Result of FASTA (omim) for
pFN21AB3512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3512, 414 aa
1>>>pF1KB3512 414 - 414 aa - 414 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7900+/-0.000531; mu= 13.0162+/- 0.034
mean_var=265.8293+/-61.344, 0's: 0 Z-trim(116.1): 120 B-trim: 2902 in 2/49
Lambda= 0.078663
statistics sampled from 26905 (27068) to 26905 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.317), width: 16
Scan time: 7.040
The best scores are: opt bits E(85289)
XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 2826 334.5 3e-91
XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 2826 334.5 3e-91
XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 2826 334.5 3e-91
XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 2826 334.5 3e-91
XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 2826 334.5 3e-91
XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 2826 334.5 3e-91
NP_031401 (OMIM: 605078,612069) TAR DNA-binding pr ( 414) 2826 334.5 3e-91
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 417 60.9 5.3e-09
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 410 60.3 1e-08
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 408 60.0 1.1e-08
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 406 59.6 1.2e-08
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 404 59.5 1.5e-08
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 404 59.5 1.5e-08
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 402 59.2 1.7e-08
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 400 59.0 2.1e-08
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 400 59.0 2.1e-08
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 400 59.0 2.1e-08
NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363) 391 58.0 4.3e-08
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 388 57.6 4.9e-08
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 386 57.4 5.9e-08
NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 380 56.6 9.1e-08
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 341 52.3 2.1e-06
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 324 50.4 8.2e-06
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 321 50.1 1e-05
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 319 49.8 1.2e-05
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 317 49.6 1.4e-05
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 317 49.6 1.4e-05
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 317 49.6 1.4e-05
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 315 49.4 1.7e-05
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 315 49.4 1.7e-05
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 310 48.6 2.1e-05
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 304 47.9 3.4e-05
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 304 48.0 3.6e-05
XP_016881354 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 259 43.2 0.0016
XP_016881350 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 259 43.2 0.0016
XP_016881351 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 259 43.2 0.0016
NP_001020260 (OMIM: 612679) CUGBP Elav-like family ( 448) 259 43.2 0.0016
NP_005372 (OMIM: 164035) nucleolin [Homo sapiens] ( 710) 262 43.9 0.0016
XP_016881341 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 259 43.2 0.0016
XP_016881339 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 259 43.2 0.0016
XP_016881335 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 476) 259 43.2 0.0016
XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 494) 259 43.3 0.0016
XP_016881329 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 496) 259 43.3 0.0017
XP_016881352 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 258 43.1 0.0017
XP_016881353 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 258 43.1 0.0017
XP_016881349 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 258 43.1 0.0017
XP_016881346 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 454) 258 43.1 0.0017
XP_016881338 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 473) 258 43.1 0.0017
XP_016881340 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 258 43.1 0.0017
XP_016881337 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 258 43.1 0.0017
>>XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR DNA- (414 aa)
initn: 2826 init1: 2826 opt: 2826 Z-score: 1759.2 bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
370 380 390 400 410
>>XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR DNA- (414 aa)
initn: 2826 init1: 2826 opt: 2826 Z-score: 1759.2 bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
370 380 390 400 410
>>XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR DNA- (414 aa)
initn: 2826 init1: 2826 opt: 2826 Z-score: 1759.2 bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
370 380 390 400 410
>>XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR DNA- (414 aa)
initn: 2826 init1: 2826 opt: 2826 Z-score: 1759.2 bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
370 380 390 400 410
>>XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR DNA- (414 aa)
initn: 2826 init1: 2826 opt: 2826 Z-score: 1759.2 bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
370 380 390 400 410
>>XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR DNA- (414 aa)
initn: 2826 init1: 2826 opt: 2826 Z-score: 1759.2 bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
370 380 390 400 410
>>NP_031401 (OMIM: 605078,612069) TAR DNA-binding protei (414 aa)
initn: 2826 init1: 2826 opt: 2826 Z-score: 1759.2 bits: 334.5 E(85289): 3e-91
Smith-Waterman score: 2826; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB3 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 KEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 KQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ
310 320 330 340 350 360
370 380 390 400 410
pF1KB3 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
370 380 390 400 410
>>NP_112556 (OMIM: 602688) heterogeneous nuclear ribonuc (332 aa)
initn: 395 init1: 195 opt: 417 Z-score: 282.6 bits: 60.9 E(85289): 5.3e-09
Smith-Waterman score: 435; 30.4% identity (60.9% similar) in 312 aa overlap (78-374:47-329)
50 60 70 80 90 100
pF1KB3 SQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLI
: ..... : : .: : .. . : ..
