Result of FASTA (omim) for pFN21ASDA0529
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0529, 952 aa
  1>>>pF1KSDA0529 952 - 952 aa - 952 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4868+/-0.000459; mu= 15.6161+/- 0.028
 mean_var=106.1345+/-20.725, 0's: 0 Z-trim(112.4): 244  B-trim: 0 in 0/54
 Lambda= 0.124493
 statistics sampled from 20983 (21246) to 20983 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.249), width:  16
 Scan time:  9.140

The best scores are:                                      opt bits E(85289)
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 6535 1185.6       0
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 4983 906.8       0
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 4983 906.8       0
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 4983 906.8       0
XP_005269318 (OMIM: 604731) PREDICTED: ubiquitin c ( 648) 4438 808.8       0
XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775) 3505 641.3 5.6e-183
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 1642 306.7 3.6e-82
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 1639 306.2   5e-82
NP_001239008 (OMIM: 604731) ubiquitin carboxyl-ter ( 235) 1554 290.6 6.5e-78
XP_005272731 (OMIM: 300050) PREDICTED: ubiquitin c ( 690) 1461 274.1 1.7e-72
XP_011542290 (OMIM: 300050) PREDICTED: ubiquitin c ( 690) 1461 274.1 1.7e-72
NP_004642 (OMIM: 300050) ubiquitin carboxyl-termin ( 963) 1461 274.2 2.2e-72
NP_001238806 (OMIM: 603486) ubiquitin carboxyl-ter ( 313) 1135 215.4 3.7e-55
XP_016880722 (OMIM: 607740) PREDICTED: ubiquitin c (1558) 1124 213.8 5.3e-54
XP_011523678 (OMIM: 607740) PREDICTED: ubiquitin c (1601) 1124 213.9 5.5e-54
NP_115971 (OMIM: 607740) ubiquitin carboxyl-termin (1604) 1124 213.9 5.5e-54
XP_011523674 (OMIM: 607740) PREDICTED: ubiquitin c (1620) 1124 213.9 5.5e-54
XP_016880723 (OMIM: 607740) PREDICTED: ubiquitin c (1288) 1111 211.5 2.3e-53
XP_011523681 (OMIM: 607740) PREDICTED: ubiquitin c (1327) 1111 211.5 2.4e-53
XP_011523680 (OMIM: 607740) PREDICTED: ubiquitin c (1572) 1111 211.5 2.7e-53
XP_011523677 (OMIM: 607740) PREDICTED: ubiquitin c (1608) 1111 211.5 2.8e-53
XP_011523676 (OMIM: 607740) PREDICTED: ubiquitin c (1615) 1111 211.5 2.8e-53
XP_011523675 (OMIM: 607740) PREDICTED: ubiquitin c (1618) 1111 211.5 2.8e-53
XP_011523673 (OMIM: 607740) PREDICTED: ubiquitin c (1634) 1111 211.5 2.8e-53
XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin c (1384) 1108 210.9 3.6e-53
NP_001291213 (OMIM: 604334) ubiquitin carboxyl-ter (1406) 1108 210.9 3.6e-53
XP_011522353 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522358 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522355 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_016880779 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522352 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
NP_004496 (OMIM: 604334) ubiquitin carboxyl-termin (1406) 1108 210.9 3.6e-53
XP_011522356 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522357 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 1108 210.9 3.6e-53
XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031)  908 174.9 1.8e-42
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786)  902 173.8 3.1e-42
XP_016861124 (OMIM: 614471) PREDICTED: ubiquitin c ( 871)  881 170.0 4.6e-41
XP_005264888 (OMIM: 614471) PREDICTED: ubiquitin c (1268)  881 170.1 6.2e-41
XP_016861123 (OMIM: 614471) PREDICTED: ubiquitin c (1270)  881 170.1 6.2e-41
XP_016861122 (OMIM: 614471) PREDICTED: ubiquitin c (1281)  881 170.1 6.3e-41
XP_016861121 (OMIM: 614471) PREDICTED: ubiquitin c (1283)  881 170.1 6.3e-41
XP_016861120 (OMIM: 614471) PREDICTED: ubiquitin c (1283)  881 170.1 6.3e-41
XP_016861119 (OMIM: 614471) PREDICTED: ubiquitin c (1285)  881 170.1 6.3e-41
XP_016861118 (OMIM: 614471) PREDICTED: ubiquitin c (1303)  881 170.2 6.4e-41
XP_016861117 (OMIM: 614471) PREDICTED: ubiquitin c (1305)  881 170.2 6.4e-41
XP_016861116 (OMIM: 614471) PREDICTED: ubiquitin c (1307)  881 170.2 6.4e-41
XP_016861115 (OMIM: 614471) PREDICTED: ubiquitin c (1318)  881 170.2 6.4e-41
NP_006668 (OMIM: 614471) ubiquitin carboxyl-termin (1318)  881 170.2 6.4e-41
XP_016861114 (OMIM: 614471) PREDICTED: ubiquitin c (1320)  881 170.2 6.4e-41


