(Circular) (Six-base) MAPSORT of: pFN21AA1346.seq Check: 6268 from: 1 to: 7606 pFN21AA1346 7606 bp With 182 enzymes: SgfI * January 16, 2009 15:23 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 5416 278 Size: 53 83 186 936 3880 2468 Fragments arranged by size: 3880 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 4949 1937 Size: 3012 4594 Acc65I G'GTAC_C Cuts at: 4927 4927 Size: 7606 AclI AA'CG_TT Cuts at: 1563 5733 6106 1563 Size: 4170 373 3063 Fragments arranged by size: 4170 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 5669 7053 7321 1632 Size: 4037 1384 268 1917 Fragments arranged by size: 4037 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 7409 AflIII A'CryG_T Cuts at: 1203 3101 3219 3518 6505 7482 1203 Size: 1898 118 299 2987 977 1327 Fragments arranged by size: 2987 1898 1327 977 299 118 AgeI A'CCGG_T Cuts at: 6437 6437 Size: 7606 AhdI GACnn_n'nnGTC Cuts at: 6335 6335 Size: 7606 AleI CACnn'nnGTG Cuts at: 1166 2829 1166 Size: 1663 5943 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 3827 1184 Size: 2643 4963 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3266 3298 3266 Size: 32 7574 AlwNI CAG_nnn'CTG Cuts at: 2257 2427 2485 2738 3156 3825 5349 6921 2257 Size: 170 58 253 418 669 1524 1572 2942 Fragments arranged by size: 2942 1572 1524 669 418 253 170 58 ApaI G_GGCC'C Cuts at: 2100 2100 Size: 7606 ApaLI G'TGCA_C Cuts at: 5663 6819 5663 Size: 1156 6450 ApoI r'AATT_y Cuts at: 1493 2819 4434 4915 5141 5293 7402 1493 Size: 1326 1615 481 226 152 2109 1697 Fragments arranged by size: 2109 1697 1615 1326 481 226 152 AseI AT'TA_AT Cuts at: 160 1032 4656 6160 160 Size: 872 3624 1504 1606 Fragments arranged by size: 3624 1606 1504 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 7606 AvaI C'yCGr_G Cuts at: 1870 1943 2021 2153 2209 4931 1870 Size: 73 78 132 56 2722 4545 Fragments arranged by size: 4545 2722 132 78 73 56 BamHI G'GATC_C Cuts at: 4283 4936 5303 4283 Size: 653 367 6586 Fragments arranged by size: 6586 653 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2157 2188 2293 2384 2444 Size: 325 217 627 370 31 105 91 60 Cuts at: 2444 2539 3440 3542 3596 4927 6382 618 Size: 95 901 102 54 1331 1455 1842 Fragments arranged by size: 1842 1455 1331 901 627 370 325 217 105 102 95 91 60 54 31 BanII G_rGCy'C Cuts at: 1391 2077 2100 2619 4464 4925 1391 Size: 686 23 519 1845 461 4072 Fragments arranged by size: 4072 1845 686 519 461 23 BbeI G_GCGC'C Cuts at: 2161 2297 2448 2161 Size: 136 151 7319 Fragments arranged by size: 7319 151 136 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2652 4639 928 Size: 971 753 1987 3895 Fragments arranged by size: 3895 1987 971 753 BbvCI CC'TCA_GC Cuts at: 2420 2420 Size: 7606 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 2790 2824 5797 5831 1903 Size: 34 50 34 769 34 2973 34 3678 Fragments arranged by size: 3678 2973 769 50 34 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 5498 6708 5498 Size: 1210 6396 BclI T'GATC_A Cuts at: 1548 1548 Size: 7606 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 6217 136 Size: 107 122 71 631 605 4545 1525 Fragments arranged by size: 4545 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2928 