Result of FASTA (ccds) for
pFN21AA0130
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0130, 989 aa
1>>>pF1KA0130 989 - 989 aa - 989 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0543+/-0.0011; mu= 16.7033+/- 0.066
mean_var=65.1167+/-12.830, 0's: 0 Z-trim(101.6): 33 B-trim: 0 in 0/49
Lambda= 0.158938
statistics sampled from 6584 (6591) to 6584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.202), width: 16
Scan time: 2.980
The best scores are: opt bits E(32554)
CCDS11359.1 MED24 gene_id:9862|Hs108|chr17 ( 989) 6481 1495.7 0
CCDS42315.1 MED24 gene_id:9862|Hs108|chr17 ( 976) 5948 1373.5 0
CCDS82117.1 MED24 gene_id:9862|Hs108|chr17 (1008) 5256 1214.8 0
>>CCDS11359.1 MED24 gene_id:9862|Hs108|chr17 (989 aa)
initn: 6481 init1: 6481 opt: 6481 Z-score: 8021.5 bits: 1495.7 E(32554): 0
Smith-Waterman score: 6481; 99.8% identity (99.9% similar) in 989 aa overlap (1-989:1-989)
10 20 30 40 50 60
pF1KA0 MKVVNLKQAILQAWKERWSYYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 AKLEEASSWTAIEHSLLKLGEILTNLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTG
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS11 AKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 FPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 EELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 NFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 LKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 ESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKIL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 NPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 SIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 ERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 KGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 LVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 EDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 LANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSA
910 920 930 940 950 960
970 980
pF1KA0 MSSPKVVLAITDLSLPLGRQVAAKAIAAL
:::::::::::::::::::::::::::::
CCDS11 MSSPKVVLAITDLSLPLGRQVAAKAIAAL
970 980
>>CCDS42315.1 MED24 gene_id:9862|Hs108|chr17 (976 aa)
initn: 5948 init1: 5948 opt: 5948 Z-score: 7361.1 bits: 1373.5 E(32554): 0
Smith-Waterman score: 6374; 98.5% identity (98.6% similar) in 989 aa overlap (1-989:1-976)
10 20 30 40 50 60
pF1KA0 MKVVNLKQAILQAWKERWSYYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS42 MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL
::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS42 LSYLKYAISSQ-------------FDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL
70 80 90 100
130 140 150 160 170 180
pF1KA0 CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KA0 AKLEEASSWTAIEHSLLKLGEILTNLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTG
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS42 AKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KA0 FPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGT
230 240 250 260 270 280
310 320 330 340 350 360
pF1KA0 EELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCT
290 300 310 320 330 340
370 380 390 400 410 420
pF1KA0 NFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNI
350 360 370 380 390 400
430 440 450 460 470 480
pF1KA0 LKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSE
410 420 430 440 450 460
490 500 510 520 530 540
pF1KA0 ESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKIL
470 480 490 500 510 520
550 560 570 580 590 600
pF1KA0 NPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFE
530 540 550 560 570 580
610 620 630 640 650 660
pF1KA0 SIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYN
590 600 610 620 630 640
670 680 690 700 710 720
pF1KA0 ERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLE
650 660 670 680 690 700
730 740 750 760 770 780
pF1KA0 KGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVT
710 720 730 740 750 760
790 800 810 820 830 840
pF1KA0 LVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDI
770 780 790 800 810 820
850 860 870 880 890 900
pF1KA0 EDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRV
830 840 850 860 870 880
910 920 930 940 950 960
pF1KA0 LANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSA
890 900 910 920 930 940
970 980
pF1KA0 MSSPKVVLAITDLSLPLGRQVAAKAIAAL
:::::::::::::::::::::::::::::
CCDS42 MSSPKVVLAITDLSLPLGRQVAAKAIAAL
950 960 970
>>CCDS82117.1 MED24 gene_id:9862|Hs108|chr17 (1008 aa)
initn: 5256 init1: 5256 opt: 5256 Z-score: 6503.3 bits: 1214.8 E(32554): 0
Smith-Waterman score: 6433; 97.9% identity (98.0% similar) in 1008 aa overlap (1-989:1-1008)
10 20 30 40 50 60
pF1KA0 MKVVNLKQAILQAWKERWSYYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS82 MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 LSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI
130 140 150 160 170 180
190 200 210 220
pF1KA0 AKLEEAS-------------------SWTAIEHSLLKLGEILTNLSNPQLRSQAEQCGTL
::::::: ::::::::::::::::.:::::::::::::::::
CCDS82 AKLEEASLHTSQGLGQGGTRANQPTASWTAIEHSLLKLGEILANLSNPQLRSQAEQCGTL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KA0 IRSIPTMLSVHAEQMHKTGFPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IRSIPTMLSVHAEQMHKTGFPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLF
250 260 270 280 290 300
290 300 310 320 330 340
pF1KA0 VLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFL
310 320 330 340 350 360
350 360 370 380 390 400
pF1KA0 LKLTPLLDKADQRCNCDCTNFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LKLTPLLDKADQRCNCDCTNFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENA
370 380 390 400 410 420
410 420 430 440 450 460
pF1KA0 NIQPNIQLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NIQPNIQLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKL
430 440 450 460 470 480
470 480 490 500 510 520
pF1KA0 KSFARKFINLNEFTTYGSEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSFARKFINLNEFTTYGSEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAE
490 500 510 520 530 540
530 540 550 560 570 580
pF1KA0 VPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSI
550 560 570 580 590 600
590 600 610 620 630 640
pF1KA0 SAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQ
610 620 630 640 650 660
650 660 670 680 690 700
pF1KA0 MIRQLAGPLFSENTLQFYNERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MIRQLAGPLFSENTLQFYNERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLL
670 680 690 700 710 720
710 720 730 740 750 760
pF1KA0 PPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHT
730 740 750 760 770 780
770 780 790 800 810 820
pF1KA0 LRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSY
790 800 810 820 830 840
830 840 850 860 870 880
pF1KA0 SSHKGQASTRQKKRHREDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SSHKGQASTRQKKRHREDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSS
850 860 870 880 890 900
890 900 910 920 930 940
pF1KA0 SLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRG
910 920 930 940 950 960
950 960 970 980
pF1KA0 SVLQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SVLQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
970 980 990 1000
989 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:10:46 2016 done: Wed Nov 2 18:10:46 2016
Total Scan time: 2.980 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]