>>NP_006304 (OMIM: 604731) ubiquitin carboxyl-terminal h  (952 aa)
 initn: 6535 init1: 6535 opt: 6535  Z-score: 6345.8  bits: 1185.6 E(85289):    0
Smith-Waterman score: 6535; 100.0% identity (100.0% similar) in 952 aa overlap (1-952:1-952)

               10        20        30        40        50        60
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD AYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD NPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD ECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTAL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD SALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD CLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 CLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD SLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDND
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD SENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD ALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYC
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD PNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPN
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD AGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLF
              850       860       870       880       890       900

              910       920       930       940       950  
pF1KSD YQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
              910       920       930       940       950  

>>XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin carbo  (860 aa)
 initn: 5684 init1: 4983 opt: 4983  Z-score: 4840.0  bits: 906.8 E(85289):    0
Smith-Waterman score: 5630; 96.6% identity (96.6% similar) in 860 aa overlap (122-952:1-860)

             100       110       120       130       140       150 
pF1KSD LPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRR
                                     ::::::::::::::::::::::::::::::
XP_016                               MFVKHCKVEVYLTELKLCENGNMNNVVTRR
                                             10        20        30

             160       170       180       190       200       210 
pF1KSD FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI
               40        50        60        70        80        90

             220                                    230       240  
pF1KSD EQKNEDGTWPRGPSTP-----------------------------NVKNSNYCLPSYTAY
       ::::::::::::::::                             :::::::::::::::
XP_016 EQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAY
              100       110       120       130       140       150

            250       260       270       280       290       300  
pF1KSD KNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP
              160       170       180       190       200       210

            310       320       330       340       350       360  
pF1KSD LGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDG
              220       230       240       250       260       270

            370       380       390       400       410       420  
pF1KSD LHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPEC
              280       290       300       310       320       330

            430       440       450       460       470       480  
pF1KSD AKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSA
              340       350       360       370       380       390

            490       500       510       520       530       540  
pF1KSD LSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCL
              400       410       420       430       440       450

            550       560       570       580       590       600  
pF1KSD REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSL
              460       470       480       490       500       510

            610       620       630       640       650       660  
pF1KSD HCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
              520       530       540       550       560       570

            670       680       690       700       710       720  
pF1KSD NGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL
              580       590       600       610       620       630

            730       740       750       760       770       780  
pF1KSD DWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPN
              640       650       660       670       680       690

            790       800       810       820       830       840  
pF1KSD CKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG
              700       710       720       730       740       750

            850       860       870       880       890       900  
pF1KSD PCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
              760       770       780       790       800       810

            910       920       930       940       950  
pF1KSD RQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
              820       830       840       850       860

>>XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin carbo  (860 aa)
 initn: 5684 init1: 4983 opt: 4983  Z-score: 4840.0  bits: 906.8 E(85289):    0
Smith-Waterman score: 5630; 96.6% identity (96.6% similar) in 860 aa overlap (122-952:1-860)

             100       110       120       130       140       150 
pF1KSD LPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRR
                                     ::::::::::::::::::::::::::::::
XP_016                               MFVKHCKVEVYLTELKLCENGNMNNVVTRR
                                             10        20        30

             160       170       180       190       200       210 
pF1KSD FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI
               40        50        60        70        80        90

             220                                    230       240  
pF1KSD EQKNEDGTWPRGPSTP-----------------------------NVKNSNYCLPSYTAY
       ::::::::::::::::                             :::::::::::::::
XP_016 EQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAY
              100       110       120       130       140       150

