FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KSDA1916, 545 aa 1>>>pF1KSDA1916 545 - 545 aa - 545 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7716+/-0.000538; mu= 15.7434+/- 0.033 mean_var=114.4338+/-24.260, 0's: 0 Z-trim(109.4): 368 B-trim: 191 in 2/52 Lambda= 0.119894 statistics sampled from 17055 (17532) to 17055 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.551), E-opt: 0.2 (0.206), width: 16 Scan time: 9.430 The best scores are: opt bits E(85289) NP_060646 (OMIM: 608301) leucine-rich repeat LGI f ( 545) 3634 640.9 3.1e-183 NP_005088 (OMIM: 600512,604619) leucine-rich gliom ( 557) 2129 380.5 7.2e-105 NP_644807 (OMIM: 608302) leucine-rich repeat LGI f ( 548) 2006 359.3 1.8e-98 XP_011512152 (OMIM: 608301) PREDICTED: leucine-ric ( 331) 1842 330.7 4.4e-90 XP_016863845 (OMIM: 608301) PREDICTED: leucine-ric ( 287) 1834 329.2 1e-89 NP_001295205 (OMIM: 600512,604619) leucine-rich gl ( 509) 1733 312.0 2.8e-84 NP_644813 (OMIM: 608303) leucine-rich repeat LGI f ( 537) 1494 270.7 8.1e-72 XP_016872400 (OMIM: 600512,604619) PREDICTED: leuc ( 281) 1006 186.0 1.3e-46 NP_001295204 (OMIM: 600512,604619) leucine-rich gl ( 291) 998 184.6 3.6e-46 XP_011524897 (OMIM: 608303) PREDICTED: leucine-ric ( 365) 902 168.1 4.2e-41 XP_016881918 (OMIM: 608303) PREDICTED: leucine-ric ( 365) 902 168.1 4.2e-41 XP_016881919 (OMIM: 608303) PREDICTED: leucine-ric ( 365) 902 168.1 4.2e-41 XP_016881917 (OMIM: 608303) PREDICTED: leucine-ric ( 365) 902 168.1 4.2e-41 XP_016872401 (OMIM: 600512,604619) PREDICTED: leuc ( 243) 602 116.1 1.3e-25 NP_848665 (OMIM: 610462) reticulon-4 receptor-like ( 420) 348 72.4 3.2e-12 NP_001258875 (OMIM: 603745) slit homolog 3 protein (1530) 353 73.8 4.3e-12 XP_016865268 (OMIM: 603745) PREDICTED: slit homolo (1460) 352 73.6 4.7e-12 NP_003053 (OMIM: 603745) slit homolog 3 protein is (1523) 352 73.6 4.9e-12 XP_011515759 (OMIM: 615904) PREDICTED: peroxidasin (1439) 321 68.2 1.9e-10 XP_005264764 (OMIM: 269400,605158) PREDICTED: pero (1455) 320 68.1 2.2e-10 XP_016874279 (OMIM: 608870) PREDICTED: leucine-ric ( 623) 307 65.4 5.8e-10 XP_016867994 (OMIM: 610486) PREDICTED: leucine-ric ( 653) 305 65.1 7.6e-10 NP_071426 (OMIM: 610486) leucine-rich repeat-conta ( 653) 305 65.1 7.6e-10 XP_011514763 (OMIM: 610486) PREDICTED: leucine-ric ( 653) 305 65.1 7.6e-10 XP_011536195 (OMIM: 608870) PREDICTED: leucine-ric (1041) 307 65.7 8.2e-10 NP_001129523 (OMIM: 608870) leucine-rich repeats a (1059) 307 65.7 8.3e-10 NP_700356 (OMIM: 608870) leucine-rich repeats and (1119) 307 65.7 8.7e-10 XP_011531881 (OMIM: 608868) PREDICTED: leucine-ric ( 833) 305 65.2 9e-10 XP_016861625 (OMIM: 608868) PREDICTED: leucine-ric ( 833) 305 65.2 9e-10 XP_016861624 (OMIM: 608868) PREDICTED: leucine-ric ( 867) 305 65.2 9.2e-10 XP_011531880 (OMIM: 608868) PREDICTED: leucine-ric (1045) 305 65.3 1e-09 XP_016861623 (OMIM: 608868) PREDICTED: leucine-ric (1068) 305 65.3 1.1e-09 NP_056356 (OMIM: 608868) leucine-rich repeats and (1093) 305 65.3 1.1e-09 XP_005248194 (OMIM: 612303) PREDICTED: adhesion G ( 833) 297 63.8 2.3e-09 XP_011515758 (OMIM: 615904) PREDICTED: peroxidasin (1439) 300 64.6 2.4e-09 XP_016864334 (OMIM: 603746) PREDICTED: slit homolo (1495) 298 64.3 3.1e-09 XP_011512211 (OMIM: 603746) PREDICTED: slit homolo (1499) 298 64.3 3.1e-09 XP_006714049 (OMIM: 603746) PREDICTED: slit homolo (1509) 298 64.3 3.1e-09 NP_004778 (OMIM: 603746) slit homolog 2 protein is (1529) 298 64.3 3.2e-09 XP_005248268 (OMIM: 603746) PREDICTED: slit homolo (1533) 298 64.3 3.2e-09 NP_660333 (OMIM: 612303) adhesion G protein-couple (1321) 297 64.0 3.2e-09 NP_003052 (OMIM: 603742) slit homolog 1 protein pr (1534) 295 63.8 4.5e-09 XP_005271426 (OMIM: 608869,615112) PREDICTED: leuc ( 958) 292 63.0 4.7e-09 NP_001299615 (OMIM: 608869,615112) leucine-rich re ( 962) 292 63.0 4.7e-09 NP_055628 (OMIM: 608869,615112) leucine-rich repea (1065) 292 63.1 5.1e-09 NP_001276065 (OMIM: 603746) slit homolog 2 protein (1521) 291 63.1 7.3e-09 NP_001276064 (OMIM: 603746) slit homolog 2 protein (1525) 291 63.1 7.3e-09 XP_016873565 (OMIM: 608817) PREDICTED: leucine-ric ( 640) 277 60.3 2.1e-08 XP_011518542 (OMIM: 608817) PREDICTED: leucine-ric ( 640) 277 60.3 2.1e-08 XP_016873559 (OMIM: 608817) PREDICTED: leucine-ric ( 640) 277 60.3 2.1e-08 >>NP_060646 (OMIM: 608301) leucine-rich repeat LGI famil (545 aa) initn: 3634 init1: 3634 opt: 3634 Z-score: 3410.7 bits: 640.9 E(85289): 3.1e-183 Smith-Waterman score: 3634; 99.8% identity (100.0% similar) in 545 aa overlap (1-545:1-545) 10 20 30 40 50 60 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD GDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 GDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD IETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 IETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD WLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVSVDTFNSKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 WLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVSVDTFNSKN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD DVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVVVAQLFGGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 DVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVVVAQLFGGS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KSD HIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLSTVYKWNSKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 HIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLSTVYKWNSKG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KSD FYSYQSLHEWFRDTDAEFVDIDGKSHLILSSRSQVPIILQWNKSSKKFVPHGDIPNMEDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 FYSYQSLHEWFRDTDAEFVDIDGKSHLILSSRSQVPIILQWNKSSKKFVPHGDIPNMEDV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KSD