(Circular) (Six-base) MAPSORT of: pFN21ASDA1317.seq Check: 638 from: 1 to: 6013 pFN21ASDA1317 6013 bp With 182 enzymes: SgfI * January 16, 2009 15:31 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2290 2290 Size: 6013 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3823 278 Size: 53 83 186 936 2287 2468 Fragments arranged by size: 2468 2287 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3356 1937 Size: 1419 4594 Acc65I G'GTAC_C Cuts at: 3334 3334 Size: 6013 AclI AA'CG_TT Cuts at: 1563 4140 4513 1563 Size: 2577 373 3063 Fragments arranged by size: 3063 2577 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3117 4076 5460 5728 1632 Size: 1485 959 1384 268 1917 Fragments arranged by size: 1917 1485 1384 959 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5816 AflIII A'CryG_T Cuts at: 1203 4912 5889 1203 Size: 3709 977 1327 Fragments arranged by size: 3709 1327 977 AgeI A'CCGG_T Cuts at: 4844 4844 Size: 6013 AhdI GACnn_n'nnGTC Cuts at: 2974 4742 2974 Size: 1768 4245 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6013 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 6013 AlwNI CAG_nnn'CTG Cuts at: 3046 3756 5328 3046 Size: 710 1572 3731 Fragments arranged by size: 3731 1572 710 ApaI G_GGCC'C Cuts at: 3071 3071 Size: 6013 ApaLI G'TGCA_C Cuts at: 4070 5226 4070 Size: 1156 4857 ApoI r'AATT_y Cuts at: 1493 2420 2708 3240 3322 3548 3700 5809 1493 Size: 927 288 532 82 226 152 2109 1697 Fragments arranged by size: 2109 1697 927 532 288 226 152 82 AseI AT'TA_AT Cuts at: 160 1032 4567 160 Size: 872 3535 1606 Fragments arranged by size: 3535 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6013 AvaI C'yCGr_G Cuts at: 1870 1943 2058 3338 1870 Size: 73 115 1280 4545 Fragments arranged by size: 4545 1280 115 73 BamHI G'GATC_C Cuts at: 2537 3343 3710 2537 Size: 806 367 4840 Fragments arranged by size: 4840 806 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3334 4789 618 Size: 325 217 627 1547 1455 1842 Fragments arranged by size: 1842 1547 1455 627 325 217 BanII G_rGCy'C Cuts at: 1391 2677 3071 3332 1391 Size: 1286 394 261 4072 Fragments arranged by size: 4072 1286 394 261 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2341 2839 928 Size: 971 442 498 4102 Fragments arranged by size: 4102 971 498 442 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 4204 4238 1903 Size: 34 2267 34 3678 Fragments arranged by size: 3678 2267 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3227 3905 5115 3227 Size: 678 1210 4125 Fragments arranged by size: 4125 1210 678 BclI T'GATC_A Cuts at: 1548 2314 1548 Size: 766 5247 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4624 136 Size: 107 122 71 631 605 2952 1525 Fragments arranged by size: 2952 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2820 6008 2820 Size: 3188 2825 BlpI GC'TnA_GC Cuts at: 3430 3430 Size: 6013 Bme1580I G_kGCm'C Cuts at: 1790 3071 4074 5230 1790 Size: 1281 1003 1156 2573 Fragments arranged by size: 2573 1281 1156 1003 BmgBI CAC'GTC Cuts at: 1318 2937 1318 Size: 1619 4394 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3744 4702 442 Size: 416 53 83 399 24 2327 958 1753 Fragments arranged by size: 2327 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6013 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3004 3004 Size: 6013 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2677 3124 3227 4673 1239 Size: 1438 447 103 1446 2579 Fragments arranged by size: 2579 1446 1438 447 103 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 4138 5003 5301 4138 Size: 865 298 4850 Fragments arranged by size: 4850 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2655 4676 882 Size: 617 1156 2021 2219 Fragments arranged by size: 2219 2021 1156 617 BsaAI yAC'GTr Cuts at: 493 1204 3310 3804 493 Size: 711 2106 494 2702 Fragments arranged by size: 2702 2106 711 494 BsaBI GATnn'nnATC Cuts at: 2156 6007 2156 Size: 3851 2162 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3820 4202 4837 275 Size: 53 83 186 936 2287 382 635 1451 Fragments arranged by size: 2287 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3120 4446 4844 5118 5265 5676 3120 Size: 1326 398 274 147 411 3457 