            250       260       270       280       290       300  
pF1KSD KNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNP
              160       170       180       190       200       210

            310       320       330       340       350       360  
pF1KSD LGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDG
              220       230       240       250       260       270

            370       380       390       400       410       420  
pF1KSD LHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPEC
              280       290       300       310       320       330

            430       440       450       460       470       480  
pF1KSD AKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSA
              340       350       360       370       380       390

            490       500       510       520       530       540  
pF1KSD LSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCL
              400       410       420       430       440       450

            550       560       570       580       590       600  
pF1KSD REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEETEGSL
              460       470       480       490       500       510

            610       620       630       640       650       660  
pF1KSD HCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE
              520       530       540       550       560       570

            670       680       690       700       710       720  
pF1KSD NGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL
              580       590       600       610       620       630

            730       740       750       760       770       780  
pF1KSD DWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPN
              640       650       660       670       680       690

            790       800       810       820       830       840  
pF1KSD CKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAG
              700       710       720       730       740       750

            850       860       870       880       890       900  
pF1KSD PCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQ
              760       770       780       790       800       810

            910       920       930       940       950  
pF1KSD RQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN
              820       830       840       850       860

>>NP_001239007 (OMIM: 604731) ubiquitin carboxyl-termina  (981 aa)
 initn: 6521 init1: 4983 opt: 4983  Z-score: 4839.2  bits: 906.8 E(85289):    0
Smith-Waterman score: 6467; 97.0% identity (97.0% similar) in 981 aa overlap (1-952:1-981)

               10        20        30        40        50        60
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
              130       140       150       160       170       180

              190       200       210       220                    
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTP-------------
       :::::::::::::::::::::::::::::::::::::::::::::::             
NP_001 NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPK
              190       200       210       220       230       240

                       230       240       250       260       270 
pF1KSD ----------------NVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFM
                       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFM
              250       260       270       280       290       300

             280       290       300       310       320       330 
pF1KSD NSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPR
              310       320       330       340       350       360

             340       350       360       370       380       390 
pF1KSD AFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAE
              370       380       390       400       410       420

             400       410       420       430       440       450 
pF1KSD EAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYL
              430       440       450       460       470       480

             460       470       480       490       500       510 
pF1KSD VRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENL
              490       500       510       520       530       540

             520       530       540       550       560       570 
pF1KSD SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRN
              550       560       570       580       590       600

             580       590       600       610       620       630 
pF1KSD NTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDE
              610       620       630       640       650       660

             640       650       660       670       680       690 
pF1KSD PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLG
              670       680       690       700       710       720

             700       710       720       730       740       750 
pF1KSD NTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKP
              730       740       750       760       770       780

             760       770       780       790       800       810 
pF1KSD PKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY
              790       800       810       820       830       840

             820       830       840       850       860       870 
pF1KSD SRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKD
              850       860       870       880       890       900

             880       890       900       910       920       930 
pF1KSD DGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLE
              910       920       930       940       950       960

             940       950  
pF1KSD SDEDSNDNDNDIENENCMHTN
       :::::::::::::::::::::
NP_001 SDEDSNDNDNDIENENCMHTN
              970       980 

>>XP_005269318 (OMIM: 604731) PREDICTED: ubiquitin carbo  (648 aa)
 initn: 4438 init1: 4438 opt: 4438  Z-score: 4312.8  bits: 808.8 E(85289):    0
Smith-Waterman score: 4438; 100.0% identity (100.0% similar) in 648 aa overlap (305-952:1-648)

          280       290       300       310       320       330    
pF1KSD IQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFK
                                     ::::::::::::::::::::::::::::::
XP_005                               MRGEIAKSYAELIKQMWSGKFSYVTPRAFK
                                             10        20        30

          340       350       360       370       380       390    
pF1KSD TQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAW
               40        50        60        70        80        90

          400       410       420       430       440       450    
pF1KSD ENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRM
              100       110       120       130       140       150

          460       470       480       490       500       510    
pF1KSD DPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENLSSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENLSSI
              160       170       180       190       200       210

          520       530       540       550       560       570    
pF1KSD MERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTE
              220       230       240       250       260       270

          580       590       600       610       620       630    
pF1KSD DKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDD
              280       290       300       310       320       330

          640       650       660       670       680       690    
pF1KSD ESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTD
              340       350       360       370       380       390

