(Circular) (Six-base) MAPSORT of: pFN21AB3348.seq Check: 3088 from: 1 to: 6814 pFN21AB3348 6814 bp With 182 enzymes: SgfI * February 27, 2009 14:32 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2983 2983 Size: 6814 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3423 4624 278 Size: 53 83 186 936 1887 1201 2468 Fragments arranged by size: 2468 1887 1201 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3285 4157 1937 Size: 1348 872 4594 Fragments arranged by size: 4594 1348 872 Acc65I G'GTAC_C Cuts at: 4135 4135 Size: 6814 AclI AA'CG_TT Cuts at: 1563 4941 5314 1563 Size: 3378 373 3063 Fragments arranged by size: 3378 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2057 2274 2450 4877 6261 6529 1632 Size: 425 217 176 2427 1384 268 1917 Fragments arranged by size: 2427 1917 1384 425 268 217 176 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6617 AflIII A'CryG_T Cuts at: 1203 5713 6690 1203 Size: 4510 977 1327 Fragments arranged by size: 4510 1327 977 AgeI A'CCGG_T Cuts at: 5645 5645 Size: 6814 AhdI GACnn_n'nnGTC Cuts at: 5543 5543 Size: 6814 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6814 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 4068 1184 Size: 2884 3930 AlwNI CAG_nnn'CTG Cuts at: 3172 3280 3542 3559 3586 3937 4021 4105 4557 Size: 108 262 17 27 351 84 84 452 Cuts at: 4557 6129 3172 Size: 1572 3857 Fragments arranged by size: 3857 1572 452 351 262 108 84 84 27 17 ApaI G_GGCC'C Cuts at: 2081 3865 2081 Size: 1784 5030 ApaLI G'TGCA_C Cuts at: 4871 6027 4871 Size: 1156 5658 ApoI r'AATT_y Cuts at: 1493 3410 3949 4123 4349 4501 6610 1493 Size: 1917 539 174 226 152 2109 1697 Fragments arranged by size: 2109 1917 1697 539 226 174 152 AseI AT'TA_AT Cuts at: 160 1032 2507 5368 160 Size: 872 1475 2861 1606 Fragments arranged by size: 2861 1606 1475 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6814 AvaI C'yCGr_G Cuts at: 1870 1943 3858 4139 1870 Size: 73 1915 281 4545 Fragments arranged by size: 4545 1915 281 73 BamHI G'GATC_C Cuts at: 2676 4144 4511 2676 Size: 1468 367 4979 Fragments arranged by size: 4979 1468 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 4135 5590 618 Size: 325 217 627 2348 1455 1842 Fragments arranged by size: 2348 1842 1455 627 325 217 BanII G_rGCy'C Cuts at: 1391 2081 2248 2337 2366 2377 2768 3216 3865 Size: 690 167 89 29 11 391 448 649 Cuts at: 3865 4133 1391 Size: 268 4072 Fragments arranged by size: 4072 690 649 448 391 268 167 89 29 11 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 5843 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 2622 2656 3011 3045 5005 Size: 34 50 34 601 34 355 34 1960 Cuts at: 5005 5039 1903 Size: 34 3678 Fragments arranged by size: 3678 1960 601 355 50 34 34 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2764 4706 5916 2764 Size: 1942 1210 3662 Fragments arranged by size: 3662 1942 1210 BclI T'GATC_A Cuts at: 1548 1548 Size: 6814 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2637 5425 136 Size: 107 122 71 631 605 965 2788 1525 Fragments arranged by size: 2788 1525 965 631 605 122 107 71 BglII A'GATC_T Cuts at: 6809 6809 Size: 6814 BlpI GC'TnA_GC Cuts at: 2336 2762 2861 3179 3305 4231 2336 Size: 426 99 318 126 926 4919 Fragments arranged by size: 4919 926 426 318 126 99 Bme1580I G_kGCm'C Cuts at: 1790 2081 3865 3913 4875 6031 1790 Size: 291 1784 48 962 1156 2573 Fragments arranged by size: 2573 1784 1156 962 291 48 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 6814 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 4545 5503 442 Size: 416 53 83 399 24 3128 958 1753 Fragments arranged by size: 3128 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6814 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2770 2770 Size: 6814 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2144 2391 2422 4013 4046 5474 1239 Size: 905 247 31 1591 33 1428 2579 Fragments arranged by size: 2579 1591 1428 905 247 33 31 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2085 3446 4939 5804 