Restriction map for
pFN21AE9607
(Circular) (Six-base) MAPSORT of: pFN21AE9607.seq Check: 5937 from: 1 to: 5509
pFN21AE9607 5509 bp
With 182 enzymes: SgfI *
March 28, 2012 12:18 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3319 278
Size: 53 83 186 936 1783 2468
Fragments arranged by size:
2468 1783 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2422 2852 1937
Size: 485 430 4594
Fragments arranged by size:
4594 485 430
Acc65I G'GTAC_C
Cuts at: 2830 2830
Size: 5509
AclI AA'CG_TT
Cuts at: 1563 3636 4009 1563
Size: 2073 373 3063
Fragments arranged by size:
3063 2073 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2178 2363 2660 3572 4956 5224 1632
Size: 546 185 297 912 1384 268 1917
Fragments arranged by size:
1917 1384 912 546 297 268 185
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5312
AflIII A'CryG_T
Cuts at: 1203 4408 5385 1203
Size: 3205 977 1327
Fragments arranged by size:
3205 1327 977
AgeI A'CCGG_T
Cuts at: 4340 4340
Size: 5509
AhdI GACnn_n'nnGTC
Cuts at: 4238 4238
Size: 5509
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5509
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5509
AlwNI CAG_nnn'CTG
Cuts at: 2560 3252 4824 2560
Size: 692 1572 3245
Fragments arranged by size:
3245 1572 692
ApaLI G'TGCA_C
Cuts at: 3566 4722 3566
Size: 1156 4353
ApoI r'AATT_y
Cuts at: 1493 2550 2685 2818 3044 3196 5305 1493
Size: 1057 135 133 226 152 2109 1697
Fragments arranged by size:
2109 1697 1057 226 152 135 133
AseI AT'TA_AT
Cuts at: 160 1032 4063 160
Size: 872 3031 1606
Fragments arranged by size:
3031 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5509
AvaI C'yCGr_G
Cuts at: 1870 1943 2834 1870
Size: 73 891 4545
Fragments arranged by size:
4545 891 73
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2397 2430 2397
Size: 33 5476
BamHI G'GATC_C
Cuts at: 2839 3206 2839
Size: 367 5142
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2830 4285 618
Size: 325 217 627 1043 1455 1842
Fragments arranged by size:
1842 1455 1043 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2828 1391
Size: 1437 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2145 928
Size: 971 246 4292
Fragments arranged by size:
4292 971 246
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3700 3734 1903
Size: 34 1763 34 3678
Fragments arranged by size:
3678 1763 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3401 4611 3401
Size: 1210 4299
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5509
BfrBI ATG'CAT
Cuts at: 2605 2804 2605
Size: 199 5310
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4120 136
Size: 107 122 71 631 605 2448 1525
Fragments arranged by size:
2448 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2146 5504 2146
Size: 3358 2151
BlpI GC'TnA_GC
Cuts at: 2926 2926
Size: 5509
Bme1580I G_kGCm'C
Cuts at: 1790 2443 3570 4726 1790
Size: 653 1127 1156 2573
Fragments arranged by size:
2573 1156 1127 653
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5509
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2532 3240 4198
Size: 416 53 83 399 24 1115 708 958
Cuts at: 4198 442
Size: 1753
Fragments arranged by size:
1753 1115 958 708 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5509
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 4169 1239
Size: 2930 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3634 4499 4797 3634
Size: 865 298 4346
Fragments arranged by size:
4346 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2241 2498 4172 882
Size: 617 742 257 1674 2219
Fragments arranged by size:
2219 1674 742 617 257
BsaAI yAC'GTr
Cuts at: 493 1204 3300 493
Size: 711 2096 2702
Fragments arranged by size:
2702 2096 711
BsaBI GATnn'nnATC
Cuts at: 5503 5503
Size: 5509
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3316 3698 4333 275
Size: 53 83 186 936 1783 382 635 1451
Fragments arranged by size:
1783 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2638 3942 4340 4614 4761 5172 2638
Size: 1304 398 274 147 411 2975
Fragments arranged by size:
2975 1304 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5284
Fragments arranged by size:
5284 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2600 1186
Size: 1414 4095
BseYI C'CCAG_C
Cuts at: 4712 5208 4712
Size: 496 5013
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4936
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2959 3720 4748 1540
Size: 275 186 958 761 1028 2301
Fragments arranged by size:
2301 1028 958 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3570 3655 4726 3570
Size: 85 1071 4353
Fragments arranged by size:
4353 1071 85
BsmI GAATG_Cn'
Cuts at: 2716 3020 3113 2716
Size: 304 93 5112
Fragments arranged by size:
5112 304 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2443 2828 3570 3655 4726 1391
Size: 399 653 385 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 653 399 385 85
BspEI T'CCGG_A
Cuts at: 2638 5172 2638
Size: 2534 2975
BspHI T'CATG_A
Cuts at: 3398 5128 3398
Size: 1730 3779
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2864 844
Size: 2020 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3396 1394
Size: 429 1573 3507
Fragments arranged by size:
3507 1573 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 4004 4178 65
Size: 1183 2756 174 1396
Fragments arranged by size:
2756 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4153 4340 1700
Size: 110 2343 187 2869
Fragments arranged by size:
2869 2343 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5509
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5509
BssSI C'ACGA_G
Cuts at: 2442 3569 4581 2442
Size: 1127 1012 3370
Fragments arranged by size:
3370 1127 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5509
BstBI TT'CG_AA
Cuts at: 4313 4313
Size: 5509
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5509
BstXI CCAn_nnnn'nTGG
Cuts at: 2395 2395
Size: 5509
BstYI r'GATC_y
Cuts at: 1972 2146 2839 3206 3591 3608 5060 5146 5158
Size: 174 693 367 385 17 1452 86 12
Cuts at: 5158 5504 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 693 385 367 346 174 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4957
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4770
Fragments arranged by size:
4770 683 56
BtsI GCAGTG_nn'
Cuts at: 3025 3819 3839 3025
Size: 794 20 4695
Fragments arranged by size:
4695 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5509
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 2553 2588 529
Size: 35 1989 35 3450
Fragments arranged by size:
3450 1989 35 35
DraI TTT'AAA
Cuts at: 2813 2813
Size: 5509
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4516 809
Size: 507 3200 1802
Fragments arranged by size:
3200 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2956 3845 5474
Size: 54 1425 50 275 18 1126 889 1629
Cuts at: 5474 8
Size: 43
Fragments arranged by size:
1629 1425 1126 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2956 1537
Size: 275 1144 4090
Fragments arranged by size:
4090 1144 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2577 2640 2721 2753 3439 1353
Size: 1224 63 81 32 686 3423
Fragments arranged by size:
3423 1224 686 81 63 32
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4096 4470 4616 387
Size: 1064 138 2507 374 146 1280
Fragments arranged by size:
2507 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2178 2363 2660 3572 4169 4956 5224
Size: 393 546 185 297 912 597 787 268
Cuts at: 5224 1239
Size: 1524
Fragments arranged by size:
1524 912 787 597 546 393 297 268
185
EcoRI G'AATT_C
Cuts at: 2818 3196 2818
Size: 378 5131
FspI TGC'GCA
Cuts at: 4015 4015
Size: 5509
HaeII r_GCGC'y
Cuts at: 1678 2696 4656 1678
Size: 1018 1960 2531
Fragments arranged by size:
2531 1960 1018
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4150 4182 4224 4256 1373
Size: 32 135 32 2578 32 42 32 2626
Fragments arranged by size:
2626 2578 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2769 2853 3099 669
Size: 988 281 831 84 246 3079
Fragments arranged by size:
3079 988 831 281 246 84
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5509
HpaI GTT'AAC
Cuts at: 3099 3099
