Result of FASTA (omim) for pFN21ASDA0272
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0272, 729 aa
  1>>>pF1KSDA0272 729 - 729 aa - 729 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0533+/-0.000387; mu= 3.0964+/- 0.024
 mean_var=189.5538+/-38.466, 0's: 0 Z-trim(119.4): 55  B-trim: 496 in 1/53
 Lambda= 0.093155
 statistics sampled from 33348 (33404) to 33348 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.392), width:  16
 Scan time:  9.720

The best scores are:                                      opt bits E(85289)
NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl ( 729) 4825 661.2 4.1e-189
XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiq ( 737) 4683 642.1 2.3e-183
XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiq ( 752) 4176 574.0 7.5e-163
XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiq ( 714) 4078 560.8 6.6e-159
XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiq ( 711) 3205 443.5 1.4e-123
XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiq ( 734) 2556 356.3 2.6e-97
NP_001186192 (OMIM: 610667) ubiquitin carboxyl-ter ( 316)  583 90.9 8.3e-18
NP_001186191 (OMIM: 610667) ubiquitin carboxyl-ter ( 326)  583 90.9 8.5e-18
NP_001186190 (OMIM: 610667) ubiquitin carboxyl-ter ( 328)  583 90.9 8.6e-18
XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin c ( 393)  583 91.0   1e-17
NP_057068 (OMIM: 610667) ubiquitin carboxyl-termin ( 329)  572 89.5 2.4e-17
XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin c ( 384)  572 89.5 2.7e-17
XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin c ( 394)  572 89.5 2.8e-17
XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin c ( 394)  572 89.5 2.8e-17
XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin c ( 348)  510 81.1 8.1e-15
XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin c ( 319)  503 80.2 1.4e-14
XP_005245304 (OMIM: 610667) PREDICTED: ubiquitin c ( 320)  492 78.7   4e-14
XP_006711432 (OMIM: 610667) PREDICTED: ubiquitin c ( 410)  493 78.9 4.5e-14
XP_016856919 (OMIM: 610667) PREDICTED: ubiquitin c ( 420)  493 78.9 4.6e-14
XP_016856918 (OMIM: 610667) PREDICTED: ubiquitin c ( 420)  493 78.9 4.6e-14
XP_005245301 (OMIM: 610667) PREDICTED: ubiquitin c ( 422)  493 78.9 4.6e-14
XP_006711431 (OMIM: 610667) PREDICTED: ubiquitin c ( 411)  491 78.6 5.5e-14
XP_006711430 (OMIM: 610667) PREDICTED: ubiquitin c ( 421)  491 78.6 5.6e-14
XP_011507906 (OMIM: 610667) PREDICTED: ubiquitin c ( 421)  491 78.6 5.6e-14
XP_006711429 (OMIM: 610667) PREDICTED: ubiquitin c ( 423)  491 78.6 5.6e-14
XP_016856926 (OMIM: 610667) PREDICTED: ubiquitin c ( 291)  457 74.0 9.7e-13
XP_016856925 (OMIM: 610667) PREDICTED: ubiquitin c ( 292)  446 72.5 2.7e-12
XP_016856923 (OMIM: 610667) PREDICTED: ubiquitin c ( 375)  420 69.1 3.8e-11
XP_006711433 (OMIM: 610667) PREDICTED: ubiquitin c ( 376)  418 68.8 4.6e-11
XP_011507909 (OMIM: 610667) PREDICTED: ubiquitin c ( 347)  411 67.8 8.2e-11
XP_011507911 (OMIM: 610667) PREDICTED: ubiquitin c ( 319)  365 61.6 5.5e-09
XP_011507910 (OMIM: 610667) PREDICTED: ubiquitin c ( 319)  365 61.6 5.5e-09
XP_016856933 (OMIM: 610667) PREDICTED: ubiquitin c ( 192)  319 55.3 2.6e-07
XP_016856931 (OMIM: 610667) PREDICTED: ubiquitin c ( 204)  319 55.4 2.8e-07
XP_016856930 (OMIM: 610667) PREDICTED: ubiquitin c ( 204)  319 55.4 2.8e-07
XP_016856932 (OMIM: 610667) PREDICTED: ubiquitin c ( 203)  308 53.9 7.7e-07
XP_016856929 (OMIM: 610667) PREDICTED: ubiquitin c ( 205)  308 53.9 7.7e-07
XP_005245306 (OMIM: 610667) PREDICTED: ubiquitin c ( 205)  308 53.9 7.7e-07
NP_005993 (OMIM: 603090) ubiquitin carboxyl-termin ( 230)  243 45.2 0.00036
XP_016856928 (OMIM: 610667) PREDICTED: ubiquitin c ( 231)  229 43.3  0.0013
XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin c ( 226)  228 43.1  0.0014
XP_016856927 (OMIM: 610667) PREDICTED: ubiquitin c ( 232)  227 43.0  0.0016
XP_006711434 (OMIM: 610667) PREDICTED: ubiquitin c ( 232)  227 43.0  0.0016
NP_001257881 (OMIM: 603090) ubiquitin carboxyl-ter ( 194)  209 40.6  0.0075