6102 2085 Size: 1361 1493 865 298 2797 Fragments arranged by size: 2797 1493 1361 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2017 3105 3867 5477 882 Size: 617 518 1088 762 1610 2219 Fragments arranged by size: 2219 1610 1088 762 617 518 BsaAI yAC'GTr Cuts at: 493 1204 2267 4605 493 Size: 711 1063 2338 2702 Fragments arranged by size: 2702 2338 1063 711 BsaBI GATnn'nnATC Cuts at: 2537 6808 2537 Size: 4271 2543 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3420 4621 5003 5638 Size: 53 83 186 936 1887 1201 382 635 Cuts at: 5638 275 Size: 1451 Fragments arranged by size: 1887 1451 1201 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3674 5247 5645 5919 6066 6477 3674 Size: 1573 398 274 147 411 4011 Fragments arranged by size: 4011 1573 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2187 2217 2868 2898 2915 Size: 30 165 30 784 30 651 30 17 Cuts at: 2915 2945 1178 Size: 30 5047 Fragments arranged by size: 5047 784 651 165 30 30 30 30 30 17 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2447 2649 2686 3062 1186 Size: 1261 202 37 376 4938 Fragments arranged by size: 4938 1261 376 202 37 BseYI C'CCAG_C Cuts at: 2140 2179 2275 4056 6017 6513 2140 Size: 39 96 1781 1961 496 2441 Fragments arranged by size: 2441 1961 1781 496 96 39 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2882 3137 3185 3293 3614 3941 1163 Size: 573 1146 255 48 108 321 327 4036 Fragments arranged by size: 4036 1146 573 327 321 255 108 48 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 4264 5025 6053 1540 Size: 275 186 2263 761 1028 2301 Fragments arranged by size: 2301 2263 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2272 2768 2817 3216 3462 3536 4029 4875 4960 Size: 496 49 399 246 74 493 846 85 Cuts at: 4960 6031 2272 Size: 1071 3055 Fragments arranged by size: 3055 1071 846 496 493 399 246 85 74 49 BsmI GAATG_Cn' Cuts at: 4325 4418 4325 Size: 93 6721 BsmBI CGTCTCn'nnnn_ Cuts at: 3427 3427 Size: 6814 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2081 2248 2272 2337 2366 2377 2768 Size: 399 291 167 24 65 29 11 391 Cuts at: 2768 2817 3216 3462 3536 3865 3913 4029 4133 Size: 49 399 246 74 329 48 116 104 Cuts at: 4133 4875 4960 6031 1391 Size: 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 399 391 329 291 246 167 116 104 85 74 65 49 48 29 24 11 BspEI T'CCGG_A Cuts at: 6477 6477 Size: 6814 BspHI T'CATG_A Cuts at: 4703 6433 4703 Size: 1730 5084 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2457 2983 3141 3636 4169 844 Size: 1613 526 158 495 533 3489 Fragments arranged by size: 3489 1613 533 526 495 158 BsrBI CCG'CTC Cuts at: 1394 1823 2209 4701 1394 Size: 429 386 2492 3507 Fragments arranged by size: 3507 2492 429 386 BsrDI GCAATG_nn' Cuts at: 65 1248 3316 3693 3852 5309 5483 65 Size: 1183 2068 377 159 1457 174 1396 Fragments arranged by size: 2068 1457 1396 1183 377 174 159 BsrFI r'CCGG_y Cuts at: 1700 1810 5458 5645 1700 Size: 110 3648 187 2869 Fragments arranged by size: 3648 2869 187 110 BsrGI T'GTAC_A Cuts at: 96 2931 96 Size: 2835 3979 BssHII G'CGCG_C Cuts at: 1925 4006 1925 Size: 2081 4733 BssSI C'ACGA_G Cuts at: 4874 5886 4874 Size: 1012 5802 BstAPI GCAn_nnn'nTGC Cuts at: 794 2998 3199 3937 794 Size: 2204 201 738 3671 Fragments arranged by size: 3671 2204 738 201 BstBI TT'CG_AA Cuts at: 5618 5618 Size: 6814 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6814 BstXI CCAn_nnnn'nTGG Cuts at: 2118 2118 Size: 6814 BstYI r'GATC_y Cuts at: 1972 2676 2964 4017 4144 4511 4896 4913 6365 Size: 704 288 1053 127 367 385 17 1452 Cuts at: 6365 6451 6463 6809 1972 Size: 86 12 346 1977 Fragments arranged by size: 1977 1452 1053 704 385 367 346 288 127 86 17 12 BstZ17I GTA'TAC Cuts at: 3286 3286 Size: 6814 BtgI C'CryG_G Cuts at: 513 1065 3878 3955 513 Size: 552 2813 77 3372 Fragments arranged by size: 3372 2813 552 77 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 6075 Fragments arranged by size: 6075 683 56 BtsI GCAGTG_nn' Cuts at: 2195 2982 3619 3929 4330 5124 5144 2195 Size: 787 