Result of FASTA (omim) for
pFN21AA0082
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0082, 835 aa
1>>>pF1KA0082 835 - 835 aa - 835 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9146+/-0.000443; mu= 17.5142+/- 0.028
mean_var=74.4571+/-14.537, 0's: 0 Z-trim(110.3): 62 B-trim: 225 in 1/49
Lambda= 0.148635
statistics sampled from 18519 (18576) to 18519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.577), E-opt: 0.2 (0.218), width: 16
Scan time: 8.190
The best scores are: opt bits E(85289)
NP_055865 (OMIM: 616189) cap-specific mRNA (nucleo ( 835) 5619 1215.1 0
XP_005249012 (OMIM: 616189) PREDICTED: cap-specifi ( 803) 5306 1147.9 0
XP_016878933 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 320 78.8 1.1e-13
NP_001311303 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 320 78.8 1.1e-13
XP_011521531 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 320 78.8 1.1e-13
NP_001311306 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 320 78.8 1.1e-13
XP_011521530 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 320 78.8 1.1e-13
NP_001311308 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 320 78.8 1.1e-13
NP_060818 (OMIM: 616190) cap-specific mRNA (nucleo ( 770) 320 78.8 1.1e-13
NP_001311307 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 320 78.8 1.1e-13
NP_001093112 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 320 78.8 1.1e-13
XP_005272652 (OMIM: 300499,309549) PREDICTED: puta ( 327) 174 47.3 0.00013
NP_803188 (OMIM: 300499,309549) putative tRNA (cyt ( 327) 174 47.3 0.00013
XP_011542197 (OMIM: 300499,309549) PREDICTED: puta ( 335) 174 47.3 0.00014
XP_016884871 (OMIM: 300499,309549) PREDICTED: puta ( 335) 174 47.3 0.00014
NP_036412 (OMIM: 300499,309549) putative tRNA (cyt ( 329) 165 45.4 0.00051
XP_011542196 (OMIM: 300499,309549) PREDICTED: puta ( 337) 165 45.4 0.00052
XP_011542195 (OMIM: 300499,309549) PREDICTED: puta ( 337) 165 45.4 0.00052
>>NP_055865 (OMIM: 616189) cap-specific mRNA (nucleoside (835 aa)
initn: 5619 init1: 5619 opt: 5619 Z-score: 6507.3 bits: 1215.1 E(85289): 0
Smith-Waterman score: 5619; 100.0% identity (100.0% similar) in 835 aa overlap (1-835:1-835)
10 20 30 40 50 60
pF1KA0 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
730 740 750 760 770 780
790 800 810 820 830
pF1KA0 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
790 800 810 820 830
>>XP_005249012 (OMIM: 616189) PREDICTED: cap-specific mR (803 aa)
initn: 5306 init1: 5306 opt: 5306 Z-score: 6144.9 bits: 1147.9 E(85289): 0
Smith-Waterman score: 5306; 99.9% identity (100.0% similar) in 793 aa overlap (1-793:1-793)
10 20 30 40 50 60
pF1KA0 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKRRTDPECTAPIKKQKKRVAELALSLSSTSDDEPPSSVSHGAKASTTSLSGSDSETEGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QHSSDSFDDAFKADSLVEGTSSRYSMYNSVSQKLMAKMGFREGEGLGKYSQGRKDIVEAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQKGRRGLGLTLRGFDQELNVDWRDEPEPSACEQVSWFPECTTEIPDTQEMSDWMVVGKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KMIIEDETEFCGEELLHSVLQCKSVFDVLDGEEMRRARTRANPYEMIRGVFFLNRAAMKM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ANMDFVFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGFSEYVLWRKKWHAKGFGM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLKGPNDFKLEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDRKGVHF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVYLL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKECLRLWG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IPDQARVAPSSSDPKSKFFELIQGTEIDIFSYKPTLLTSKTLEKIRPVFDYRCMVSGSEQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KFLIGLGKSQIYTWDGRQSDRWIKLDLKTELPRDTLLSVEIVHELKGEGKAQRKISAIHI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDVLVLNGTDVREQHFNQRIQLAEKFVKAVSKPSRPDMNPIRVKEVYRLEEMEKIFVRLE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKIIKGSSGTPKLSYTGRDDRHFVPMGLYIVRTVNEPWTMGFSKSFKKKFFYNKKTKDST
730 740 750 760 770 780
790 800 810 820 830
pF1KA0 FDLPADSIAPFHICYYGRLFWEWGDGIRVHDSQKPQDQDKLSKEDVLSFIQMHRA
::::::::::::.
XP_005 FDLPADSIAPFHLPSLACLSKMD
790 800
>>XP_016878933 (OMIM: 616190) PREDICTED: cap-specific mR (770 aa)
initn: 312 init1: 284 opt: 320 Z-score: 366.9 bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)
250 260 270 280 290
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
.: .::.: ..:. .. .: :.
XP_016 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
120 130 140 150 160 170
300 310 320 330 340 350
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
.. .. .:. . : .. : :.: :. ::: . .....::. ..
XP_016 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
180 190 200 210 220
360 370 380 390 400 410
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :..
XP_016 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
230 240 250 260 270 280
420 430 440 450 460 470
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
XP_016 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
290 300 310 320 330 340
480 490 500 510 520 530
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
. :.: .: ::
XP_016 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
350 360 370 380 390 400
>>NP_001311303 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 312 init1: 284 opt: 320 Z-score: 366.9 bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)
250 260 270 280 290
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
.: .::.: ..:. .. .: :.