          700       710       720       730       740       750    
pF1KSD INYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 INYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKK
              400       410       420       430       440       450

          760       770       780       790       800       810    
pF1KSD PFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRY
              460       470       480       490       500       510

          820       830       840       850       860       870    
pF1KSD MRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGK
              520       530       540       550       560       570

          880       890       900       910       920       930    
pF1KSD WYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDE
              580       590       600       610       620       630

          940       950  
pF1KSD DSNDNDNDIENENCMHTN
       ::::::::::::::::::
XP_005 DSNDNDNDIENENCMHTN
              640        

>>XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin carbo  (775 aa)
 initn: 5081 init1: 3505 opt: 3505  Z-score: 3406.0  bits: 641.3 E(85289): 5.6e-183
Smith-Waterman score: 4989; 96.0% identity (96.1% similar) in 770 aa overlap (1-741:1-770)

               10        20        30        40        50        60
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
              130       140       150       160       170       180

              190       200       210       220                    
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTP-------------
       :::::::::::::::::::::::::::::::::::::::::::::::             
XP_006 NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPK
              190       200       210       220       230       240

                       230       240       250       260       270 
pF1KSD ----------------NVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFM
                       ::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFM
              250       260       270       280       290       300

             280       290       300       310       320       330 
pF1KSD NSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPR
              310       320       330       340       350       360

             340       350       360       370       380       390 
pF1KSD AFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAE
              370       380       390       400       410       420

             400       410       420       430       440       450 
pF1KSD EAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYL
              430       440       450       460       470       480

             460       470       480       490       500       510 
pF1KSD VRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENL
              490       500       510       520       530       540

             520       530       540       550       560       570 
pF1KSD SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRN
              550       560       570       580       590       600

             580       590       600       610       620       630 
pF1KSD NTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NTEDKLYNLLLLRMCRYVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDE
              610       620       630       640       650       660

             640       650       660       670       680       690 
pF1KSD PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLG
              670       680       690       700       710       720

             700       710       720       730       740       750 
pF1KSD NTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKP
       :::::::::::::::::::::::::::::::::::::::::::::::: .          
XP_006 NTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEKYFSLGL     
              730       740       750       760       770          

             760       770       780       790       800       810 
pF1KSD PKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSY

>>NP_003354 (OMIM: 603486) ubiquitin carboxyl-terminal h  (963 aa)
 initn: 3610 init1: 1550 opt: 1642  Z-score: 1596.3  bits: 306.7 E(85289): 3.6e-82
Smith-Waterman score: 3644; 58.1% identity (77.1% similar) in 977 aa overlap (8-940:12-956)

                   10        20        30        40        50      
pF1KSD     MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMG
                  : .::.:... :..:.:..:  :::.:::::::::::::::::: :..:
NP_003 MAEGGGCRERPDAETQKSELGPLMRTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVG
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KSD DQNVYPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARK
       ..:..:::::::::..: ..:.:::::::::::.:.:::.::::..::  .:::.::.::
NP_003 EHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRK
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KSD VVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKE
       :::.:.::::::::::: :::::::.. .::.. .::::::: :::::.::.:.:: :.:
NP_003 VVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERE
              130       140       150       160       170       180

        180       190       200       210       220                
pF1KSD TRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPR---------GPS--
       :::::::::::.: :.: :.:.:::::::::::::: .::::::::         .::  
NP_003 TRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEPQNEDGTWPRQTLQSKSSTAPSRN
              190       200       210       220       230       240

            230       240                               250        
pF1KSD ---TPNVKNSNYCLPSYTAYKN------------------------YDYSEPGRNNEQPG
          .:. . : :   : .   :                        :. .::  .. :::
NP_003 FTTSPKSSASPYSSVSASLIANGDSTSTCGMHSSGVSRGGSGFSASYNCQEPPSSHIQPG
              250       260       270       280       290       300

      260       270       280       290       300       310        
pF1KSD LCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIK
       ::::.:::::::::::.:::::: :::.:::.:.:. :.: ::::::.::::..::::::
NP_003 LCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIK
              310       320       330       340       350       360

      320       330       340       350       360       370        
pF1KSD QMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQL
       :::::. ..:.:: ::::::::::::::::::: :::::::::::::::::..::::..:
NP_003 QMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLEL
              370       380       390       400       410       420