637 310 401 794 20 3865 Fragments arranged by size: 3865 794 787 637 401 310 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6814 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6779 DraI TTT'AAA Cuts at: 2802 4118 2802 Size: 1316 5498 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 3881 5821 809 Size: 507 2565 1940 1802 Fragments arranged by size: 2565 1940 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2217 2979 3849 Size: 54 1425 50 275 18 387 762 870 Cuts at: 3849 4261 5150 6779 8 Size: 412 889 1629 43 Fragments arranged by size: 1629 1425 889 870 762 412 387 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 4261 1537 Size: 275 2449 4090 Fragments arranged by size: 4090 2449 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2603 3524 4744 1353 Size: 1250 921 1220 3423 Fragments arranged by size: 3423 1250 1220 921 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3121 5401 5775 5921 387 Size: 1064 138 1532 2280 374 146 1280 Fragments arranged by size: 2280 1532 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2766 3214 2766 Size: 448 6366 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2057 2144 2274 2391 2422 2450 4013 Size: 393 425 87 130 117 31 28 1563 Cuts at: 4013 4046 4877 5474 6261 6529 1239 Size: 33 831 597 787 268 1524 Fragments arranged by size: 1563 1524 831 787 597 425 393 268 130 117 87 33 31 28 EcoNI CCTnn'n_nnAGG Cuts at: 3896 3896 Size: 6814 EcoO109I rG'GnC_Cy Cuts at: 2077 2078 2130 2259 2713 3076 3512 3862 3883 Size: 1 52 129 454 363 436 350 21 Cuts at: 3883 3934 4075 2077 Size: 51 141 4816 Fragments arranged by size: 4816 454 436 363 350 141 129 52 51 21 1 EcoRI G'AATT_C Cuts at: 3949 4123 4501 3949 Size: 174 378 6262 Fragments arranged by size: 6262 378 174 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 3095 3095 Size: 6814 FspI TGC'GCA Cuts at: 5320 5320 Size: 6814 HaeII r_GCGC'y Cuts at: 1678 3506 5961 1678 Size: 1828 2455 2531 Fragments arranged by size: 2531 2455 1828 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2235 2267 2868 2900 4062 Size: 32 135 32 663 32 601 32 1162 Cuts at: 4062 4094 5455 5487 5529 5561 1373 Size: 32 1361 32 42 32 2626 Fragments arranged by size: 2626 1361 1162 663 601 135 42 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 4158 4404 669 Size: 988 281 2220 246 3079 Fragments arranged by size: 3079 2220 988 281 246 HindIII A'AGCT_T Cuts at: 748 4049 748 Size: 3301 3513 HpaI GTT'AAC Cuts at: 4404 4404 Size: 6814 KpnI G_GTAC'C Cuts at: 4139 4139 Size: 6814 MfeI C'AATT_G Cuts at: 4413 4413 Size: 6814 MluI A'CGCG_T Cuts at: 6690 6690 Size: 6814 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2992 5928 6112 1305 Size: 1687 2936 184 2007 Fragments arranged by size: 2936 2007 1687 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2219 2981 3851 10 Size: 54 1425 343 387 762 870 2973 Fragments arranged by size: 2973 1425 870 762 387 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2780 3759 4772 5131 5290 518 Size: 648 1614 979 1013 359 159 2042 Fragments arranged by size: 2042 1614 1013 979 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2340 2921 3097 3823 3880 4102 4230 4907 Size: 734 581 176 726 57 222 128 677 Cuts at: 4907 6055 6300 1606 Size: 1148 245 2120 Fragments arranged by size: 2120 1148 734 726 677 581 245 222 176 128 57 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 6262 NdeI CA'TA_TG Cuts at: 387 387 Size: 6814 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6814 NotI GC'GGCC_GC Cuts at: 4261 4261 Size: 6814 NspI r_CATG'y Cuts at: 1132 1229 2905 4172 5717 1132 Size: 97 1676 1267 1545 2229 Fragments arranged by size: 2229 1676 1545 1267 97 PasI CC'CwG_GG Cuts at: 1348 3220 1348 Size: 1872 4942 PciI A'CATG_T Cuts at: 5713 5713 Size: 6814 PflMI CCAn_nnn'nTGG Cuts at: 1108 3778 4021 1108 Size: 2670 243 3901 Fragments arranged by size: 3901 2670 243 PfoI T'CCnGG_A Cuts at: 2368 2679 2727 2967 3771 3891 4029 4062 2368 Size: 311 48 240 804 120 138 33 5120 Fragments arranged