LAVKSFRMQNTLYLSLTRFIGDSRVMRWNSKQFVEIQALPSRGAMTLQPFSFKDNHYLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LAVKSFRMQNTLYLSLTRFIGDSRVMRWNSKQFVEIQALPSRGAMTLQPFSFKDNHYLAL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KSD GSDYTFSQIYQWDKEKQLFKKFKEIYVQAPRSFTAVSTDRRDFLFASSFKGKTKIFEHII :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: NP_060 GSDYTFSQIYQWDKEKQLFKKFKEIYVQAPRSFTAVSTDRRDFFFASSFKGKTKIFEHII 490 500 510 520 530 540 pF1KSD VDLSL ::::: NP_060 VDLSL >>NP_005088 (OMIM: 600512,604619) leucine-rich glioma-in (557 aa) initn: 2272 init1: 1484 opt: 2129 Z-score: 2003.7 bits: 380.5 E(85289): 7.2e-105 Smith-Waterman score: 2129; 56.1% identity (81.1% similar) in 540 aa overlap (11-544:19-556) 10 20 30 40 50 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGS .. .: ::.: : . .. .:::.:.:::.. .: .. NP_005 MESERSKRMGNACIPLKRIAYFLCLLSALLLTEGKKPAK--PKCPAVCTCTKDNALCENA 10 20 30 40 50 60 70 80 90 100 110 pF1KSD SWVPRIVPGDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLE .:: :: :. :::.: . :.::.. : :::::::..:::: .: :::: :: ::: NP_005 RSIPRTVPPDVISLSFVRSGFTEISEGSFLFTPSLQLLLFTSNSFDVISDDAFIGLPHLE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KSD YLFIEGNKIETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECD :::::.:.:..:::..::::..: :::::::....::.:.:. :::: ..:::::.:.:: NP_005 YLFIENNNIKSISRHTFRGLKSLIHLSLANNNLQTLPKDIFKGLDSLTNVDLRGNSFNCD 120 130 140 150 160 170 180 190 200 210 220 230 pF1KSD CKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVS :: ::: :: ::.:: :. : :::::...:.:...: :..: :.:. : :::::.: NP_005 CKLKWLVEWLGHTNATVEDIYCEGPPEYKKRKINSLSSKDFDCIITEFAKSQDLPYQSLS 180 190 200 210 220 230 240 250 260 270 280 290 pF1KSD VDTFNSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVV .:::. :: ::.:::: .:. :::::.: .::.:::::: : : :: :.:. :..:. NP_005 IDTFSYLNDEYVVIAQPFTGKCIFLEWDHVEKTFRNYDNITGTSTVVCKPIVIETQLYVI 240 250 260 270 280 290 300 310 320 330 340 350 pF1KSD VAQLFGGSHIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLST :::::::::::: : .::.:.::::. .: :::::: :.:... .::.:::::::..: NP_005 VAQLFGGSHIYKRDSFANKFIKIQDIEILKIRKPNDIETFKIENNWYFVVADSSKAGFTT 300 310 320 330 340 350 360 370 380 390 400 pF1KSD VYKWNSKGFYSYQSLHEWFRDTDAEFVDIDGKS------HLILSSRSQVPIILQWNKSSK .::::..::::.:::: :.::::.:...: :::::: :: :.: ::::... NP_005 IYKWNGNGFYSHQSLHAWYRDTDVEYLEIVRTPQTLRTPHLILSSSSQRPVIYQWNKATQ 360 370 380 390 400 410 410 420 430 440 450 460 pF1KSD KFVPHGDIPNMEDVLAVKSFRMQNTLYLSLTRFIGDSRVMRWNSKQFVEIQALPSRGAMT :. . :::::::: ::: : ... .:. ::::::::.::.:....: .:: .::::.:. NP_005 LFTNQTDIPNMEDVYAVKHFSVKGDVYICLTRFIGDSKVMKWGGSSFQDIQRMPSRGSMV 420 430 440 450 460 470 470 480 490 500 510 520 pF1KSD LQPFSFKDNHYLALGSDYTFSQIYQWDKEKQLFKKFKEIYVQAPRSFTAVSTDRRDFLFA .::..... .: :::::.:.:.:.:: :: : ::.:. :::::::: :: ..:.:::: NP_005 FQPLQINNYQYAILGSDYSFTQVYNWDAEKAKFVKFQELNVQAPRSFTHVSINKRNFLFA 