>>NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl-ter  (729 aa)
 initn: 4825 init1: 4825 opt: 4825  Z-score: 3516.3  bits: 661.2 E(85289): 4.1e-189
Smith-Waterman score: 4825; 100.0% identity (100.0% similar) in 729 aa overlap (1-729:1-729)

               10        20        30        40        50        60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
              670       680       690       700       710       720

                
pF1KSD SRPYKAKRQ
       :::::::::
NP_004 SRPYKAKRQ
                

>>XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiquiti  (737 aa)
 initn: 4709 init1: 4072 opt: 4683  Z-score: 3413.0  bits: 642.1 E(85289): 2.3e-183
Smith-Waterman score: 4688; 96.9% identity (97.7% similar) in 739 aa overlap (1-729:1-737)

               10        20        30        40        50        60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
              550       560       570       580       590       600

              610                 620       630       640       650
pF1KSD KEVVEATDSREKTGMV----------RPGEPLSGEKYSPKELLALLKCVEAEIANYEACL
       :::::::::::::::.          :: .  ..  .  .::::::::::::::::::::
XP_011 KEVVEATDSREKTGMLPIARGALLLARPDQRCNAGFW--QELLALLKCVEAEIANYEACL
              610       620       630         640       650        

              660       670       680       690       700       710
pF1KSD KEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLH
      660       670       680       690       700       710        

              720         
pF1KSD KQRKPDRRKRSRPYKAKRQ
       :::::::::::::::::::
XP_011 KQRKPDRRKRSRPYKAKRQ
      720       730       

>>XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiquiti  (752 aa)
 initn: 4176 init1: 4176 opt: 4176  Z-score: 3044.7  bits: 574.0 E(85289): 7.5e-163
Smith-Waterman score: 4769; 96.9% identity (96.9% similar) in 752 aa overlap (1-729:1-752)

               10        20        30        40        50        60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
              550       560       570       580       590       600

              610       620       630                              
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPK-----------------------ELLALLK
       ::::::::::::::::::::::::::::::                       :::::::
XP_011 KEVVEATDSREKTGMVRPGEPLSGEKYSPKLPIARGALLLARPDQRCNAGFWQELLALLK
              610       620       630       640       650       660

       640       650       660       670       680       690       
pF1KSD CVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNIS
              670       680       690       700       710       720

       700       710       720         
pF1KSD VRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ
       ::::::::::::::::::::::::::::::::
XP_011 VRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ
              730       740       750  

>>XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiquiti  (714 aa)
 initn: 4706 init1: 4071 opt: 4078  Z-score: 2973.8  bits: 560.8 E(85289): 6.6e-159
Smith-Waterman score: 4680; 97.9% identity (97.9% similar) in 729 aa overlap (1-729:1-714)

               10        20        30        40        50        60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
       :::::::::::::::               ::::::::::::::::::::::::::::::
XP_011 KEVVEATDSREKTGM---------------ELLALLKCVEAEIANYEACLKEEVEKRKKF
              610                      620       630       640     

              670       680       690       700       710       720
pF1KSD KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
         650       660       670       680       690       700     

                
pF1KSD SRPYKAKRQ
       :::::::::
XP_011 SRPYKAKRQ
         710    

>>XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiquiti  (711 aa)
 initn: 3205 init1: 3205 opt: 3205  Z-score: 2339.8  bits: 443.5 E(85289): 1.4e-123
Smith-Waterman score: 4651; 97.5% identity (97.5% similar) in 729 aa overlap (1-729:1-711)

               10        20        30        40        50        60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
       ::::::::::::::::::::::::::::::::::::::::                  ::
XP_016 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAG------------------IK
              190       200       210       220                    

              250       260       270       280       290       300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
            230       240       250       260       270       280  

              310       320       330       340       350       360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
            290       300       310       320       330       340  

              370       380       390       400       410       420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
            350       360       370       380       390       400  

              430       440       450       460       470       480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
            410       420       430       440       450       460  

              490       500       510       520       530       540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
            470       480       490       500       510       520  

              550       560       570       580       590       600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
            530       540       550       560       570       580  