7601 2928 Size: 4673 2933 BlpI GC'TnA_GC Cuts at: 5023 5023 Size: 7606 Bme1580I G_kGCm'C Cuts at: 1790 2022 2100 5667 6823 1790 Size: 232 78 3567 1156 2573 Fragments arranged by size: 3567 2573 1156 232 78 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 7606 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2637 3024 3764 Size: 416 53 83 399 24 1220 387 740 Cuts at: 3764 4729 5337 6295 442 Size: 965 608 958 1753 Fragments arranged by size: 1753 1220 965 958 740 608 416 399 387 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 7606 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2219 2285 2294 4263 6266 1239 Size: 980 66 9 1969 2003 2579 Fragments arranged by size: 2579 2003 1969 980 66 9 Bpu10I CC'TnA_GC Cuts at: 2420 2420 Size: 7606 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3854 4420 5731 6596 6894 3854 Size: 566 1311 865 298 4566 Fragments arranged by size: 4566 1311 865 566 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2088 2633 3339 6269 882 Size: 617 589 545 706 2930 2219 Fragments arranged by size: 2930 2219 706 617 589 545 BsaAI yAC'GTr Cuts at: 493 1204 2595 3220 5397 493 Size: 711 1391 625 2177 2702 Fragments arranged by size: 2702 2177 1391 711 625 BsaBI GATnn'nnATC Cuts at: 7600 7600 Size: 7606 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2158 2294 2342 2445 Size: 53 83 186 936 625 136 48 103 Cuts at: 2445 3296 3957 5413 5795 6430 275 Size: 851 661 1456 382 635 1451 Fragments arranged by size: 1456 1451 936 851 661 635 625 382 186 136 103 83 53 48 BsaWI w'CCGG_w Cuts at: 2350 6039 6437 6711 6858 7269 2350 Size: 3689 398 274 147 411 2687 Fragments arranged by size: 3689 2687 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 4397 4427 1178 Size: 30 165 30 2994 30 4357 Fragments arranged by size: 4357 2994 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2183 2192 3750 4405 1186 Size: 997 9 1558 655 4387 Fragments arranged by size: 4387 1558 997 655 9 BseYI C'CCAG_C Cuts at: 2044 2402 2458 2891 3687 4744 6809 7305 2044 Size: 358 56 433 796 1057 2065 496 2345 Fragments arranged by size: 2345 2065 1057 796 496 433 358 56 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2222 4737 1163 Size: 573 486 2515 4032 Fragments arranged by size: 4032 2515 573 486 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2624 5056 5817 6845 1540 Size: 275 186 623 2432 761 1028 2301 Fragments arranged by size: 2432 2301 1028 761 623 275 186 BsiHKAI G_wGCw'C Cuts at: 3051 5667 5752 6823 3051 Size: 2616 85 1071 3834 Fragments arranged by size: 3834 2616 1071 85 BsiWI C'GTAC_G Cuts at: 3447 3447 Size: 7606 BsmI GAATG_Cn' Cuts at: 2895 4649 4904 5117 5210 2895 Size: 1754 255 213 93 5291 Fragments arranged by size: 5291 1754 255 213 93 BsmBI CGTCTCn'nnnn_ Cuts at: 2333 3964 2333 Size: 1631 5975 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2022 2077 2100 2619 3051 4464 4925 Size: 399 232 55 23 519 432 1413 461 Cuts at: 4925 5667 5752 6823 1391 Size: 742 85 1071 2174 Fragments arranged by size: 2174 1413 1071 742 519 461 432 399 232 85 55 23 BspEI T'CCGG_A Cuts at: 2350 7269 2350 Size: 4919 2687 BspHI T'CATG_A Cuts at: 4219 4837 5495 7225 4219 Size: 618 658 1730 4600 Fragments arranged by size: 4600 1730 658 618 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2463 4961 844 Size: 1619 2498 3489 Fragments arranged by size: 3489 2498 1619 BsrBI CCG'CTC Cuts at: 1394 1823 2071 5493 1394 Size: 429 248 3422 3507 Fragments arranged by size: 3507 3422 429 248 BsrDI GCAATG_nn' Cuts at: 65 1248 4498 6101 6275 65 Size: 1183 3250 1603 174 1396 Fragments arranged by size: 3250 1603 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2536 3459 3539 6250 6437 1700 Size: 110 726 923 80 2711 187 2869 Fragments arranged by size: 2869 2711 923 726 187 110 80 BsrGI T'GTAC_A Cuts at: 96 2880 4383 96 Size: 2784 1503 3319 Fragments arranged by size: 3319 2784 1503 BssHII G'CGCG_C Cuts at: 1925 2203 1925 Size: 278 7328 BssSI C'ACGA_G Cuts at: 5666 6678 5666 Size: 1012 6594 BstAPI GCAn_nnn'nTGC Cuts at: 794 3156 794 Size: 2362 5244 BstBI TT'CG_AA Cuts at: 6410 6410 Size: 7606 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 7606 BstXI CCAn_nnnn'nTGG Cuts at: 2797 2831 2797 Size: 34 7572 BstYI r'GATC_y Cuts at: 1972 2260 2928 3821 4166 4283 4936 5303 5688 Size: 288 668 893 345 117 653 367 385 Cuts at: 5688 5705 7157 7243 7255 7601 1972 Size: 17 1452 86 12 346 1977 Fragments arranged by size: 1977 1452 893 668 653 385 367 346 345 288 117 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2124 2824 3584 513 Size: 552 1059 700 760 4535 Fragments arranged by size: 4535 1059 760 700 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 6867 Fragments arranged by size: 6867 683 56 BtsI GCAGTG_nn' Cuts at: 2368 2708 2836 3257 3349 3470 3496 4909 5122 Size: 340 128 421 92 121 26 1413 213 Cuts at: 5122 5916 5936 2368 Size: 794 20 4038 Fragments arranged by size: 4038 1413 794 421 340 213 128 121 92 26 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 7606 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 7571 DraI TTT'AAA Cuts at: 4857 4910 4857 Size: 53 7553 DraIII CAC_nnn'GTG Cuts at: 3032 3531 3032 Size: 499 7107 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 3770 6613 809 Size: 507 2454 2843 1802 Fragments arranged by size: 2843 2454 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2136 2621 5053 Size: 54 1425 50 275 18 306 485 2432 Cuts at: 5053 5942 7571 8 Size: 889 1629 43 Fragments arranged by size: 2432 1629 1425 889 485 306 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2621 5053 1537 Size: 275 809 2432 4090 Fragments arranged by size: 4090 2432 809 275 EarI CTCTTCn'nnn_ Cuts at: 1353 4581 5536 1353 Size: 3228 955 3423 Fragments arranged by size: 3423 3228 955 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2222 2581 3605 6193 6567 6713 Size: 1064 138 633 359 1024 2588 374 146 Cuts at: 6713 387 Size: 1280 Fragments arranged by size: 2588 1280 1064 1024 633 374 359 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2219 2285 2294 4263 5669 6266 7053 Size: 393 587 66 9 1969 1406 597 787 Cuts at: 7053 7321 1239 Size: 268 1524 Fragments arranged by size: 1969 1524 1406 787 597 587 393 268 66 9 EcoNI CCTnn'n_nnAGG Cuts at: 2429 2429 Size: 7606 EcoO109I rG'GnC_Cy Cuts at: 2681 2701 3093 3701 2681 Size: 20 392 608 6586 Fragments arranged by size: 6586 608 392 20 EcoRI G'AATT_C Cuts at: 2819 4434 4915 5293 2819 Size: 1615 481 378 5132 Fragments arranged by size: 5132 1615 481 378 EcoRV GAT'ATC Cuts at: 4217 4225 4217 Size: 8 7598 FspI TGC'GCA Cuts at: 6112 6112 Size: 7606 HaeII r_GCGC'y Cuts at: 1678 2132 2161 2297 2448 2506 6753 1678 Size: 454 29 136 151 58 4247 2531 Fragments arranged by size: 4247 2531 454 151 136 58 29 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2390 2422 4052 4084 4742 Size: 32 135 32 818 32 1630 32 658 Cuts at: 4742 4774 4834 4866 6247 6279 6321 6353 1373 Size: 32 60 32 1381 32 42 32 2626 Fragments arranged by size: 2626 1630 1381 818 658 135 60 42 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 4950 5196 669 Size: 988 281 3012 246 3079 Fragments arranged by size: 3079 3012 988 281 246 HindIII A'AGCT_T Cuts at: 748 3906 4798 748 Size: 3158 892 3556 Fragments arranged by size: 3556 3158 892 HpaI GTT'AAC Cuts at: 5196 5196 Size: 7606 KasI G'GCGC_C Cuts at: 2157 2293 2444 2157 Size: 136 151 7319 Fragments arranged by size: 7319 151 136 KpnI G_GTAC'C Cuts at: 4931 4931 Size: 7606 MfeI C'AATT_G Cuts at: 5205 5205 Size: 7606 MluI A'CGCG_T Cuts at: 7482 7482 Size: 7606 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2124 3109 3333 4262 6720 6904 1305 Size: 819 985 224 929 2458 184 2007 Fragments arranged by size: 2458 2007 985 929 819 224 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 5784 Fragments arranged by size: 5784 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2778 2795 2829 3240 4259 5564 5923 Size: 648 1612 17 34 411 1019 1305 359 Cuts at: 5923 6082 518 Size: 159 2042 Fragments arranged by size: 2042 1612 1305 1019 648 411 359 159 34 17 MspA1I CmG'CkG Cuts at: 1606 2126 2257 2485 3603 4270 4410 4744 5022 Size: 520 131 228 1118 667 140 334 278 Cuts at: 5022 5699 6847 7092 1606 Size: 677 1148 245 2120 Fragments arranged by size: 2120 1148 1118 677 667 520 334 278 245 228 140 131 NaeI GCC'GGC Cuts at: 2538 2538 Size: 7606 NarI GG'CG_CC Cuts at: 2158 2294 2445 2158 Size: 136 151 7319 Fragments arranged by size: 7319 151 136 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 7054 NdeI CA'TA_TG Cuts at: 387 387 Size: 7606 NgoMIV G'CCGG_C Cuts at: 2536 2536 Size: 7606 NheI G'CTAG_C Cuts at: 1052 1052 Size: 7606 NotI GC'GGCC_GC Cuts at: 5053 5053 Size: 7606 NspI r_CATG'y Cuts at: 1132 1229 3105 3232 3522 4964 6509 1132 Size: 97 1876 127 290 1442 1545 2229 Fragments arranged by size: 2229 1876 1545 1442 290 127 97 PasI CC'CwG_GG Cuts at: 1348 2522 1348 Size: 1174 6432 PciI A'CATG_T Cuts at: 3101 3518 6505 3101 Size: 417 2987 4202 Fragments arranged by size: 4202 2987 417 PflMI CCAn_nnn'nTGG Cuts at: 1108 2257 2317 2812 3292 3782 1108 Size: 1149 60 495 480 490 4932 Fragments arranged by size: 4932 1149 495 490 480 60 PfoI T'CCnGG_A Cuts at: 4286 4286 Size: 7606 PmeI GTTT'AAAC Cuts at: 4910 4910 Size: 7606 PmlI CAC'GTG Cuts at: 2595 3220 2595 Size: 625 6981 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5675 5707 7188 7220 5675 Size: 32 1481 32 6061 Fragments arranged by size: 6061 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2701 3093 2701 Size: 392 7214 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 7606 PsiI TTA'TAA