FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDF0390, 275 aa
  1>>>pF1KSDF0390 275 - 275 aa - 275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6158+/-0.00075; mu= 10.4957+/- 0.046
 mean_var=117.7746+/-22.860, 0's: 0 Z-trim(112.9): 52  B-trim: 9 in 1/53
 Lambda= 0.118181
 statistics sampled from 13579 (13629) to 13579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.419), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS12156.2 CAPS gene_id:828|Hs108|chr19           ( 275) 1879 330.5 7.7e-91
CCDS45934.2 CAPS gene_id:828|Hs108|chr19           ( 248) 1493 264.7 4.6e-71
CCDS3912.2 CAPSL gene_id:133690|Hs108|chr5         ( 208)  713 131.6 4.4e-31
CCDS73497.1 CAPS2 gene_id:84698|Hs108|chr12        ( 382)  365 72.5 5.1e-13


>>CCDS12156.2 CAPS gene_id:828|Hs108|chr19                (275 aa)
 initn: 1879 init1: 1879 opt: 1879  Z-score: 1744.3  bits: 330.5 E(32554): 7.7e-91
Smith-Waterman score: 1879; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)

               10        20        30        40        50        60
pF1KSD MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKD
              190       200       210       220       230       240

              250       260       270     
pF1KSD GQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
       :::::::::::::::::::::::::::::::::::
CCDS12 GQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
              250       260       270     

>>CCDS45934.2 CAPS gene_id:828|Hs108|chr19                (248 aa)
 initn: 1562 init1: 1493 opt: 1493  Z-score: 1389.2  bits: 264.7 E(32554): 4.6e-71
Smith-Waterman score: 1631; 90.2% identity (90.2% similar) in 275 aa overlap (1-275:1-248)

               10        20        30        40        50        60
pF1KSD MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKD
       ::::::::::::::::::::::::::::::::::::                        
CCDS45 EAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKV------------------------
              190       200       210                              

              250       260       270     
pF1KSD GQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
          ::::::::::::::::::::::::::::::::
CCDS45 ---TLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
           220       230       240        

>>CCDS3912.2 CAPSL gene_id:133690|Hs108|chr5              (208 aa)
 initn: 709 init1: 572 opt: 713  Z-score: 671.6  bits: 131.6 E(32554): 4.4e-31
Smith-Waterman score: 713; 50.8% identity (81.5% similar) in 195 aa overlap (82-275:14-208)

              60        70        80        90       100       110 
pF1KSD LPLATVSPGTTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQG
                                     . . .. ..   .:.:: :::.::..::.:
CCDS39                  MAGTARHDREMAIQAKKKLTTATDPIERLRLQCLARGSAGIKG
                                10        20        30        40   

             120       130       140       150       160       170 
pF1KSD LARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA
       :.: :: .: :..:.::  :: .::   ..:... :.: . :..:..:.::.:..::: .
CCDS39 LGRVFRIMDDDNNRTLDFKEFMKGLNDYAVVMEKEEVEELFRRFDKDGNGTIDFNEFLLT
            50        60        70        80        90       100   

             180       190       200       210       220       230 
pF1KSD LRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFL
       ::::::.::. ::  :: :::..::::.:..::: ::... ::: ..:::.:..:.:.::
CCDS39 LRPPMSRARKEVIMQAFRKLDKTGDGVITIEDLREVYNAKHHPKYQNGEWSEEQVFRKFL
           110       120       130       140       150       160   

              240       250       260       270     
pF1KSD DNFDSS-EKDGQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
       :::::  .::: ::  ::..::.:::::..::  :. :: .::.:
CCDS39 DNFDSPYDKDGLVTPEEFMNYYAGVSASIDTDVYFIIMMRTAWKL
           170       180       190       200        

>>CCDS73497.1 CAPS2 gene_id:84698|Hs108|chr12             (382 aa)
 initn: 364 init1: 261 opt: 365  Z-score: 347.2  bits: 72.5 E(32554): 5.1e-13
Smith-Waterman score: 365; 32.2% identity (65.6% similar) in 183 aa overlap (92-273:198-380)

              70        80        90       100       110       120 
pF1KSD TQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDR
                                     : .. :. .  .::.  . ::...:.:::.
CCDS73 QIALDSLKTASMEQEDDIIIQETNDRLVFKAIQDVLKEKLHKRGVRILTGLGKYFQQLDK
       170       180       190       200       210       220       

             130       140       150       160       170       180 
pF1KSD DGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQARE
       .:.  ::  .:.:.:  . : ... . :..    . ::.: .:  :: :..   :.. :.
CCDS73 EGNGLLDKADFKQALKVFHLEVSEKDFESAWLILNDNGNGKVDYGEFKRGIIGEMNEYRK
       230       240       250       260       270       280       

             190       200       210       220       230        240
pF1KSD AVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFD-SSEKD
       . .  :: ::: . .: : . ..:  : .. : .: ::. ::.:.   ::...  .  :.
CCDS73 SYVRKAFMKLDFNKSGSVPIINIRKCYCAKKHSQVISGHSTEEEIKSSFLETLKVACSKS
       290       300       310       320       330       340       

              250       260       270     
pF1KSD GQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL
        .:. .::.::: :.: ..  ::.:: .. . :  
CCDS73 DEVSYGEFEDYYEGLSIGIVDDEDFVNILRTPWGI
       350       360       370       380  




275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:01:11 2016 done: Thu Nov  3 09:01:11 2016
 Total Scan time:  2.480 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]