Fragments arranged by size: 3457 1326 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5788 Fragments arranged by size: 5788 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 3212 3215 1186 Size: 2026 3 3984 Fragments arranged by size: 3984 2026 3 BseYI C'CCAG_C Cuts at: 5216 5712 5216 Size: 496 5517 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2527 1163 Size: 573 791 4649 Fragments arranged by size: 4649 791 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2503 3463 4224 5252 1540 Size: 275 186 502 960 761 1028 2301 Fragments arranged by size: 2301 1028 960 761 502 275 186 BsiHKAI G_wGCw'C Cuts at: 4074 4159 5230 4074 Size: 85 1071 4857 Fragments arranged by size: 4857 1071 85 BsmI GAATG_Cn' Cuts at: 3524 3617 3524 Size: 93 5920 BsmBI CGTCTCn'nnnn_ Cuts at: 2993 2993 Size: 6013 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2677 3071 3332 4074 4159 5230 1391 Size: 399 887 394 261 742 85 1071 2174 Fragments arranged by size: 2174 1071 887 742 399 394 261 85 BspEI T'CCGG_A Cuts at: 3120 5676 3120 Size: 2556 3457 BspHI T'CATG_A Cuts at: 3902 5632 3902 Size: 1730 4283 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2290 3368 844 Size: 1446 1078 3489 Fragments arranged by size: 3489 1446 1078 BsrBI CCG'CTC Cuts at: 1394 1823 2931 3900 1394 Size: 429 1108 969 3507 Fragments arranged by size: 3507 1108 969 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2950 4508 4682 65 Size: 1183 1702 1558 174 1396 Fragments arranged by size: 1702 1558 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4657 4844 1700 Size: 110 2847 187 2869 Fragments arranged by size: 2869 2847 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6013 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6013 BssSI C'ACGA_G Cuts at: 4073 5085 4073 Size: 1012 5001 BstAPI GCAn_nnn'nTGC Cuts at: 794 2940 794 Size: 2146 3867 BstBI TT'CG_AA Cuts at: 2007 4817 2007 Size: 2810 3203 BstEII G'GTnAC_C Cuts at: 1184 2871 1184 Size: 1687 4326 BstYI r'GATC_y Cuts at: 1972 2537 2820 3343 3710 4095 4112 5564 5650 Size: 565 283 523 367 385 17 1452 86 Cuts at: 5650 5662 6008 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 565 523 385 367 346 283 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2094 2094 Size: 6013 BtgI C'CryG_G Cuts at: 513 1065 2022 513 Size: 552 957 4504 Fragments arranged by size: 4504 957 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5274 Fragments arranged by size: 5274 683 56 BtsI GCAGTG_nn' Cuts at: 2881 3529 4323 4343 2881 Size: 648 794 20 4551 Fragments arranged by size: 4551 794 648 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6013 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5978 DraI TTT'AAA Cuts at: 3317 3317 Size: 6013 DraIII CAC_nnn'GTG Cuts at: 2764 2764 Size: 6013 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 5020 809 Size: 507 3704 1802 Fragments arranged by size: 3704 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3460 4349 5978 Size: 54 1425 50 275 18 1630 889 1629 Cuts at: 5978 8 Size: 43 Fragments arranged by size: 1630 1629 1425 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3460 1537 Size: 275 1648 4090 Fragments arranged by size: 4090 1648 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3943 1353 Size: 2590 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3118 4600 4974 5120 387 Size: 1064 138 1529 1482 374 146 1280 Fragments arranged by size: 1529 1482 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2677 3117 3124 3227 4076 4673 5460 Size: 393 1045 440 7 103 849 597 787 Cuts at: 5460 5728 1239 Size: 268 1524 Fragments arranged by size: 1524 1045 849 787 597 440 393 268 103 7 EcoO109I rG'GnC_Cy Cuts at: 3067 3068 3067 Size: 1 6012 EcoRI G'AATT_C Cuts at: 2420 3322 3700 2420 Size: 902 378 4733 Fragments arranged by size: 4733 902 378 FspI TGC'GCA Cuts at: 4519 4519 Size: 6013 HaeII r_GCGC'y Cuts at: 1678 5160 1678 Size: 3482 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2688 2720 2726 2758 2960 Size: 32 135 32 1116 32 6 32 202 Cuts at: 2960 2992 3253 3285 4654 4686 4728 4760 1373 Size: 32 261 32 1369 32 42 32 2626 Fragments arranged by size: 2626 1369 1116 261 202 135 42 32 32 32 32 