      380       390       400       410       420       430        
pF1KSD KDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLP
       :::.:::: :::.::::::  ::::.::: ::::::::::::::::.:::::::::::::
NP_003 KDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLP
              430       440       450       460       470       480

      440       450       460       470       480       490        
pF1KSD LPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYN
       ::.::.:..::.::  ::  .: ::.:.:: .: . ::: ::: :::: :..:.:.:.::
NP_003 LPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIAAENMVVADVYN
              490       500       510       520       530       540

      500       510       520       530       540       550        
pF1KSD HRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSS
       ::::.:: :::.:. :: ::::.:.:.  . .. .: : .:: .::.  . : :  ..:.
NP_003 HRFHKIFQMDEGLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTS-SASA
              550       560       570       580       590          

      560       570        580       590       600         610     
pF1KSD LFGQPFLMAVPRNN-TEDKLYNLLLLRMCRYVKISTETEETEGSLH--CCKDQNINGNGP
       :.:::.:..::... : ..::. .  :. ::::     :   . :.   :   : . :. 
NP_003 LYGQPLLLSVPKHKLTLESLYQAVCDRISRYVKQPLPDEFGSSPLEPGAC---NGSRNSC
     600       610       620       630       640          650      

         620       630       640       650       660       670     
pF1KSD NGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQL
       .:  ::    ::: .:      . .:  ::.:.: .::  :.:  ::.   :.   ::: 
NP_003 EGEDEE----EMEHQE------EGKEQLSETEGS-GEDEPGND-PSET---TQKKIKGQP
        660                 670       680         690          700 

         680        690       700       710       720       730    
pF1KSD TGHKKRLFTFQF-NNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFD
           ::::::.. :. :..::: .  :        . :.:. :: ::.::: . .. :.:
NP_003 C--PKRLFTFSLVNSYGTADINSLAAD-------GKLLKLNSRSTLAMDWDSETRRLYYD
               710       720              730       740       750  

          740        750       760       770       780       790   
pF1KSD ENAAEDFEKHESV-EYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKL
       :. .: .::: :. . .  ::  : :.:::::::: : :: .:::::::::.:::::::.
NP_003 EQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKF
            760       770       780       790       800       810  

           800       810       820       830       840       850   
pF1KSD DLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSN
       :::::: .::::::::::.:: ::::::.:.:::  :.::::. : .: :  :.::::::
NP_003 DLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSN
            820       830       840       850       860       870  

           860       870       880       890       900       910   
pF1KSD HYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFF
       :::.:: :::::.:::: .:::::::::.:: :::::::.::::::::::.:      :.
NP_003 HYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD----EFY
            880       890       900       910       920            

           920        930       940       950  
pF1KSD PLDRETKGASAATGI-PLESDEDSNDNDNDIENENCMHTN
            ....:.  :  :  :..  .:..            
NP_003 KTPSLSSSGSSDGGTRPSSSQQGFGDDEACSMDTN     
      930       940       950       960        

>>NP_955475 (OMIM: 603486) ubiquitin carboxyl-terminal h  (916 aa)
 initn: 3610 init1: 1550 opt: 1639  Z-score: 1593.7  bits: 306.2 E(85289): 5e-82
Smith-Waterman score: 3698; 59.8% identity (79.6% similar) in 950 aa overlap (1-940:1-909)

                   10        20        30        40        50      
pF1KSD MAEGGAA----DLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMG
       :::::.     : .::.:... :..:.:..:  :::.:::::::::::::::::: :..:
NP_955 MAEGGGCRERPDAETQKSELGPLMRTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVG
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KSD DQNVYPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARK
       ..:..:::::::::..: ..:.:::::::::::.:.:::.::::..::  .:::.::.::
NP_955 EHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRK
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KSD VVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKE
       :::.:.::::::::::: :::::::.. .::.. .::::::: :::::.::.:.:: :.:
NP_955 VVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERE
              130       140       150       160       170       180

        180       190       200       210       220       230      
pF1KSD TRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCL
       :::::::::::.: :.: :.:.:::::::::::::: .::::::::  .: . ..:..  
NP_955 TRLWNKYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEPQNEDGTWPR--QTLQSNGSGFS-
              190       200       210       220         230        

