Restriction map for
pFN21AE9605
(Circular) (Six-base) MAPSORT of: pFN21AE9605.seq Check: 7713 from: 1 to: 5368
pFN21AE9605 5368 bp
With 182 enzymes: SgfI *
March 28, 2012 12:17 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3178 278
Size: 53 83 186 936 1642 2468
Fragments arranged by size:
2468 1642 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2711 1937
Size: 774 4594
Acc65I G'GTAC_C
Cuts at: 2300 2689 2300
Size: 389 4979
AclI AA'CG_TT
Cuts at: 1563 3495 3868 1563
Size: 1932 373 3063
Fragments arranged by size:
3063 1932 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3431 4815 5083 1632
Size: 1799 1384 268 1917
Fragments arranged by size:
1917 1799 1384 268
AfeI AGC'GCT
Cuts at: 2202 2202
Size: 5368
AflII C'TTAA_G
Cuts at: 820 1017 2192 820
Size: 197 1175 3996
Fragments arranged by size:
3996 1175 197
AflIII A'CryG_T
Cuts at: 1203 4267 5244 1203
Size: 3064 977 1327
Fragments arranged by size:
3064 1327 977
AgeI A'CCGG_T
Cuts at: 2303 4199 2303
Size: 1896 3472
AhdI GACnn_n'nnGTC
Cuts at: 4097 4097
Size: 5368
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5368
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5368
AlwNI CAG_nnn'CTG
Cuts at: 2129 3111 4683 2129
Size: 982 1572 2814
Fragments arranged by size:
2814 1572 982
ApaLI G'TGCA_C
Cuts at: 3425 4581 3425
Size: 1156 4212
ApoI r'AATT_y
Cuts at: 1493 2677 2903 3055 5164 1493
Size: 1184 226 152 2109 1697
Fragments arranged by size:
2109 1697 1184 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3922 160
Size: 872 2890 1606
Fragments arranged by size:
2890 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5368
AvaI C'yCGr_G
Cuts at: 1870 1943 2693 1870
Size: 73 750 4545
Fragments arranged by size:
4545 750 73
AvrII C'CTAG_G
Cuts at: 2390 2390
Size: 5368
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2227 2260 2271 2304 2227
Size: 33 11 33 5291
Fragments arranged by size:
5291 33 33 11
BamHI G'GATC_C
Cuts at: 2698 3065 2698
Size: 367 5001
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2300 2435 2689 4144 618
Size: 325 217 627 513 135 254 1455 1842
Fragments arranged by size:
1842 1455 627 513 325 254 217 135
BanII G_rGCy'C
Cuts at: 1391 2687 1391
Size: 1296 4072
BbeI G_GCGC'C
Cuts at: 2439 2439
Size: 5368
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4397
BbvCI CC'TCA_GC
Cuts at: 2547 2547
Size: 5368
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3559 3593 1903
Size: 34 1622 34 3678
Fragments arranged by size:
3678 1622 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3260 4470 3260
Size: 1210 4158
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5368
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2372 3979 136
Size: 107 122 71 631 605 700 1607 1525
Fragments arranged by size:
1607 1525 700 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5363 5363
Size: 5368
BlpI GC'TnA_GC
Cuts at: 2785 2785
Size: 5368
Bme1580I G_kGCm'C
Cuts at: 1790 3429 4585 1790
Size: 1639 1156 2573
Fragments arranged by size:
2573 1639 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5368
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2117 3099 4057
Size: 416 53 83 399 24 700 982 958
Cuts at: 4057 442
Size: 1753
Fragments arranged by size:
1753 982 958 700 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5368
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 4028 1239
Size: 2789 2579
Bpu10I CC'TnA_GC
Cuts at: 2547 2577 2592 2547
Size: 30 15 5323
Fragments arranged by size:
5323 30 15
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2243 3493 4358 4656 2243
Size: 1250 865 298 2955
Fragments arranged by size:
2955 1250 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4031 882
Size: 617 2532 2219
Fragments arranged by size:
2532 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3159 493
Size: 711 1955 2702
Fragments arranged by size:
2702 1955 711
BsaBI GATnn'nnATC
Cuts at: 5362 5362
Size: 5368
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2436 3175 3557 4192
Size: 53 83 186 936 903 739 382 635
Cuts at: 4192 275
Size: 1451
Fragments arranged by size:
1451 936 903 739 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 2114 2303 3801 4199 4473 4620 5031 2114
Size: 189 1498 398 274 147 411 2451
Fragments arranged by size:
2451 1498 411 398 274 189 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5143