480 490 500 510 520 530 530 540 pF1KSD SSFKGKTKIFEHIIVDLSL :::::.:.:..:.::::: NP_005 SSFKGNTQIYKHVIVDLSA 540 550 >>NP_644807 (OMIM: 608302) leucine-rich repeat LGI famil (548 aa) initn: 1980 init1: 1980 opt: 2006 Z-score: 1888.8 bits: 359.3 E(85289): 1.8e-98 Smith-Waterman score: 2006; 51.7% identity (80.4% similar) in 542 aa overlap (5-544:7-547) 10 20 30 40 50 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVR--RLARCPATCSCTKESIICVGSSWVP ::: : ::: : . ::. . . : . :: .::::... .:: :. :: NP_644 MAGLRARGGPGP-GLLALSALGFCLMLQVSAKRPPKTPPCPPSCSCTRDTAFCVDSKAVP 10 20 30 40 50 60 70 80 90 100 110 pF1KSD RIVPGDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFI : .:... ::.:::..::::.: ::::: ::.::::::.::.: :.::.:: ::.:::: NP_644 RNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KSD EGNKIETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAK :.: : ..:. .::::..:::::::::....::::.: :: : .::::::...::::.: NP_644 ENNDIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILNDLDLRGNSLNCDCKVK 120 130 140 150 160 170 180 190 200 210 220 230 pF1KSD WLYLWLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVSVDTF :: :: ::.::. . : .::..::.:..:. ...: :::::..::: . .::.. : NP_644 WLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLAFPAVSAEPF 180 190 200 210 220 230 240 250 260 270 280 290 pF1KSD NSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVVVAQL ..:.:.:.:::.. : .:.::..: ..:.:: : . : : :: ...:.:..:::::: NP_644 LYSSDLYLALAQPGVSACTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDSQLYVVVAQL 240 250 260 270 280 290 300 310 320 330 340 350 pF1KSD FGGSHIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLSTVYKW ::::.::..: . :.:...:::. .:. ::::.: :.:: . .:..::::::: ...:.: NP_644 FGGSYIYHWDPNTTRFTRLQDIDPQRVRKPNDLEAFRIDGDWYFAVADSSKAGATSLYRW 300 310 320 330 340 350 360 370 380 390 400 410 pF1KSD NSKGFYSYQSLHEWFRDTDAEFVDIDGKSHLILSSRSQVPIILQWNKSSKKFVPHGDIPN ...::::.:.:: : :::: :::: .:: .::.:: ::.:.: ::....:.:: .:.. . NP_644 HQNGFYSHQALHPWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRTQKQFVAQGEVTQ 360 370 380 390 400 410 420 430 440 450 460 470 pF1KSD MEDVLAVKSFRMQNTLYLSLTRFIGDSRVMRWNSKQFVEIQALPSRGAMTLQPFSFKDNH . :. ::: :: :: :.:.::::...::.. .: :.:::::::...:::: . NP_644 VPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGRR 420 430 440 450 460 470 480 490 500 510 520 530 pF1KSD YLALGSDYTFSQIYQWDKEKQLFKKFKEIYVQAPRSFTAVSTDRRDFLFASSFKGKTKIF :::::::..:.::::::. .: : .:.:. :::::.: . . ..:.: ::::.: .. NP_644 YLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVY 480 490 500 510 520 530 540 pF1KSD EHIIVDLSL .::.:::: NP_644 RHIVVDLSA 540 >>XP_011512152 (OMIM: 608301) PREDICTED: leucine-rich re (331 aa) initn: 1842 init1: 1842 opt: 1842 Z-score: 1738.2 bits: 330.7 E(85289): 4.4e-90 Smith-Waterman score: 1842; 100.0% identity (100.0% similar) in 274 aa overlap (1-274:1-274) 10 20 30 40 