        240       250       260       270       280       290      
pF1KSD PSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEE
              .:. .::  .. :::::::.:::::::::::.:::::: :::.:::.:.:. :
NP_955 ------ASYNCQEPPSSHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAE
             240       250       260       270       280       290 

        300       310       320       330       340       350      
pF1KSD LNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELL
       .: ::::::.::::..:::::::::::. ..:.:: ::::::::::::::::::: ::::
NP_955 INRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELL
             300       310       320       330       340       350 

        360       370       380       390       400       410      
pF1KSD AFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKST
       :::::::::::::..::::..::::.:::: :::.::::::  ::::.::: ::::::::
NP_955 AFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST
             360       370       380       390       400       410 

        420       430       440       450       460       470      
pF1KSD LVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDL
       ::::::::.:::::::::::::::.::.:..::.::  ::  .: ::.:.:: .: . ::
NP_955 LVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDL
             420       430       440       450       460       470 

        480       490       500       510       520       530      
pF1KSD CTALSALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHV
       : ::: :::: :..:.:.:.::::::.:: :::.:. :: ::::.:.:.  . .. .: :
NP_955 CEALSRLSGIAAENMVVADVYNHRFHKIFQMDEGLNHIMPRDDIFVYEVCSTSVDGSECV
             480       490       500       510       520       530 

        540       550       560       570        580       590     
pF1KSD IIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNN-TEDKLYNLLLLRMCRYVKISTET
        .:: .::.  . : :  ..:.:.:::.:..::... : ..::. .  :. ::::     
NP_955 TLPVYFRERKSRPSSTS-SASALYGQPLLLSVPKHKLTLESLYQAVCDRISRYVKQPLPD
             540        550       560       570       580       590

         600         610       620       630       640       650   
pF1KSD EETEGSLH--CCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSED
       :   . :.   :   : . :. .:  ::    ::: .:      . .:  ::.:.: .::
NP_955 EFGSSPLEPGAC---NGSRNSCEGEDEE----EMEHQE------EGKEQLSETEGS-GED
              600          610           620             630       

           660       670       680        690       700       710  
pF1KSD SVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQF-NNLGNTDINYIKDDTRHIRFDDRQL
         :.:  ::.   :.   :::     ::::::.. :. :..::: .  :        . :
NP_955 EPGND-PSET---TQKKIKGQ--PCPKRLFTFSLVNSYGTADINSLAAD-------GKLL
        640           650         660       670              680   

            720       730       740        750       760       770 
pF1KSD RLDERSFLALDWDPDLKKRYFDENAAEDFEKHESV-EYKPPKKPFVKLKDCIELFTTKEK
       .:. :: ::.::: . .. :.::. .: .::: :. . .  ::  : :.:::::::: : 
NP_955 KLNSRSTLAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMET
           690       700       710       720       730       740   

             780       790       800       810       820       830 
pF1KSD LGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLD
       :: .:::::::::.:::::::.:::::: .::::::::::.:: ::::::.:.:::  :.
NP_955 LGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLN
           750       760       770       780       790       800   

             840       850       860       870       880       890 
pF1KSD MSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQI
       ::::. : .: :  :.:::::::::.:: :::::.:::: .:::::::::.:: ::::::
NP_955 MSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQI
           810       820       830       840       850       860   

             900       910       920        930       940       950
pF1KSD VSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGI-PLESDEDSNDNDNDIENENCMH
       :.::::::::::.:      :.     ....:.  :  :  :..  .:..          
NP_955 VTKAAYVLFYQRRDD----EFYKTPSLSSSGSSDGGTRPSSSQQGFGDDEACSMDTN   
           870           880       890       900       910         

         
pF1KSD TN

>>NP_001239008 (OMIM: 604731) ubiquitin carboxyl-termina  (235 aa)
 initn: 1552 init1: 1552 opt: 1554  Z-score: 1519.7  bits: 290.6 E(85289): 6.5e-78
Smith-Waterman score: 1554; 97.0% identity (97.9% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KSD MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYT
       :::::::::::::::::::::::::::::::::::::::::::::::.    . :     
NP_001 NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKKPLEQSC     
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KSD AYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFD

>>XP_005272731 (OMIM: 300050) PREDICTED: ubiquitin carbo  (690 aa)
 initn: 2176 init1: 1308 opt: 1461  Z-score: 1422.7  bits: 274.1 E(85289): 1.7e-72
Smith-Waterman score: 2300; 49.6% identity (72.3% similar) in 736 aa overlap (211-933:1-685)