by size: 5120 804 311 240 138 120 48 33 PmeI GTTT'AAAC Cuts at: 4118 4118 Size: 6814 PmlI CAC'GTG Cuts at: 2267 2267 Size: 6814 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4883 4915 6396 6428 4883 Size: 32 1481 32 5269 Fragments arranged by size: 5269 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2130 2713 3512 3883 4075 2130 Size: 583 799 371 192 4869 Fragments arranged by size: 4869 799 583 371 192 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6814 PsiI TTA'TAA Cuts at: 4384 4384 Size: 6814 PspOMI G'GGCC_C Cuts at: 2077 3861 2077 Size: 1784 5030 PstI C_TGCA'G Cuts at: 830 2626 3024 3195 3325 3399 3555 3711 3942 Size: 1796 398 171 130 74 156 156 231 Cuts at: 3942 3996 4047 4166 830 Size: 54 51 119 3478 Fragments arranged by size: 3478 1796 398 231 171 156 156 130 119 74 54 51 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6814 PvuII CAG'CTG Cuts at: 2340 3097 3823 2340 Size: 757 726 5331 Fragments arranged by size: 5331 757 726 SacI G_AGCT'C Cuts at: 2768 3216 2768 Size: 448 6366 SacII CC_GC'GG Cuts at: 3881 3881 Size: 6814 SalI G'TCGA_C Cuts at: 1936 4156 1936 Size: 2220 4594 SanDI GG'GwC_CC Cuts at: 2130 3512 2130 Size: 1382 5432 SapI GCTCTTCn'nnn_ Cuts at: 3524 3524 Size: 6814 SbfI CC_TGCA'GG Cuts at: 3942 4166 3942 Size: 224 6590 ScaI AGT'ACT Cuts at: 5062 6774 5062 Size: 1712 5102 SexAI A'CCwGG_T Cuts at: 2394 2394 Size: 6814 SfcI C'TryA_G Cuts at: 826 1045 2622 3020 3191 3321 3395 3551 3707 Size: 219 1577 398 171 130 74 156 156 Cuts at: 3707 3938 3992 4043 4162 5297 5978 6169 826 Size: 231 54 51 119 1135 681 191 1471 Fragments arranged by size: 1577 1471 1135 681 398 231 219 191 171 156 156 130 119 74 54 51 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6814 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6814 SmaI CCC'GGG Cuts at: 1872 3860 4141 1872 Size: 1988 281 4545 Fragments arranged by size: 4545 1988 281 SmlI C'TyrA_G Cuts at: 820 1017 1943 2100 3461 4918 5819 6081 820 Size: 197 926 157 1361 1457 901 262 1553 Fragments arranged by size: 1553 1457 1361 926 901 262 197 157 SnaBI TAC'GTA Cuts at: 493 4605 493 Size: 4112 2702 SpeI A'CTAG_T Cuts at: 152 3905 152 Size: 3753 3061 SphI G_CATG'C Cuts at: 1132 4172 1132 Size: 3040 3774 SrfI GCCC'GGGC Cuts at: 3860 3860 Size: 6814 SspI AAT'ATT Cuts at: 5 52 4738 5 Size: 47 4686 2081 Fragments arranged by size: 4686 2081 47 StuI AGG'CCT Cuts at: 1517 3454 1517 Size: 1937 4877 StyI C'CwwG_G Cuts at: 513 1065 2297 4253 513 Size: 552 1232 1956 3074 Fragments arranged by size: 3074 1956 1232 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2486 3233 3363 4841 4858 5011 5196 Size: 1255 906 747 130 1478 17 153 185 Cuts at: 5196 5641 325 Size: 445 1498 Fragments arranged by size: 1498 1478 1255 906 747 445 185 153 130 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2931 5060 6772 Size: 274 80 33 51 1443 954 2129 1712 Cuts at: 6772 96 Size: 138 Fragments arranged by size: 2129 1712 1443 954 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2187 2219 3940 3972 6774 6806 2187 Size: 32 1721 32 2802 32 2195 Fragments arranged by size: 2802 2195 1721 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 6814 XbaI T'CTAG_A Cuts at: 4150 4150 Size: 6814 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6814 XmaI C'CCGG_G Cuts at: 1870 3858 4139 1870 Size: 1988 281 4545 Fragments arranged by size: 4545 1988 281 XmnI GAAnn'nnTTC Cuts at: 2955 3332 4943 2955 Size: 377 1611 4826 Fragments arranged by size: 4826 1611 377 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3421 4622 276 Size: 53 83 186 936 1887 1201 2468 Fragments arranged by size: 2468 1887 1201 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BstZ17I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SacI SacII SalI SanDI SapI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SrfI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI Bpu10I BsiWI Bsu36I DraIII EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PspXI PsrI RsrII SfiI SfoI SwaI XcmI