50 60 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD GDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD IETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD WLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVSVDTFNSKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 WLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVSVDTFNSKN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD DVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVVVAQLFGGS :::::::::::::::::::::::::::::::::: XP_011 DVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGLVTMLPKGWLQLSMCTRGERETHGHV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KSD HIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLSTVYKWNSKG XP_011 HPEVHFPLFSLRLILAFSILVYFVRLLISAG 310 320 330 >>XP_016863845 (OMIM: 608301) PREDICTED: leucine-rich re (287 aa) initn: 1834 init1: 1834 opt: 1834 Z-score: 1731.5 bits: 329.2 E(85289): 1e-89 Smith-Waterman score: 1834; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273) 10 20 30 40 50 60 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KSD GDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KSD IETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KSD WLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVSVDTFNSKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVSVDTFNSKN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KSD DVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVVVAQLFGGS ::::::::::::::::::::::::::::::::: XP_016 DVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITVEDDEHGTTLESAA 250 260 270 280 310 320 330 340 350 360 pF1KSD HIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLSTVYKWNSKG >>NP_001295205 (OMIM: 600512,604619) leucine-rich glioma (509 aa) initn: 1976 init1: 1092 opt: 1733 Z-score: 1634.0 bits: 312.0 E(85289): 2.8e-84 Smith-Waterman score: 1812; 50.2% identity (73.1% similar) in 540 aa overlap (11-544:19-508) 10 20 30 40 50 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGS .. .: ::.: : . .. .:::.:.:::.. .: .. NP_001 MESERSKRMGNACIPLKRIAYFLCLLSALLLTEGKKPAK--PKCPAVCTCTKDNALCENA 10 20 30 40 50 60 70 80 90 100 110 pF1KSD SWVPRIVPGDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLE .:: :: :. :::.: . :.::.. : :::::: NP_001 RSIPRTVPPDVISLSFVRSGFTEISEGSFLFTPSLQLL---------------------- 60 70 80 90 120 130 140 150 160 170 pF1KSD YLFIEGNKIETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECD :::::....::.:.:. :::: ..:::::.:.:: NP_001 --------------------------SLANNNLQTLPKDIFKGLDSLTNVDLRGNSFNCD 100 110 120 130 180 190 200 210 220 230 pF1KSD CKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVS :: ::: :: ::.:: :. : :::::...:.:...: :..: :.:. : :::::.: NP_001 CKLKWLVEWLGHTNATVEDIYCEGPPEYKKRKINSLSSKDFDCIITEFAKSQDLPYQSLS 140 150 160 170 180 190 240 250 260 270 280 290 pF1KSD VDTFNSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVV .:::. :: ::.:::: .:. :::::.: .::.:::::: : : :: :.:. :..:. NP_001 IDTFSYLNDEYVVIAQPFTGKCIFLEWDHVEKTFRNYDNITGTSTVVCKPIVIETQLYVI 200 210 220 230 240 250 300 310 320 330 340 350 pF1KSD VAQLFGGSHIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLST :::::::::::: : .::.:.::::. .: :::::: :.:... .::.:::::::..: NP_001 VAQLFGGSHIYKRDSFANKFIKIQDIEILKIRKPNDIETFKIENNWYFVVADSSKAGFTT 260 270 280 290 300 310 360 370 380 390 400 pF1KSD VYKWNSKGFYSYQSLHEWFRDTDAEFVDIDGKS------HLILSSRSQVPIILQWNKSSK .::::..::::.:::: :.::::.:...: :::::: :: :.: ::::... NP_001 IYKWNGNGFYSHQSLHAWYRDTDVEYLEIVRTPQTLRTPHLILSSSSQRPVIYQWNKATQ 320 330 340 350 360 370 410 420 430 440 450 460 pF1KSD KFVPHGDIPNMEDVLAVKSFRMQNTLYLSLTRFIGDSRVMRWNSKQFVEIQALPSRGAMT :. . :::::::: ::: : ... .:. ::::::::.::.:....: .:: .::::.:. NP_001 LFTNQTDIPNMEDVYAVKHFSVKGDVYICLTRFIGDSKVMKWGGSSFQDIQRMPSRGSMV 380 390 400 410 420 430 470 480 490 500 510 520 pF1KSD LQPFSFKDNHYLALGSDYTFSQIYQWDKEKQLFKKFKEIYVQAPRSFTAVSTDRRDFLFA .::..... .: :::::.:.:.:.:: :: : ::.:. :::::::: :: ..:.:::: NP_001 FQPLQINNYQYAILGSDYSFTQVYNWDAEKAKFVKFQELNVQAPRSFTHVSINKRNFLFA 440 450 460 470 480 490 530 540 pF1KSD SSFKGKTKIFEHIIVDLSL :::::.:.:..:.::::: NP_001 SSFKGNTQIYKHVIVDLSA 500 >>NP_644813 (OMIM: 608303) leucine-rich repeat LGI famil (537 aa) initn: 1507 init1: 1099 opt: 1494 Z-score: 1410.3 bits: 270.7 E(85289): 8.1e-72 Smith-Waterman score: 1494; 41.2% identity (71.1% similar) in 539 aa overlap (9-544:2-536) 10 20 30 40 50 60 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVP :. :.:::::..: .. : ..:: :::.:.: .: :: .: NP_644 MGGAGILLLLLAGAGVV--VAWRPPKGKCPLRCSCSKDSALCEGSPDLPVSFS 10 20 30 40 50 70 80 90 100 110 120 pF1KSD GDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNK . ::::: ...: : ..:::.:::..::::..:.::::::: ::.::::: :. NP_644 PTLLSLSLVRTGVTQLKAGSFLRIPSLHLLLFTSNSFSVIEDDAFAGLSHLQYLFIEDNE 60 70 80 90 100 110 130 140 150 160 170 180 pF1KSD IETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYL : .::.::.::::.::::::::::...::: .: ::.: ..::::: :.:::.. :: NP_644 IGSISKNALRGLRSLTHLSLANNHLETLPRFLFRGLDTLTHVDLRGNPFQCDCRVLWLLQ 120 130 140 150 160 170 190 200 210 220 230 240 pF1KSD WLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVSVDTFNSKN :. .:..:. : :: .. .:. . ..: . .. ::. ...::. :. .. NP_644 WMPTVNASVGTGACAGPASLSHMQLHHLDPKTFKCRAIELSWFQTVGESALSVEPFSYQG 180 190 200 210 220 230 250 260 270 280 290 300 pF1KSD DVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVVVAQLFGGS . ....::: :..: ::. . :: ... . :.:.:: ... ..::..:.:.::: NP_644 EPHIVLAQPFAGRCLILSWDYSLQRFRPEEELPAASVVSCKPLVLGPSLFVLAARLWGGS 240 250 260 270 280 290 310 320 330 340 350 360 pF1KSD HIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLSTVYKWNSKG ... ... : . :. .::: ::. .. . ::.::.:::: .:. .. : NP_644 QLWARPSPGLRLAPTQTLAPRRLLRPNDAELLWLEGQPCFVVADASKAGSTTLLCRDGPG 300 310 320 330 340 350 370 380 390 