32 32 32 32 6 HincII GTy'rAC Cuts at: 669 1657 1938 3357 3603 669 Size: 988 281 1419 246 3079 Fragments arranged by size: 3079 1419 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6013 HpaI GTT'AAC Cuts at: 3603 3603 Size: 6013 KpnI G_GTAC'C Cuts at: 3338 3338 Size: 6013 MfeI C'AATT_G Cuts at: 3192 3612 3192 Size: 420 5593 MluI A'CGCG_T Cuts at: 5889 5889 Size: 6013 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 3109 5127 5311 1305 Size: 1804 2018 184 2007 Fragments arranged by size: 2018 2007 1804 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 4191 Fragments arranged by size: 4191 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2522 3971 4330 4489 518 Size: 648 1356 1449 359 159 2042 Fragments arranged by size: 2042 1449 1356 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3079 3429 4106 5254 5499 1606 Size: 1473 350 677 1148 245 2120 Fragments arranged by size: 2120 1473 1148 677 350 245 NcoI C'CATG_G Cuts at: 513 1065 2022 513 Size: 552 957 4504 Fragments arranged by size: 4504 957 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 6013 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6013 NotI GC'GGCC_GC Cuts at: 3460 3460 Size: 6013 NspI r_CATG'y Cuts at: 1132 1229 3371 4916 1132 Size: 97 2142 1545 2229 Fragments arranged by size: 2229 2142 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 6013 PciI A'CATG_T Cuts at: 4912 4912 Size: 6013 PflMI CCAn_nnn'nTGG Cuts at: 1108 2764 3046 1108 Size: 1656 282 4075 Fragments arranged by size: 4075 1656 282 PfoI T'CCnGG_A Cuts at: 3219 3219 Size: 6013 PmeI GTTT'AAAC Cuts at: 3317 3317 Size: 6013 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2011 2043 4082 4114 5595 5627 2011 Size: 32 2039 32 1481 32 2397 Fragments arranged by size: 2397 2039 1481 32 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6013 PsiI TTA'TAA Cuts at: 3583 3583 Size: 6013 PspOMI G'GGCC_C Cuts at: 3067 3067 Size: 6013 PstI C_TGCA'G Cuts at: 830 3365 830 Size: 2535 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6013 PvuII CAG'CTG Cuts at: 3079 3079 Size: 6013 SalI G'TCGA_C Cuts at: 1936 3355 1936 Size: 1419 4594 SbfI CC_TGCA'GG Cuts at: 3365 3365 Size: 6013 ScaI AGT'ACT Cuts at: 4261 5973 4261 Size: 1712 4301 SfcI C'TryA_G Cuts at: 826 1045 2041 3361 4496 5177 5368 826 Size: 219 996 1320 1135 681 191 1471 Fragments arranged by size: 1471 1320 1135 996 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6013 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6013 SmaI CCC'GGG Cuts at: 1872 3340 1872 Size: 1468 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2058 4117 5018 5280 820 Size: 197 926 115 2059 901 262 1553 Fragments arranged by size: 2059 1553 926 901 262 197 115 SnaBI TAC'GTA Cuts at: 493 3310 3804 493 Size: 2817 494 2702 Fragments arranged by size: 2817 2702 494 SpeI A'CTAG_T Cuts at: 152 152 Size: 6013 SphI G_CATG'C Cuts at: 1132 3371 1132 Size: 2239 3774 SspI AAT'ATT Cuts at: 5 52 3937 5 Size: 47 3885 2081 Fragments arranged by size: 3885 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 6013 StyI C'CwwG_G Cuts at: 513 1065 2022 2220 2229 2452 2547 2619 3272 Size: 552 957 198 9 223 95 72 653 Cuts at: 3272 3452 513 Size: 180 3074 Fragments arranged by size: 3074 957 653 552 223 198 180 95 72 9 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 4040 4057 4210 4395 4840 325 Size: 1255 2460 17 153 185 445 1498 Fragments arranged by size: 2460 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 4259 5971 96 Size: 274 80 33 51 1443 2282 1712 138 Fragments arranged by size: 2282 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5973 6005 5973 Size: 32 5981 Tth111I GACn'n_nGTC Cuts at: 1316 2375 1316 Size: 1059 4954 XbaI T'CTAG_A Cuts at: 3349 3349 Size: 6013 XhoI C'TCGA_G Cuts at: 1943 2058 1943 Size: 115 5898 XmaI C'CCGG_G Cuts at: 1870 3338 1870 Size: 1468 4545 XmnI GAAnn'nnTTC Cuts at: 2614 4142 2614 Size: 1528 4485 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3821 276 Size: 53 83 186 936 2287 2468 Fragments arranged by size: 2468 2287 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI Bpu10I BsiWI BstXI BstZ17I EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI