Result of FASTA (omim) for
pFN21AA0247
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0247, 303 aa
1>>>pF1KA0247 303 - 303 aa - 303 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9170+/-0.0003; mu= 13.9957+/- 0.019
mean_var=97.4025+/-18.633, 0's: 0 Z-trim(119.7): 50 B-trim: 30 in 1/52
Lambda= 0.129954
statistics sampled from 33889 (33950) to 33889 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.398), width: 16
Scan time: 5.990
The best scores are: opt bits E(85289)
XP_011535714 (OMIM: 616761) PREDICTED: sushi domai ( 303) 2044 392.9 4.2e-109
NP_055549 (OMIM: 616761) sushi domain-containing p ( 303) 2044 392.9 4.2e-109
XP_016877328 (OMIM: 616761) PREDICTED: sushi domai ( 303) 2044 392.9 4.2e-109
XP_016877327 (OMIM: 616761) PREDICTED: sushi domai ( 303) 2044 392.9 4.2e-109
XP_011535715 (OMIM: 616761) PREDICTED: sushi domai ( 278) 1780 343.4 3.1e-94
XP_011507989 (OMIM: 615827) PREDICTED: sushi domai ( 332) 453 94.6 2.8e-19
XP_011507987 (OMIM: 615827) PREDICTED: sushi domai ( 492) 453 94.8 3.7e-19
XP_006711471 (OMIM: 615827) PREDICTED: sushi domai ( 492) 453 94.8 3.7e-19
XP_005273226 (OMIM: 615827) PREDICTED: sushi domai ( 492) 453 94.8 3.7e-19
XP_016857075 (OMIM: 615827) PREDICTED: sushi domai ( 549) 453 94.8 4.1e-19
XP_016857074 (OMIM: 615827) PREDICTED: sushi domai ( 549) 453 94.8 4.1e-19
XP_016857072 (OMIM: 615827) PREDICTED: sushi domai ( 564) 453 94.8 4.2e-19
XP_005273229 (OMIM: 615827) PREDICTED: sushi domai ( 330) 448 93.7 5.3e-19
XP_016857076 (OMIM: 615827) PREDICTED: sushi domai ( 490) 448 93.8 7.2e-19
XP_016857077 (OMIM: 615827) PREDICTED: sushi domai ( 490) 448 93.8 7.2e-19
NP_060452 (OMIM: 615827) sushi domain-containing p ( 490) 448 93.8 7.2e-19
XP_016857073 (OMIM: 615827) PREDICTED: sushi domai ( 562) 448 93.9 7.9e-19
>>XP_011535714 (OMIM: 616761) PREDICTED: sushi domain-co (303 aa)
initn: 2044 init1: 2044 opt: 2044 Z-score: 2079.8 bits: 392.9 E(85289): 4.2e-109
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)
10 20 30 40 50 60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
250 260 270 280 290 300
pF1KA0 KEA
:::
XP_011 KEA
>>NP_055549 (OMIM: 616761) sushi domain-containing prote (303 aa)
initn: 2044 init1: 2044 opt: 2044 Z-score: 2079.8 bits: 392.9 E(85289): 4.2e-109
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)
10 20 30 40 50 60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
250 260 270 280 290 300
pF1KA0 KEA
:::
NP_055 KEA
>>XP_016877328 (OMIM: 616761) PREDICTED: sushi domain-co (303 aa)
initn: 2044 init1: 2044 opt: 2044 Z-score: 2079.8 bits: 392.9 E(85289): 4.2e-109
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)
10 20 30 40 50 60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
250 260 270 280 290 300
pF1KA0 KEA
:::
XP_016 KEA
>>XP_016877327 (OMIM: 616761) PREDICTED: sushi domain-co (303 aa)
initn: 2044 init1: 2044 opt: 2044 Z-score: 2079.8 bits: 392.9 E(85289): 4.2e-109
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)
10 20 30 40 50 60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
250 260 270 280 290 300
pF1KA0 KEA
:::
XP_016 KEA
>>XP_011535715 (OMIM: 616761) PREDICTED: sushi domain-co (278 aa)
initn: 1780 init1: 1780 opt: 1780 Z-score: 1812.8 bits: 343.4 E(85289): 3.1e-94
Smith-Waterman score: 1780; 99.2% identity (100.0% similar) in 265 aa overlap (39-303:14-278)
10 20 30 40 50 60
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
..::::::::::::::::::::::::::::
XP_011 MEGFSEGEKSTLRSKVCPLPPEPENGGYICHPRPCRDPLTAGS
10 20 30 40
70 80 90 100 110 120
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLSIVASTASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLSIVASTASS
50 60 70 80 90 100
130 140 150 160 170 180
pF1KA0 VALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KA0 VPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGSRASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGSRASE
170 180 190 200 210 220
250 260 270 280 290 300
pF1KA0 TVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
230 240 250 260 270
>>XP_011507989 (OMIM: 615827) PREDICTED: sushi domain-co (332 aa)
initn: 321 init1: 137 opt: 453 Z-score: 467.2 bits: 94.6 E(85289): 2.8e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:82-330)
10 20 30 40 50 60
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
:.:::::: .: ..:::::: . . :.