400 410 420 pF1KSD FYSYQSLHEWFRDTDAEFVDIDGKSHLILSSRSQVPIILQWNKSSKKFVPHGDIPNMEDV :: .:::: : :::::: ...::. ::.:.: :: :....: .. .: . :::. ::: NP_644 FYPHQSLHAWHRDTDAEALELDGRPHLLLASASQRPVLFHW--TGGRFERRTDIPEAEDV 360 370 380 390 400 430 440 450 460 470 480 pF1KSD LAVKSFRMQNTLYLSLTRFIGDSRVMRWNSKQFVEIQALPSRGAMTLQPFSFKDNHYLAL :.. :. . ..: :::.:::: ::::....: .: :::::: ..::. . .. : NP_644 YATRHFQAGGDVFLCLTRYIGDSMVMRWDGSMFRLLQQLPSRGAHVFQPLLIARDQLAIL 410 420 430 440 450 460 490 500 510 520 530 pF1KSD GSDYTFSQIYQWDKEKQLFKKFKEI---YVQAPRSFTAVSTDRRDFLFASSFKGKTKIFE :::..:::. . . .: :.. ..:. . :::.:. .. : ::::. ::: :.:.. NP_644 GSDFAFSQVLRLEPDKGLLEPLQELGPPALVAPRAFAHITMAGRRFLFAACFKGPTQIYQ 470 480 490 500 510 520 540 pF1KSD HIIVDLSL : .::: NP_644 HHEIDLSA 530 >>XP_016872400 (OMIM: 600512,604619) PREDICTED: leucine- (281 aa) initn: 1004 init1: 1004 opt: 1006 Z-score: 957.6 bits: 186.0 E(85289): 1.3e-46 Smith-Waterman score: 1006; 54.2% identity (79.2% similar) in 264 aa overlap (11-274:19-280) 10 20 30 40 50 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGS .. .: ::.: : . .. .:::.:.:::.. .: .. XP_016 MESERSKRMGNACIPLKRIAYFLCLLSALLLTEGKKPAK--PKCPAVCTCTKDNALCENA 10 20 30 40 50 60 70 80 90 100 110 pF1KSD SWVPRIVPGDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLE .:: :: :. :::.: . :.::.. : :::::::..:::: .: :::: :: ::: XP_016 RSIPRTVPPDVISLSFVRSGFTEISEGSFLFTPSLQLLLFTSNSFDVISDDAFIGLPHLE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KSD YLFIEGNKIETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECD :::::.:.:..:::..::::..: :::::::....::.:.:. :::: ..:::::.:.:: XP_016 YLFIENNNIKSISRHTFRGLKSLIHLSLANNNLQTLPKDIFKGLDSLTNVDLRGNSFNCD 120 130 140 150 160 170 180 190 200 210 220 230 pF1KSD CKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVS :: ::: :: ::.:: :. : :::::...:.:...: :..: :.:. : :::::.: XP_016 CKLKWLVEWLGHTNATVEDIYCEGPPEYKKRKINSLSSKDFDCIITEFAKSQDLPYQSLS 180 190 200 210 220 230 240 250 260 270 280 290 pF1KSD VDTFNSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVV .:::. :: ::.:::: .:. :::::.: .::.:::::: XP_016 IDTFSYLNDEYVVIAQPFTGKCIFLEWDHVEKTFRNYDNITGS 240 250 260 270 280 300 310 320 330 340 350 pF1KSD VAQLFGGSHIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLST >>NP_001295204 (OMIM: 600512,604619) leucine-rich glioma (291 aa) initn: 996 init1: 996 opt: 998 Z-score: 949.9 bits: 184.6 E(85289): 3.6e-46 Smith-Waterman score: 998; 54.0% identity (79.1% similar) in 263 aa overlap (11-273:19-279) 10 20 30 40 50 pF1KSD MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGS .. .: ::.: : . .. .:::.:.:::.. .: .. NP_001 MESERSKRMGNACIPLKRIAYFLCLLSALLLTEGKKPAK--PKCPAVCTCTKDNALCENA 10 20 30 40 50 60 70 80 90 100 110 pF1KSD SWVPRIVPGDISSLSLVNGTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLE .:: :: :. :::.: . :.::.. : :::::::..:::: .: :::: :: ::: NP_001 