              610       620       630       640       650       660
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEVVEATDSREKTGMVRPGEPLSGEKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKF
            590       600       610       620       630       640  

              670       680       690       700       710       720
pF1KSD KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKR
            650       660       670       680       690       700  

                
pF1KSD SRPYKAKRQ
       :::::::::
XP_016 SRPYKAKRQ
            710 

>>XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiquiti  (734 aa)
 initn: 2556 init1: 2556 opt: 2556  Z-score: 1868.2  bits: 356.3 E(85289): 2.6e-97
Smith-Waterman score: 4595; 94.5% identity (94.5% similar) in 752 aa overlap (1-729:1-734)

               10        20        30        40        50        60
pF1KSD MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVYGFIFLFKWIEERRSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVDLGPTLSRMKDFTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIK
       ::::::::::::::::::::::::::::::::::::::::                  ::
XP_011 FELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAG------------------IK
              190       200       210       220                    

              250       260       270       280       290       300
pF1KSD YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKSPLVLEANR
            230       240       250       260       270       280  

              310       320       330       340       350       360
pF1KSD APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTPIVQRLPAF
            290       300       310       320       330       340  

              370       380       390       400       410       420
pF1KSD LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQQYSDDEDDYEDDEEDDVQNTNSALRYKG
            350       360       370       380       390       400  

              430       440       450       460       470       480
pF1KSD KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGTGKPGALSGSADGQLSVLQPNTINVLAEKLKESQKDLSIPLSIKTSSGAGSPAVAVPT
            410       420       430       440       450       460  

              490       500       510       520       530       540
pF1KSD HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANPTRPSSPVTSHISKVLFGEDDSLLR
            470       480       490       500       510       520  

              550       560       570       580       590       600
pF1KSD VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDCIRYNRAVRDLGPVISTGLLHLAEDGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVE
            530       540       550       560       570       580  

              610       620       630                              
pF1KSD KEVVEATDSREKTGMVRPGEPLSGEKYSPK-----------------------ELLALLK
       ::::::::::::::::::::::::::::::                       :::::::
XP_011 KEVVEATDSREKTGMVRPGEPLSGEKYSPKLPIARGALLLARPDQRCNAGFWQELLALLK
            590       600       610       620       630       640  

       640       650       660       670       680       690       
pF1KSD CVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISMLAQEGMLANLVEQNIS
            650       660       670       680       690       700  

       700       710       720         
pF1KSD VRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ
       ::::::::::::::::::::::::::::::::
XP_011 VRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ
            710       720       730    

>>NP_001186192 (OMIM: 610667) ubiquitin carboxyl-termina  (316 aa)
 initn: 725 init1: 149 opt: 583  Z-score: 440.7  bits: 90.9 E(85289): 8.3e-18
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)

                  10        20        30           40        50    
pF1KSD   MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
          : : :  .:::::.:: :.. :: .:.:::::..:. .      ::.:.::::::  
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

           60        70        80        90       100         110  
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
        ..            ::..:. ....:::.:.: :.:::.:..::::::.  :  :: ::
NP_001 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
                        70        80        90       100       110 

            120       130       140       150       160       170  
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
       :..:.:...:.   :: :..:.  . ..::: :: .  ..  :    ....  .::::::
NP_001 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
             120       130       140       150           160       

            180       190       200       210       220       230  
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
       :::..:::.:::::.  ::: :  ..:. : . .: :: .::   . ::    :::::::
NP_001 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
       170       180       190        200       210           220  

            240       250       260       270       280       290  
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
       .: ::.. :: .  . ...:: . : ..     ..   ::.. .....: ::        
NP_001 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
            230         240       250       260       270       280

            300       310       320       330       340       350  
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
                                                                   
NP_001 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKGK                        
              290       300       310                              

>>NP_001186191 (OMIM: 610667) ubiquitin carboxyl-termina  (326 aa)
 initn: 725 init1: 149 opt: 583  Z-score: 440.5  bits: 90.9 E(85289): 8.5e-18
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)

                  10        20        30           40        50    
pF1KSD   MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
          : : :  .:::::.:: :.. :: .:.:::::..:. .      ::.:.::::::  
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

           60        70        80        90       100         110  
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
        ..            ::..:. ....:::.:.: :.:::.:..::::::.  :  :: ::
NP_001 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
                        70        80        90       100       110 

            120       130       140       150       160       170  
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
       :..:.:...:.   :: :..:.  . ..::: :: .  ..  :    ....  .::::::
NP_001 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
             120       130       140       150           160       

            180       190       200       210       220       230  
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
       :::..:::.:::::.  ::: :  ..:. : . .: :: .::   . ::    :::::::
NP_001 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
       170       180       190        200       210           220  

            240       250       260       270       280       290  
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
       .: ::.. :: .  . ...:: . : ..     ..   ::.. .....: ::        
NP_001 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
            230         240       250       260       270       280

            300       310       320       330       340       350  
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
                                                                   
NP_001 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEKHFEKTLLGK              
              290       300       310       320                    

>>NP_001186190 (OMIM: 610667) ubiquitin carboxyl-termina  (328 aa)
 initn: 725 init1: 149 opt: 583  Z-score: 440.4  bits: 90.9 E(85289): 8.6e-18
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:4-272)

                  10        20        30           40        50    
pF1KSD   MNKG-WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIE
          : : :  .:::::.:: :.. :: .:.:::::..:. .      ::.:.::::::  
NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
               10        20        30        40        50        60

           60        70        80        90       100         110  
pF1KSD ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTL
        ..            ::..:. ....:::.:.: :.:::.:..::::::.  :  :: ::
NP_001 GEEPA---------GSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETL
                        70        80        90       100       110 

            120       130       140       150       160       170  
pF1KSD SRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVS
       :..:.:...:.   :: :..:.  . ..::: :: .  ..  :    ....  .::::::
NP_001 SEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTK----TSAKEEDAFHFVS
             120       130       140       150           160       

            180       190       200       210       220       230  
pF1KSD YVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMA
       :::..:::.:::::.  ::: :  ..:. : . .: :: .::   . ::    :::::::
NP_001 YVPVNGRLYELDGLREGPIDLGACNQDD-WISAVRPVIEKRIQKYSEGE----IRFNLMA
       170       180       190        200       210           220  

            240       250       260       270       280       290  
pF1KSD VVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSASNKS
       .: ::.. :: .  . ...:: . : ..     ..   ::.. .....: ::        
NP_001 IVSDRKMIYEQK--IAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRY
            230         240       250       260       270       280

            300       310       320       330       340       350  
pF1KSD PLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKLVVKPPGSSLNGVHPNPTP
                                                                   
NP_001 KIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQETK            
              290       300       310       320                    

>>XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin carbo  (393 aa)
 initn: 750 init1: 149 opt: 583  Z-score: 439.2  bits: 91.0 E(85289): 1e-17
Smith-Waterman score: 644; 40.5% identity (68.2% similar) in 289 aa overlap (2-284:71-339)

                                             10        20        30
pF1KSD                              MNKG-WLELESDPGLFTLLVEDFGVKGVQVE
                                     : : :  .:::::.:: :.. :: .:.:::
XP_005 LRSVAGGSWCGGQLRARGGSGRCVARAMTGNAGEWCLMESDPGVFTELIKGFGCRGAQVE
               50        60        70        80        90       100

                  40        50        60        70        80       
pF1KSD EIYDLQSKC---QGPVYGFIFLFKWIEERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLI
       ::..:. .      ::.:.::::::   ..            ::..:. ....:::.:.:
XP_005 EIWSLEPENFEKLKPVHGLIFLFKWQPGEEPA---------GSVVQDSRLDTIFFAKQVI
              110       120       130                140       150 

        90       100         110       120       130       140     
pF1KSD PNSCATHALLSVLLNCSSVD--LGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAHNSHA
        :.:::.:..::::::.  :  :: :::..:.:...:.   :: :..:.  . ..::: :
XP_005 NNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFA
             160       170       180       190       200       210 

         150       160       170       180       190       200     
pF1KSD RPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGRLFELDGLKVYPIDHGPWGEDEEWTDK
       : .  ..  :    ....  .:::::::::..:::.:::::.  ::: :  ..:. : . 
XP_005 RQQMFEFDTK----TSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDD-WISA
             220           230       240       250       260       

         210       220       230       240       250       260     
pF1KSD ARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRIKYEARLHVLKVNRQTVLEALQQLIRV
       .: :: .::   . ::    :::::::.: ::.. :: .  . ...:: . : ..     
XP_005 VRPVIEKRIQKYSEGE----IRFNLMAIVSDRKMIYEQK--IAELQRQLAEEPMDTDQGN
        270       280           290       300         310       320

         270       280       290       300       310       320     
pF1KSD TQPELIQTHKSQESQLPEESKSASNKSPLVLEANRAPAASEGNHTDGAEEAAGSCAQAPS
       ..   ::.. .....: ::                                         
XP_005 SMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVE
              330       340       350       360       370       380




729 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:01:20 2016 done: Thu Nov  3 01:01:21 2016
 Total Scan time:  9.720 Total Display time:  0.130

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com