NP_001 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
120 130 140 150 160 170
300 310 320 330 340 350
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
.. .. .:. . : .. : :.: :. ::: . .....::. ..
NP_001 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
180 190 200 210 220
360 370 380 390 400 410
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :..
NP_001 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
230 240 250 260 270 280
420 430 440 450 460 470
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
NP_001 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
290 300 310 320 330 340
480 490 500 510 520 530
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
. :.: .: ::
NP_001 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
350 360 370 380 390 400
>>XP_011521531 (OMIM: 616190) PREDICTED: cap-specific mR (770 aa)
initn: 312 init1: 284 opt: 320 Z-score: 366.9 bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)
250 260 270 280 290
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
.: .::.: ..:. .. .: :.
XP_011 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
120 130 140 150 160 170
300 310 320 330 340 350
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
.. .. .:. . : .. : :.: :. ::: . .....::. ..
XP_011 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
180 190 200 210 220
360 370 380 390 400 410
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :..
XP_011 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
230 240 250 260 270 280
420 430 440 450 460 470
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
XP_011 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
290 300 310 320 330 340
480 490 500 510 520 530
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
. :.: .: ::
XP_011 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
350 360 370 380 390 400
>>NP_001311306 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 312 init1: 284 opt: 320 Z-score: 366.9 bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)
250 260 270 280 290
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
.: .::.: ..:. .. .: :.
NP_001 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
120 130 140 150 160 170
300 310 320 330 340 350
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
.. .. .:. . : .. : :.: :. ::: . .....::. ..
NP_001 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
180 190 200 210 220
360 370 380 390 400 410
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :..
NP_001 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
230 240 250 260 270 280
420 430 440 450 460 470
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
NP_001 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
290 300 310 320 330 340
480 490 500 510 520 530
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
. :.: .: ::
NP_001 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
350 360 370 380 390 400
>>XP_011521530 (OMIM: 616190) PREDICTED: cap-specific mR (770 aa)
initn: 312 init1: 284 opt: 320 Z-score: 366.9 bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)
250 260 270 280 290
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
.: .::.: ..:. .. .: :.
XP_011 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
120 130 140 150 160 170
300 310 320 330 340 350
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
.. .. .:. . : .. : :.: :. ::: . .....::. ..
XP_011 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
180 190 200 210 220
360 370 380 390 400 410
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :..
XP_011 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
230 240 250 260 270 280
420 430 440 450 460 470
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
XP_011 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
290 300 310 320 330 340
480 490 500 510 520 530
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
. :.: .: ::
XP_011 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
350 360 370 380 390 400
>>NP_001311308 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 312 init1: 284 opt: 320 Z-score: 366.9 bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)
250 260 270 280 290
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
.: .::.: ..:. .. .: :.
NP_001 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
120 130 140 150 160 170
300 310 320 330 340 350
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
.. .. .:. . : .. : :.: :. ::: . .....::. ..
NP_001 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
180 190 200 210 220
360 370 380 390 400 410
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :..
NP_001 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
230 240 250 260 270 280
420 430 440 450 460 470
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
NP_001 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
290 300 310 320 330 340
480 490 500 510 520 530
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
. :.: .: ::
NP_001 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
350 360 370 380 390 400
>>NP_060818 (OMIM: 616190) cap-specific mRNA (nucleoside (770 aa)
initn: 312 init1: 284 opt: 320 Z-score: 366.9 bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)
250 260 270 280 290
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
.: .::.: ..:. .. .: :.
NP_060 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
120 130 140 150 160 170
300 310 320 330 340 350
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
.. .. .:. . : .. : :.: :. ::: . .....::. ..
NP_060 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
180 190 200 210 220
360 370 380 390 400 410
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :..
NP_060 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
230 240 250 260 270 280
420 430 440 450 460 470
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
NP_060 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
290 300 310 320 330 340
480 490 500 510 520 530
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
. :.: .: ::
NP_060 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
350 360 370 380 390 400
>>NP_001311307 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 312 init1: 284 opt: 320 Z-score: 366.9 bits: 78.8 E(85289): 1.1e-13
Smith-Waterman score: 320; 29.5% identity (59.9% similar) in 227 aa overlap (276-491:143-361)
250 260 270 280 290
pF1KA0 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
.: .::.: ..:. .. .: :.
NP_001 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
120 130 140 150 160 170
300 310 320 330 340 350
pF1KA0 GFGMTLKGPNDFKL-EDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTDR
.. .. .:. . : .. : :.: :. ::: . .....::. ..
NP_001 TLNPYHEANDDLMMIMDDRLIANTLHWWYFGP---DNTGDIMTLKFLTGLQNFI---SSM
180 190 200 210 220
360 370 380 390 400 410
pF1KA0 KGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVG
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :..
NP_001 ATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSIN
230 240 250 260 270 280
420 430 440 450 460 470
pF1KA0 LVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNTD
:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
NP_001 LMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRKA
290 300 310 320 330 340
480 490 500 510 520 530
pF1KA0 SDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRKE
. :.: .: ::
NP_001 LFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYF
350 360 370 380 390 400
835 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 17:59:40 2016 done: Wed Nov 2 17:59:41 2016
Total Scan time: 8.190 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]