RSIPRTVPPDVISLSFVRSGFTEISEGSFLFTPSLQLLLFTSNSFDVISDDAFIGLPHLE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KSD YLFIEGNKIETISRNAFRGLRDLTHLSLANNHIKALPRDVFSDLDSLIELDLRGNKFECD :::::.:.:..:::..::::..: :::::::....::.:.:. :::: ..:::::.:.:: NP_001 YLFIENNNIKSISRHTFRGLKSLIHLSLANNNLQTLPKDIFKGLDSLTNVDLRGNSFNCD 120 130 140 150 160 170 180 190 200 210 220 230 pF1KSD CKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKKLNDVTSFDYECTTTDFVVHQTLPYQSVS :: ::: :: ::.:: :. : :::::...:.:...: :..: :.:. : :::::.: NP_001 CKLKWLVEWLGHTNATVEDIYCEGPPEYKKRKINSLSSKDFDCIITEFAKSQDLPYQSLS 180 190 200 210 220 230 240 250 260 270 280 290 pF1KSD VDTFNSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFVV .:::. :: ::.:::: .:. :::::.: .::.::::: NP_001 IDTFSYLNDEYVVIAQPFTGKCIFLEWDHVEKTFRNYDNITVLREIHRFTNMS 240 250 260 270 280 290 300 310 320 330 340 350 pF1KSD VAQLFGGSHIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGLST >>XP_011524897 (OMIM: 608303) PREDICTED: leucine-rich re (365 aa) initn: 896 init1: 522 opt: 902 Z-score: 859.0 bits: 168.1 E(85289): 4.2e-41 Smith-Waterman score: 902; 35.8% identity (68.9% similar) in 366 aa overlap (182-544:1-364) 160 170 180 190 200 210 pF1KSD VFSDLDSLIELDLRGNKFECDCKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKKLNDVTSF . .:..:. : :: .. .:. . XP_011 MPTVNASVGTGACAGPASLSHMQLHHLDPK 10 20 30 220 230 240 250 260 270 pF1KSD DYECTTTDFVVHQTLPYQSVSVDTFNSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDN ..: . .. ::. ...::. :. ... ....::: :..: ::. . :: .. XP_011 TFKCRAIELSWFQTVGESALSVEPFSYQGEPHIVLAQPFAGRCLILSWDYSLQRFRPEEE 40 50 60 70 80 90 280 290 300 310 320 330 pF1KSD ITGQSIVGCKAILIDDQVFVVVAQLFGGSHIYKYDESWTKFVKFQDIEVSRISKPNDIEL . . :.:.:: ... ..::..:.:.:::... ... : . :. .::: :: XP_011 LPAASVVSCKPLVLGPSLFVLAARLWGGSQLWARPSPGLRLAPTQTLAPRRLLRPNDAEL 100 110 120 130 140 150 340 350 360 370 380 390 pF1KSD FQIDDETFFVIADSSKAGLSTVYKWNSKGFYSYQSLHEWFRDTDAEFVDIDGKSHLILSS . .. . ::.::.:::: .:. .. ::: .:::: : :::::: ...::. ::.:.: XP_011 LWLEGQPCFVVADASKAGSTTLLCRDGPGFYPHQSLHAWHRDTDAEALELDGRPHLLLAS 160 170 180 190 200 210 400 410 420 430 440 450 pF1KSD RSQVPIILQWNKSSKKFVPHGDIPNMEDVLAVKSFRMQNTLYLSLTRFIGDSRVMRWNSK :: :....: .. .: . :::. ::: :.. :. . ..: :::.:::: ::::... XP_011 ASQRPVLFHW--TGGRFERRTDIPEAEDVYATRHFQAGGDVFLCLTRYIGDSMVMRWDGS 220 230 240 250 260 460 470 480 490 500 pF1KSD QFVEIQALPSRGAMTLQPFSFKDNHYLALGSDYTFSQIYQWDKEKQLFKKFKEI---YVQ .: .: :::::: ..::. . .. ::::..:::. . . .: :.. ..:. . XP_011 MFRLLQQLPSRGAHVFQPLLIARDQLAILGSDFAFSQVLRLEPDKGLLEPLQELGPPALV 270 280 290 300 310 320 510 520 530 540 pF1KSD APRSFTAVSTDRRDFLFASSFKGKTKIFEHIIVDLSL :::.:. .. : ::::. ::: :.:..: .::: XP_011 APRAFAHITMAGRRFLFAACFKGPTQIYQHHEIDLSA 330 340 350 360 545 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 07:43:51 2016 done: Thu Nov 3 07:43:53 2016 Total Scan time: 9.430 Total Display time: 0.090 Function used was FASTA [36.3.4 Apr, 2011]