Fragments arranged by size:
5143 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5368
BseYI C'CCAG_C
Cuts at: 2096 2402 2501 4571 5067 2096
Size: 306 99 2070 496 2397
Fragments arranged by size:
2397 2070 496 306 99
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2025 2309 1163
Size: 573 289 284 4222
Fragments arranged by size:
4222 573 289 284
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2818 3579 4607 1540
Size: 275 186 817 761 1028 2301
Fragments arranged by size:
2301 1028 817 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3429 3514 4585 3429
Size: 85 1071 4212
Fragments arranged by size:
4212 1071 85
BsmI GAATG_Cn'
Cuts at: 2879 2972 2879
Size: 93 5275
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2687 3429 3514 4585 1391
Size: 399 897 742 85 1071 2174
Fragments arranged by size:
2174 1071 897 742 399 85
BspEI T'CCGG_A
Cuts at: 2114 5031 2114
Size: 2917 2451
BspHI T'CATG_A
Cuts at: 3257 4987 3257
Size: 1730 3638
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2723 844
Size: 1879 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3255 1394
Size: 429 1432 3507
Fragments arranged by size:
3507 1432 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3863 4037 65
Size: 1183 2615 174 1396
Fragments arranged by size:
2615 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2303 4012 4199 1700
Size: 110 493 1709 187 2869
Fragments arranged by size:
2869 1709 493 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5368
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5368
BssSI C'ACGA_G
Cuts at: 3428 4440 3428
Size: 1012 4356
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2498 794
Size: 1704 3664
BstBI TT'CG_AA
Cuts at: 4172 4172
Size: 5368
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5368
BstXI CCAn_nnnn'nTGG
Cuts at: 2149 2428 2515 2149
Size: 279 87 5002
Fragments arranged by size:
5002 279 87
BstYI r'GATC_y
Cuts at: 1972 2698 3065 3450 3467 4919 5005 5017 5363
Size: 726 367 385 17 1452 86 12 346
Cuts at: 5363 1972
Size: 1977
Fragments arranged by size:
1977 1452 726 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4816
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4629
Fragments arranged by size:
4629 683 56
BtsI GCAGTG_nn'
Cuts at: 2154 2884 3678 3698 2154
Size: 730 794 20 3824
Fragments arranged by size:
3824 794 730 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5368
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5333
DraI TTT'AAA
Cuts at: 2672 2672
Size: 5368
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4375 809
Size: 507 3059 1802
Fragments arranged by size:
3059 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2184 2517 2604
Size: 54 1425 50 275 18 354 333 87
Cuts at: 2604 2815 3704 5333 8
Size: 211 889 1629 43
Fragments arranged by size:
1629 1425 889 354 333 275 211 87
54 50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2815 1537
Size: 275 1003 4090
Fragments arranged by size:
4090 1003 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3298 1353
Size: 1945 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3955 4329 4475 387
Size: 1064 138 2366 374 146 1280
Fragments arranged by size:
2366 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3431 4028 4815 5083 1239
Size: 393 1799 597 787 268 1524
Fragments arranged by size:
1799 1524 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2677 3055 2677
Size: 378 4990
FspI TGC'GCA
Cuts at: 3874 3874
Size: 5368
HaeII r_GCGC'y
Cuts at: 1678 2204 2439 4515 1678
Size: 526 235 2076 2531
Fragments arranged by size:
2531 2076 526 235
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4009 4041 4083 4115 1373
Size: 32 135 32 2437 32 42 32 2626
Fragments arranged by size:
2626 2437 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2712 2958 669
Size: 988 281 774 246 3079
Fragments arranged by size:
3079 988 774 281 246
HindIII A'AGCT_T
Cuts at: 748 2249 748
Size: 1501 3867
HpaI GTT'AAC
Cuts at: 2958 2958
Size: 5368
KasI G'GCGC_C
Cuts at: 2435 2435
Size: 5368
KpnI G_GTAC'C
Cuts at: 2304 2693 2304
Size: 389 4979
MfeI C'AATT_G
Cuts at: 2967 2967
Size: 5368
MluI A'CGCG_T
Cuts at: 5244 5244
Size: 5368
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 1989 4482 4666 1305
Size: 684 2493 184 2007
Fragments arranged by size:
2493 2007 684 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2519 10
Size: 54 1425 343 687 2859
Fragments arranged by size:
2859 1425 687 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3326 3685 3844 518
Size: 648 2160 359 159 2042
Fragments arranged by size:
2160 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2172 2498 2784 3461 4609 4854 1606
Size: 566 326 286 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 566 326 286 245
NarI GG'CG_CC
Cuts at: 2436 2436
Size: 5368
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4816
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5368
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5368
NotI GC'GGCC_GC
Cuts at: 2815 2815
Size: 5368
NspI r_CATG'y
Cuts at: 1132 1229 2726 4271 1132
Size: 97 1497 1545 2229
Fragments arranged by size:
2229 1545 1497 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5368
PciI A'CATG_T
Cuts at: 4267 4267
Size: 5368
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5368
PmeI GTTT'AAAC
Cuts at: 2672 2672
Size: 5368
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3437 3469 4950 4982 3437
Size: 32 1481 32 3823
Fragments arranged by size:
3823 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5368
PsiI TTA'TAA
Cuts at: 2938 2938
Size: 5368
PstI C_TGCA'G
Cuts at: 830 2720 830
Size: 1890 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5368
SalI G'TCGA_C
Cuts at: 1936 2710 1936
Size: 774 4594
SbfI CC_TGCA'GG
Cuts at: 2720 2720
Size: 5368
ScaI AGT'ACT
Cuts at: 3616 5328 3616
Size: 1712 3656
SfcI C'TryA_G
Cuts at: 826 1045 2716 3851 4532 4723 826
Size: 219 1671 1135 681 191 1471
Fragments arranged by size:
1671 1471 1135 681 219 191
SfoI GGC'GCC
Cuts at: 2437 2437
Size: 5368
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5368
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5368
SmaI CCC'GGG
Cuts at: 1872 2695 1872
Size: 823 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2192 2258 3472 4373 4635 820
Size: 197 926 249 66 1214 901 262 1553
Fragments arranged by size:
1553 1214 926 901 262 249 197 66
SnaBI TAC'GTA
Cuts at: 493 3159 493
Size: 2666 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5368
SphI G_CATG'C
Cuts at: 1132 2726 1132
Size: 1594 3774
SspI AAT'ATT
Cuts at: 5 52 3292 5
Size: 47 3240 2081
Fragments arranged by size:
3240 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5368
StyI C'CwwG_G
Cuts at: 513 1065 2142 2361 2390 2598 2807 513
Size: 552 1077 219 29 208 209 3074
Fragments arranged by size:
3074 1077 552 219 209 208 29
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3395 3412 3565 3750 4195 325
Size: 1255 1815 17 153 185 445 1498
Fragments arranged by size:
1815 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3614 5326 96
Size: 274 80 33 51 1443 1637 1712 138
Fragments arranged by size:
1712 1637 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5328 5360 5328
Size: 32 5336
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5368
XbaI T'CTAG_A
Cuts at: 2704 2704
Size: 5368
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5368
XmaI C'CCGG_G
Cuts at: 1870 2693 1870
Size: 823 4545
XmnI GAAnn'nnTTC
Cuts at: 3497 3497
Size: 5368
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3176 276
Size: 53 83 186 936 1642 2468
Fragments arranged by size:
2468 1642 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AfeI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI AvrII BaeI BamHI BanI BanII BbeI
BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI
Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI
BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI
BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI
BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII
BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI
DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI
HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI
MluI MmeI MscI MslI MspA1I NarI NcoI NdeI
NheI NotI NspI PasI PciI PflMI PmeI PpiI
PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI
SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AloI ApaI AscI BfrBI BplI BsiWI BsmBI
BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI
FseI FspAI NaeI NgoMIV NruI NsiI PacI PfoI
PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI
SacII SanDI SapI SexAI SfiI SrfI SwaI XcmI