NP_112 ENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK---MF
20 30 40 50 60 70
110 120 130 140 150 160
pF1KB3 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR-H
: :: : :...:::.::. ::::. .: : .::.:.::::. : . . ::..:. :
NP_112 VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEH
80 90 100 110 120 130
170 180 190 200 210 220
pF1KB3 MIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP-KP
.::: : : .. . .:. .:.::: . . ::...::.:...:.. . .: :
NP_112 RLDGRVIDPK--KAMAMKKDPV--KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDP
140 150 160 170 180
230 240 250 260 270
pF1KB3 ----FRAFAFVTFADDQIAQSLCGEDL-IIKGISVHISNAEPKHNSNRQLERSGRFG---
:.:.:.:: ... .... . . ..: . .:. :.::. ..: :: :
NP_112 KLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRN
190 200 210 220 230 240
280 290 300 310 320 330
pF1KB3 -GNPGGFGNQGGFGNSRGGGAGLGN--NQGSNM--GGGMNFGAFSINPAMMAAAQAALQS
:: :. :. :: :.:.. . : :: ::: .. : : ..:... .:
NP_112 RGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSP------------
250 260 270 280 290
340 350 360 370 380 390
pF1KB3 SWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAG
.:..:. :: : . .::. . .: :. .:.:
NP_112 -YGYYGY--------GP-GYDYSQGSTNYGKSQRRGGHQNNYKPY
300 310 320 330
400 410
pF1KB3 SGSGFNGGFGSSMDSKSSGWGM
>>NP_112740 (OMIM: 607137,609115) heterogeneous nuclear (420 aa)
initn: 293 init1: 183 opt: 410 Z-score: 277.3 bits: 60.3 E(85289): 1e-08
Smith-Waterman score: 431; 29.3% identity (59.6% similar) in 317 aa overlap (85-392:129-410)
60 70 80 90 100 110
pF1KB3 RLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWK
..: .: ..... : . ... :: :
NP_112 AAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWD
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB3 TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWC
:...:: ::.: ::::. .: : ::.:.::::: : . . ::. ..: .::.
NP_112 TSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLI
160 170 180 190 200 210
180 190 200 210 220
pF1KB3 DCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP-----KPFRA
: : .. .... : .::::: . : .:....:.:. .:.. .. .: . :.
NP_112 DPKRAKALKGKEPP---KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRG
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB3 FAFVTFADDQ-IAQSLCGEDLIIKGISVHISNAEPK--HNSNRQLERSGRFGGNPGGFGN
: :.:..:.. . . : .. : . . .:. :.:: . ...: ...:: :. :: :.
NP_112 FCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGR-GAAAGGRGG
280 290 300 310 320 330
290 300 310 320 330 340
pF1KB3 QGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQN
: :: : : . ::: : ...: .. :..: ..::
NP_112 TRG----RGRGQGQNWNQGFNNYYDQGYGNYN--------------SAYG------GDQN
340 350 360 370
350 360 370 380 390 400
pF1KB3 QSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSM
:: .: . . :. : ..:.: .:::..: .:.:: .:
NP_112 YSGYGGYDYTGYNY---GNYGYGQGYADYSGQQST----YGKASRGGGNHQNNYQPY
380 390 400 410 420
410
pF1KB3 DSKSSGWGM
>>NP_112738 (OMIM: 601324) heterogeneous nuclear ribonuc (355 aa)
initn: 328 init1: 205 opt: 408 Z-score: 276.8 bits: 60.0 E(85289): 1.1e-08
Smith-Waterman score: 409; 30.0% identity (61.7% similar) in 290 aa overlap (81-349:71-354)
60 70 80 90 100
pF1KB3 MRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSD---LI
.: . :: ..:. . ..:. . ..
NP_112 AGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMF
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB3 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR-H
. :: : ::..:::.::: ::::. .: : ::.:.::::: : : :. :::.:. :
NP_112 IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEH
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB3 MIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP---
..:. : : .. ... ::. .:.::: . : :...::.:. .:.: .. .:
NP_112 KLNGKVIDPKRAKAMKTK-EPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN
170 180 190 200 210
230 240 250 260 270
pF1KB3 --KPFRAFAFVTFADDQIAQSLCGEDLIIKGIS---VHISNAEPKHNSNRQLERSGRF--
. :.: :.:: ... .... . :.: .... .. ......: : :
NP_112 KTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAG
220 230 240 250 260 270
280 290 300 310 320
pF1KB3 -----GGNPGGFGNQGGFGNSRGGGAG-LG-NNQGSNMGGGMNFGAFSINPAMMAAAQAA
::.:. ::: ..: . : : : :.:: . ::... .. : . . .
NP_112 RARGRGGGPSQNWNQG-YSNYWNQGYGNYGYNSQGYGGYGGYDYTGY--NNYYGYGDYSN
280 290 300 310 320 330
330 340 350 360 370 380
pF1KB3 LQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSAS
::..: .. ...::. :
NP_112 QQSGYGKVSRRGGHQNSYKPY
340 350
414 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:28:18 2016 done: Thu Nov 3 13:28:19 2016
Total Scan time: 7.040 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]