments arranged by size: 3489 1357 1271 270 221 60 29 BsrBI CCG'CTC Cuts at: 1394 1823 2995 3031 3936 4584 1394 Size: 429 1172 36 905 648 3507 Fragments arranged by size: 3507 1172 905 648 429 36 BsrDI GCAATG_nn' Cuts at: 65 1248 5192 5366 65 Size: 1183 3944 174 1396 Fragments arranged by size: 3944 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2721 3006 3447 5341 5528 1700 Size: 110 911 285 441 1894 187 2869 Fragments arranged by size: 2869 1894 911 441 285 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6697 BssHII G'CGCG_C Cuts at: 1925 2026 2299 2357 1925 Size: 101 273 58 6265 Fragments arranged by size: 6265 273 101 58 BssSI C'ACGA_G Cuts at: 2870 4757 5769 2870 Size: 1887 1012 3798 Fragments arranged by size: 3798 1887 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 2497 2746 794 Size: 1703 249 4745 Fragments arranged by size: 4745 1703 249 BstBI TT'CG_AA Cuts at: 5501 5501 Size: 6697 BstEII G'GTnAC_C Cuts at: 1184 2378 3928 1184 Size: 1194 1550 3953 Fragments arranged by size: 3953 1550 1194 BstYI r'GATC_y Cuts at: 1972 3120 4027 4394 4779 4796 6248 6334 6346 Size: 1148 907 367 385 17 1452 86 12 Cuts at: 6346 6692 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 1148 907 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 3199 3327 3393 3700 513 Size: 552 939 1195 128 66 307 3510 Fragments arranged by size: 3510 1195 939 552 307 128 66 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5958 Fragments arranged by size: 5958 683 56 BtsI GCAGTG_nn' Cuts at: 2451 3709 3892 3904 4213 5007 5027 2451 Size: 1258 183 12 309 794 20 4121 Fragments arranged by size: 4121 1258 794 309 183 20 12 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6697 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6662 DraI TTT'AAA Cuts at: 4001 4001 Size: 6697 DraIII CAC_nnn'GTG Cuts at: 3236 3236 Size: 6697 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 3926 5704 809 Size: 507 2610 1778 1802 Fragments arranged by size: 2610 1802 1778 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2511 3039 3202 Size: 54 1425 50 275 18 681 528 163 Cuts at: 3202 3324 3618 4144 5033 6662 8 Size: 122 294 526 889 1629 43 Fragments arranged by size: 1629 1425 889 681 528 526 294 275 163 122 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 4144 1537 Size: 275 2332 4090 Fragments arranged by size: 4090 2332 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2199 3853 4627 1353 Size: 846 1654 774 3423 Fragments arranged by size: 3423 1654 846 774 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2744 3035 3843 5284 5658 5804 Size: 1064 138 1155 291 808 1441 374 146 Cuts at: 5804 387 Size: 1280 Fragments arranged by size: 1441 1280 1155 1064 808 374 291 146 138 EcoICRI GAG'CTC Cuts at: 2116 2257 2116 Size: 141 6556 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2223 2336 2426 2435 2498 2537 2813 Size: 393 591 113 90 9 63 39 276 Cuts at: 2813 2915 2993 3287 3491 3841 3940 4760 5357 Size: 102 78 294 204 350 99 820 597 Cuts at: 5357 6144 6412 1239 Size: 787 268 1524 Fragments arranged by size: 1524 820 787 597 591 393 350 294 276 268 204 113 102 99 90 78 63 39 9 EcoNI CCTnn'n_nnAGG Cuts at: 2534 2534 Size: 6697 EcoO109I rG'GnC_Cy Cuts at: 2104 2410 3727 3771 2104 Size: 306 1317 44 5030 Fragments arranged by size: 5030 1317 306 44 EcoRI G'AATT_C Cuts at: 4006 4384 4006 Size: 378 6319 FspI TGC'GCA Cuts at: 3368 3626 5203 3368 Size: 258 1577 4862 Fragments arranged by size: 4862 1577 258 HaeII r_GCGC'y Cuts at: 1678 2665 3418 5844 1678 Size: 987 753 2426 2531 Fragments arranged by size: 2531 2426 987 753 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2000 2032 2377 2409 2894 Size: 32 135 32 428 32 345 32 485 Cuts at: 2894 2926 3374 3406 3782 3814 5338 5370 5412 Size: 32 448 32 376 32 1524 32 42 Cuts at: 5412 5444 1373 Size: 32 2626 Fragments arranged by size: 2626 1524 485 448 428 376 345 135 42 32 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 4041 4287 669 Size: 988 281 2103 246 3079 Fragments arranged by size: 3079 2103 988 281 246 HindIII A'AGCT_T Cuts at: 748 2516 2960 748 Size: 1768 444 4485 Fragments arranged by size: 4485 1768 444 HpaI GTT'AAC Cuts at: 4287 4287 Size: 6697 KpnI G_GTAC'C Cuts at: 4022 4022 Size: 6697 MfeI C'AATT_G Cuts at: 3400 4296 3400 Size: 896 5801 MluI A'CGCG_T Cuts at: 6573 6573 Size: 6697 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 5811 5995 1305 Size: 4506 184 2007 Fragments arranged by size: 4506 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2513 3620 10 Size: 54 1425 343 681 1107 3087 Fragments arranged by size: 3087 1425 1107 681 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 4655 5014 5173 518 Size: 648 3489 359 159 2042 Fragments