FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0247, 303 aa
  1>>>pF1KA0247 303 - 303 aa - 303 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7571+/-0.000692; mu= 14.9485+/- 0.042
 mean_var=92.9491+/-17.837, 0's: 0 Z-trim(112.8): 31  B-trim: 6 in 1/50
 Lambda= 0.133031
 statistics sampled from 13465 (13492) to 13465 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.414), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS9796.1 SUSD6 gene_id:9766|Hs108|chr14          ( 303) 2044 401.7 3.6e-112
CCDS41471.1 SUSD4 gene_id:55061|Hs108|chr1         ( 490)  448 95.6 8.3e-20


>>CCDS9796.1 SUSD6 gene_id:9766|Hs108|chr14               (303 aa)
 initn: 2044 init1: 2044 opt: 2044  Z-score: 2127.4  bits: 401.7 E(32554): 3.6e-112
Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KA0 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RDPLTAGSVIEYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDKDTHTSLGVPTLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IVASTASSVALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VYGSSGHCVPPADPRVQIVLSEGSGPSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AWGSRASETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL
              250       260       270       280       290       300

          
pF1KA0 KEA
       :::
CCDS97 KEA
          

>>CCDS41471.1 SUSD4 gene_id:55061|Hs108|chr1              (490 aa)
 initn: 316 init1: 137 opt: 448  Z-score: 469.1  bits: 95.6 E(32554): 8.3e-20
Smith-Waterman score: 466; 35.3% identity (59.8% similar) in 266 aa overlap (41-302:242-488)

               20        30        40        50        60        70
pF1KA0 TSVFAVASVGHGVFLPLVILCTLLGDGLASVCPLPPEPENGGYICHPRPCRDPLTAGSVI
                                     ::::::   .: ..:::::: .  . :.:.
CCDS41 PGFKLDGSAYLECLQNLIWSSSPPRCLALEVCPLPPMVSHGDFVCHPRPC-ERYNHGTVV
             220       230       240       250       260        270

               80        90       100         110       120        
pF1KA0 EYLCAEGYMLKGDYKYLTCKNGEWKPAMEISCRLNEDK--DTHTSLGVPTLSIVASTASS
       :. :  :: : .::::.::. ::: :.... :  .:.   .:: .: . : .::: ::.:
CCDS41 EFYCDPGYSLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETL-LTTWKIVAFTATS
              280       290       300       310        320         

      130       140       150        160       170       180       
pF1KA0 VALILLLVVLFVLLQPKLKSFHHSRRD-QGVSGDQVSIMVDGVQVALPSYEEAVYGSSGH
       : :.::::.:  ..: :.:.    :   .. :.:   ..:::: : ::::.::: :. . 
CCDS41 VLLVLLLVILARMFQTKFKAHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGLSA
     330       340       350       360       370       380         

       190       200        210       220       230       240      
pF1KA0 CVPPADPRVQIVLSEGSG-PSGRSVPREQQLPDQGACSSAGGEDEAPGQSGLCEAWGSRA
         :        . : :.: :    .: ..: :   :  ..:  : .::.:  :..  : .
CCDS41 LGPG------YMASVGQGCP----LPVDDQSPP--AYPGSGDTDTGPGESETCDSV-SGS
     390             400           410         420       430       

        250       260       270       280       290       300    
pF1KA0 SETVMVHQATTSSWVAGSGNRQLAHKETADSENSDIQSLLSLTSEEYTDDIPLLKEA 
       ::  ....  .      : .    . .   :   .. :  .  . . .:.:::..:  
CCDS41 SE--LLQSLYSPPRCQESTHPASDNPDIIASTAEEVAS--TSPGIDIADEIPLMEEDP
          440       450       460       470         480       490




303 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 18:26:36 2016 done: Wed Nov  2 18:26:36 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]