Size: 5509
KpnI G_GTAC'C
Cuts at: 2834 2834
Size: 5509
MfeI C'AATT_G
Cuts at: 3108 3108
Size: 5509
MluI A'CGCG_T
Cuts at: 5385 5385
Size: 5509
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4623 4807 1305
Size: 3318 184 2007
Fragments arranged by size:
3318 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3687
Fragments arranged by size:
3687 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3467 3826 3985 518
Size: 648 2301 359 159 2042
Fragments arranged by size:
2301 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2925 3602 4750 4995 1606
Size: 1319 677 1148 245 2120
Fragments arranged by size:
2120 1319 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4957
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5509
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5509
NotI GC'GGCC_GC
Cuts at: 2956 2956
Size: 5509
NsiI A_TGCA'T
Cuts at: 2607 2806 2607
Size: 199 5310
NspI r_CATG'y
Cuts at: 1132 1229 2767 2867 4412 1132
Size: 97 1538 100 1545 2229
Fragments arranged by size:
2229 1545 1538 100 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5509
PciI A'CATG_T
Cuts at: 4408 4408
Size: 5509
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5509
PmeI GTTT'AAAC
Cuts at: 2813 2813
Size: 5509
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3578 3610 5091 5123 3578
Size: 32 1481 32 3964
Fragments arranged by size:
3964 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5509
PsiI TTA'TAA
Cuts at: 3079 3079
Size: 5509
PstI C_TGCA'G
Cuts at: 830 2861 830
Size: 2031 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5509
SalI G'TCGA_C
Cuts at: 1936 2851 1936
Size: 915 4594
SapI GCTCTTCn'nnn_
Cuts at: 2721 2753 2721
Size: 32 5477
SbfI CC_TGCA'GG
Cuts at: 2861 2861
Size: 5509
ScaI AGT'ACT
Cuts at: 2628 3757 5469 2628
Size: 1129 1712 2668
Fragments arranged by size:
2668 1712 1129
SfcI C'TryA_G
Cuts at: 826 1045 2477 2857 3992 4673 4864 826
Size: 219 1432 380 1135 681 191 1471
Fragments arranged by size:
1471 1432 1135 681 380 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5509
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5509
SmaI CCC'GGG
Cuts at: 1872 2836 1872
Size: 964 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3613 4514 4776 820
Size: 197 926 1670 901 262 1553
Fragments arranged by size:
1670 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3300 493
Size: 2807 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5509
SphI G_CATG'C
Cuts at: 1132 2867 1132
Size: 1735 3774
SspI AAT'ATT
Cuts at: 5 52 2530 3433 5
Size: 47 2478 903 2081
Fragments arranged by size:
2478 2081 903 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5509
StyI C'CwwG_G
Cuts at: 513 1065 2948 513
Size: 552 1883 3074
Fragments arranged by size:
3074 1883 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2683 3536 3553 3706 3891 4336 325
Size: 1255 1103 853 17 153 185 445 1498
Fragments arranged by size:
1498 1255 1103 853 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2626 3755 5467
Size: 274 80 33 51 1443 649 1129 1712
Cuts at: 5467 96
Size: 138
Fragments arranged by size:
1712 1443 1129 649 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5469 5501 5469
Size: 32 5477
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5509
XbaI T'CTAG_A
Cuts at: 2845 2845
Size: 5509
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5509
XmaI C'CCGG_G
Cuts at: 1870 2834 1870
Size: 964 4545
XmnI GAAnn'nnTTC
Cuts at: 3638 3638
Size: 5509
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3317 276
Size: 53 83 186 936 1783 2468
Fragments arranged by size:
2468 1783 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI
BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NsiI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI
SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BbeI BbvCI
BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI
EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI PacI PfoI PmlI PpuMI PspOMI
PspXI PsrI PvuII RsrII SacI SacII SanDI SexAI
SfiI SfoI SrfI SwaI XcmI