Cuts at: 5176 5176 Size: 7606 PspOMI G'GGCC_C Cuts at: 2096 2096 Size: 7606 PstI C_TGCA'G Cuts at: 830 4958 830 Size: 4128 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 7606 PvuII CAG'CTG Cuts at: 2257 3603 4744 2257 Size: 1346 1141 5119 Fragments arranged by size: 5119 1346 1141 SacII CC_GC'GG Cuts at: 2127 2127 Size: 7606 SalI G'TCGA_C Cuts at: 1936 4948 1936 Size: 3012 4594 SanDI GG'GwC_CC Cuts at: 3093 3093 Size: 7606 SbfI CC_TGCA'GG Cuts at: 4958 4958 Size: 7606 ScaI AGT'ACT Cuts at: 3794 5854 7566 3794 Size: 2060 1712 3834 Fragments arranged by size: 3834 2060 1712 SfcI C'TryA_G Cuts at: 826 1045 2546 3817 4954 6089 6770 6961 826 Size: 219 1501 1271 1137 1135 681 191 1471 Fragments arranged by size: 1501 1471 1271 1137 1135 681 219 191 SfoI GGC'GCC Cuts at: 2159 2295 2446 2159 Size: 136 151 7319 Fragments arranged by size: 7319 151 136 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 7606 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 7606 SmaI CCC'GGG Cuts at: 1872 2211 4933 1872 Size: 339 2722 4545 Fragments arranged by size: 4545 2722 339 SmlI C'TyrA_G Cuts at: 820 1017 1943 3833 4399 5710 6611 6873 820 Size: 197 926 1890 566 1311 901 262 1553 Fragments arranged by size: 1890 1553 1311 926 901 566 262 197 SnaBI TAC'GTA Cuts at: 493 5397 493 Size: 4904 2702 SpeI A'CTAG_T Cuts at: 152 4199 152 Size: 4047 3559 SphI G_CATG'C Cuts at: 1132 4964 1132 Size: 3832 3774 SspI AAT'ATT Cuts at: 5 52 5530 5 Size: 47 5478 2081 Fragments arranged by size: 5478 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 7606 StyI C'CwwG_G Cuts at: 513 1065 3329 3704 4029 5045 513 Size: 552 2264 375 325 1016 3074 Fragments arranged by size: 3074 2264 1016 552 375 325 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2657 3043 5633 5650 5803 5988 6433 Size: 1255 1077 386 2590 17 153 185 445 Cuts at: 6433 325 Size: 1498 Fragments arranged by size: 2590 1498 1255 1077 445 386 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2880 3744 3792 Size: 274 80 33 51 1443 903 864 48 Cuts at: 3792 4383 5852 7564 96 Size: 591 1469 1712 138 Fragments arranged by size: 1712 1469 1443 903 864 591 274 138 80 51 48 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2535 2567 3781 3813 7566 7598 2535 Size: 32 1214 32 3753 32 2543 Fragments arranged by size: 3753 2543 1214 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 7606 XbaI T'CTAG_A Cuts at: 4942 4942 Size: 7606 XcmI CCAnnnn_n'nnnnTGG Cuts at: 3476 3476 Size: 7606 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 7606 XmaI C'CCGG_G Cuts at: 1870 2209 4931 1870 Size: 339 2722 4545 Fragments arranged by size: 4545 2722 339 XmnI GAAnn'nnTTC Cuts at: 3939 4434 5735 3939 Size: 495 1301 5810 Fragments arranged by size: 5810 1301 495 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 5414 276 Size: 53 83 186 936 3880 2468 Fragments arranged by size: 3880 2468 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI EcoRV FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SacII SalI SanDI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AscI AvrII BaeI BfrBI BplI BstZ17I Bsu36I EcoICRI FalI FseI FspAI NruI NsiI PacI PspXI PsrI RsrII SacI SapI SexAI SfiI SrfI SwaI