arranged by size: 3489 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2023 2040 2065 2314 2941 3070 3734 3807 Size: 417 17 25 249 627 129 664 73 Cuts at: 3807 4113 4790 5938 6183 1606 Size: 306 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 664 627 417 306 249 245 129 73 25 17 NaeI GCC'GGC Cuts at: 2723 3008 2723 Size: 285 6412 NcoI C'CATG_G Cuts at: 513 1065 2004 3393 513 Size: 552 939 1389 3817 Fragments arranged by size: 3817 1389 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 6697 NgoMIV G'CCGG_C Cuts at: 2721 3006 2721 Size: 285 6412 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6697 NotI GC'GGCC_GC Cuts at: 4144 4144 Size: 6697 NspI r_CATG'y Cuts at: 1132 1229 4055 5600 1132 Size: 97 2826 1545 2229 Fragments arranged by size: 2826 2229 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 6697 PciI A'CATG_T Cuts at: 5596 5596 Size: 6697 PflMI CCAn_nnn'nTGG Cuts at: 1108 3394 1108 Size: 2286 4411 PmeI GTTT'AAAC Cuts at: 4001 4001 Size: 6697 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4766 4798 6279 6311 4766 Size: 32 1481 32 5152 Fragments arranged by size: 5152 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2104 2410 3727 3771 2104 Size: 306 1317 44 5030 Fragments arranged by size: 5030 1317 306 44 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6697 PsiI TTA'TAA Cuts at: 4267 4267 Size: 6697 PspOMI G'GGCC_C Cuts at: 2751 2751 Size: 6697 PstI C_TGCA'G Cuts at: 830 2094 2112 2313 2598 2742 2883 3505 3716 Size: 1264 18 201 285 144 141 622 211 Cuts at: 3716 3989 4049 830 Size: 273 60 3478 Fragments arranged by size: 3478 1264 622 285 273 211 201 144 141 60 18 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6697 PvuII CAG'CTG Cuts at: 2314 2941 3070 2314 Size: 627 129 5941 Fragments arranged by size: 5941 627 129 SacI G_AGCT'C Cuts at: 2118 2259 2118 Size: 141 6556 SalI G'TCGA_C Cuts at: 1936 4039 1936 Size: 2103 4594 SanDI GG'GwC_CC Cuts at: 3727 3727 Size: 6697 SapI GCTCTTCn'nnn_ Cuts at: 3853 3853 Size: 6697 SbfI CC_TGCA'GG Cuts at: 2112 4049 2112 Size: 1937 4760 ScaI AGT'ACT Cuts at: 4945 6657 4945 Size: 1712 4985 SexAI A'CCwGG_T Cuts at: 2766 2853 3537 2766 Size: 87 684 5926 Fragments arranged by size: 5926 684 87 SfcI C'TryA_G Cuts at: 826 1045 2090 2108 2309 2594 2635 2738 2879 Size: 219 1045 18 201 285 41 103 141 Cuts at: 2879 3501 3712 3985 4045 5180 5861 6052 826 Size: 622 211 273 60 1135 681 191 1471 Fragments arranged by size: 1471 1135 1045 681 622 285 273 219 211 201 191 141 103 60 41 18 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6697 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6697 SmaI CCC'GGG Cuts at: 1872 4024 1872 Size: 2152 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2519 4801 5702 5964 820 Size: 197 926 576 2282 901 262 1553 Fragments arranged by size: 2282 1553 926 901 576 262 197 SnaBI TAC'GTA Cuts at: 493 4488 493 Size: 3995 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6697 SphI G_CATG'C Cuts at: 1132 4055 1132 Size: 2923 3774 SspI AAT'ATT Cuts at: 5 52 4621 5 Size: 47 4569 2081 Fragments arranged by size: 4569 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 6697 StyI C'CwwG_G Cuts at: 513 1065 2004 2292 2433 2530 2949 3393 4136 Size: 552 939 288 141 97 419 444 743 Cuts at: 4136 513 Size: 3074 Fragments arranged by size: 3074 939 743 552 444 419 288 141 97 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3533 4724 4741 4894 5079 5524 325 Size: 1255 1953 1191 17 153 185 445 1498 Fragments arranged by size: 1953 1498 1255 1191 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3738 4943 6655 Size: 274 80 33 51 1443 1761 1205 1712 Cuts at: 6655 96 Size: 138 Fragments arranged by size: 1761 1712 1443 1205 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2692 2724 3689 3721 3807 3839 6657 6689 2692 Size: 32 965 32 86 32 2818 32 2700 Fragments arranged by size: 2818 2700 965 86 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 2014 1316 Size: 698 5999 XbaI T'CTAG_A Cuts at: 4033 4033 Size: 6697 XcmI CCAnnnn_n'nnnnTGG Cuts at: 3233 3628 3233 Size: 395 6302 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6697 XmaI C'CCGG_G Cuts at: 1870 4022 1870 Size: 2152 4545 XmnI GAAnn'nnTTC Cuts at: 4826 4826 Size: 6697 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4505 276 Size: 53 83 186 936 2971 2468 Fragments arranged by size: 2971 2468 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AscI AseI AsiSI AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SacI SalI SanDI SapI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI BaeI BbeI BbvCI BfrBI BsmBI BstXI BstZ17I Bsu36I EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PspXI PsrI RsrII SacII SfiI SfoI SrfI SwaI