XP_011 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
60 70 80 90 100 110
70 80 90 100 110 120
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
:.:. : :: : .::::.::. ::: :.... : .:. .:: .: . : .::: ::
XP_011 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
120 130 140 150 160
130 140 150 160 170 180
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
.:: :.::::.: ..: :.:. : .. :.: ..:::: : ::::.::: :.
XP_011 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
170 180 190 200 210 220
190 200 210 220 230 240
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
. : . : :.: : .: ..: : : ..: : .::.: :.. :
XP_011 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
230 240 250 260 270
250 260 270 280 290 300
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
.:: .... . : . . . : .. : . . . .:.:::..:
XP_011 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
280 290 300 310 320 330
>>XP_011507987 (OMIM: 615827) PREDICTED: sushi domain-co (492 aa)
initn: 321 init1: 137 opt: 453 Z-score: 464.8 bits: 94.8 E(85289): 3.7e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:242-490)
10 20 30 40 50 60
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
:.:::::: .: ..:::::: . . :.
XP_011 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
220 230 240 250 260 270
70 80 90 100 110 120
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
:.:. : :: : .::::.::. ::: :.... : .:. .:: .: . : .::: ::
XP_011 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
280 290 300 310 320
130 140 150 160 170 180
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
.:: :.::::.: ..: :.:. : .. :.: ..:::: : ::::.::: :.
XP_011 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
330 340 350 360 370 380
190 200 210 220 230 240
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
. : . : :.: : .: ..: : : ..: : .::.: :.. :
XP_011 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
390 400 410 420 430
250 260 270 280 290 300
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
.:: .... . : . . . : .. : . . . .:.:::..:
XP_011 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
440 450 460 470 480 490
>>XP_006711471 (OMIM: 615827) PREDICTED: sushi domain-co (492 aa)
initn: 321 init1: 137 opt: 453 Z-score: 464.8 bits: 94.8 E(85289): 3.7e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:242-490)
10 20 30 40 50 60
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
:.:::::: .: ..:::::: . . :.
XP_006 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
220 230 240 250 260 270
70 80 90 100 110 120
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
:.:. : :: : .::::.::. ::: :.... : .:. .:: .: . : .::: ::
XP_006 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
280 290 300 310 320
130 140 150 160 170 180
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
.:: :.::::.: ..: :.:. : .. :.: ..:::: : ::::.::: :.
XP_006 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
330 340 350 360 370 380
190 200 210 220 230 240
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
. : . : :.: : .: ..: : : ..: : .::.: :.. :
XP_006 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
390 400 410 420 430
250 260 270 280 290 300
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
.:: .... . : . . . : .. : . . . .:.:::..:
XP_006 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
440 450 460 470 480 490
>>XP_005273226 (OMIM: 615827) PREDICTED: sushi domain-co (492 aa)
initn: 321 init1: 137 opt: 453 Z-score: 464.8 bits: 94.8 E(85289): 3.7e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:242-490)
10 20 30 40 50 60
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
:.:::::: .: ..:::::: . . :.
XP_005 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
220 230 240 250 260 270
70 80 90 100 110 120
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
:.:. : :: : .::::.::. ::: :.... : .:. .:: .: . : .::: ::
XP_005 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
280 290 300 310 320
130 140 150 160 170 180
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
.:: :.::::.: ..: :.:. : .. :.: ..:::: : ::::.::: :.
XP_005 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
330 340 350 360 370 380
190 200 210 220 230 240
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
. : . : :.: : .: ..: : : ..: : .::.: :.. :
XP_005 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
390 400 410 420 430
250 260 270 280 290 300
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
.:: .... . : . . . : .. : . . . .:.:::..:
XP_005 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
440 450 460 470 480 490
>>XP_016857075 (OMIM: 615827) PREDICTED: sushi domain-co (549 aa)
initn: 321 init1: 137 opt: 453 Z-score: 464.2 bits: 94.8 E(85289): 4.1e-19
Smith-Waterman score: 471; 35.4% identity (60.1% similar) in 268 aa overlap (39-302:299-547)
10 20 30 40 50 60
pF1KA0 KSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGS
:.:::::: .: ..:::::: . . :.
XP_016 PGFKLDGSAYLECLQNLIWSSSPPRCLALEAQVCPLPPMVSHGDFVCHPRPC-ERYNHGT
270 280 290 300 310 320
70 80 90 100 110 120
pF1KA0 VIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTA
:.:. : :: : .::::.::. ::: :.... : .:. .:: .: . : .::: ::
XP_016 VVEFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTA
330 340 350 360 370 380
130 140 150 160 170 180
pF1KA0 SSVALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSS
.:: :.::::.: ..: :.:. : .. :.: ..:::: : ::::.::: :.
XP_016 TSVLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGL
390 400 410 420 430 440
190 200 210 220 230 240
pF1KA0 GHCVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGS
. : . : :.: : .: ..: : : ..: : .::.: :.. :
XP_016 SALGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-S
450 460 470 480 490
250 260 270 280 290 300
pF1KA0 RASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA
.:: .... . : . . . : .. : . . . .:.:::..:
XP_016 GSSE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
500 510 520 530 540
303 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:26:37 2016 done: Wed Nov 2 18:26:38 2016
Total Scan time: 5.990 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]