              190       200       210       220       230       240
pF1KSD NKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPNVKNSNYCLPSYT
                                     .: ...:::::   .  .: :.:.      
XP_005                               METRKKDGTWP--SAQLHVMNNNM------
                                             10          20        

              250       260       270       280       290       300
pF1KSD AYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFD
       . .. :..  :    :::.:::.:::::::::::.:::::.: :::::::. : ::::: 
XP_005 SEEDEDFK--G----QPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFR
             30              40        50        60        70      

              310       320       330       340       350       360
pF1KSD NPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLL
       :::::.::::..::.:.:: :::.   ..:..::..::.:: :: ::::.: ::::.:::
XP_005 NPLGMKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLL
         80        90       100       110       120       130      

              370       380       390       400       410       420
pF1KSD DGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCP
       :::::::::..:: :..: :: ::::. ::.:::.:: .::::.::: ::::::::::::
XP_005 DGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCP
        140       150       160       170       180       190      

              430       440       450       460       470       480
pF1KSD ECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTAL
       .:...::::::::::..:::....:.:::... :::  :: :...:::: :.: :::.::
XP_005 DCGNVSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVAL
        200       210       220       230       240       250      

              490       500       510       520         530        
pF1KSD SALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEIN--INRTEDT-EHVI
       :  .::  ..:.:.:...:::.... ..: ::::..::::.:.:..  :.  : . : ..
XP_005 SKHTGISPERMMVADVFSHRFYKLYQLEEPLSSILDRDDIFVYEVSGRIEAIEGSREDIV
        260       270       280       290       300       310      

       540       550        560       570        580       590     
pF1KSD IPVCLREKFRHSSYTH-HTGSSLFGQPFLMAVPRNN-TEDKLYNLLLLRMCRYVKISTET
       .:: :::.    .:.. . :  :::.:.:..:::.  : . :::.:. :. :::   .  
XP_005 VPVYLRERTPARDYNNSYYGLMLFGHPLLVSVPRDRFTWEGLYNVLMYRLSRYVTKPNSD
        320       330       340       350       360       370      

         600       610       620       630       640       650     
pF1KSD EETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSV
       .: .:.                  :. .  : . : :   .. . . :   :  :.  : 
XP_005 DEDDGD------------------EKEDDEEDKDDVPGPSTGGSLRDP---EPEQAGPSS
        380                         390       400          410     

         660       670         680         690       700       710 
pF1KSD GGDNDSENGLCTEDTCKG--QLTGHKKR--LFTFQFNNLGNTDINYIKDDTRHIRFDDRQ
       :  :     :   :.: :  :   ...:  :::.:  : ..:.    . .  : .     
XP_005 GVTNRCPFLL---DNCLGTSQWPPRRRRKQLFTLQTVNSNGTSDRTTSPEEVHAQ-----
         420          430       440       450       460            

             720       730       740       750       760       770 
pF1KSD LRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEK
              ..:.::.:..::::.::  :: . ::. : :   : : :.:..::::::: : 
XP_005 ------PYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKAP-VRLQECIELFTTVET
             470       480       490       500        510       520

             780       790       800       810       820       830 
pF1KSD LGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLD
       :  :.:::::.::.:: :::::::: :: .:..:::::::... :.::::::.::: :::
XP_005 LEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRDLD
              530       540       550       560       570       580

             840           850       860       870       880       
pF1KSD MSEFLINPN--AGPC--RYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTAS
       .:::.:.:.  ..:   .:.:::::::::::  ::::.:: :::.:.:.::::.::: ..
XP_005 FSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVN
              590       600       610       620       630       640

       890       900       910       920       930       940       
pF1KSD EDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENEN
       :.:: :::::::::::::. .   . :       :: : . :  :.              
XP_005 ENQIESKAAYVLFYQRQDV-ARRLLSPAGSSGAPASPACSSPPSSEFMDVN         
              650        660       670       680       690         

       950  
pF1KSD CMHTN




952 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:58:00 2016 done: Thu Nov  3 01:58:02 2016
 Total Scan time:  9.140 Total Display time:  0.290

Function used was FASTA [36.3.4 Apr, 2011]
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