Restriction map for
pFN21AE9509
(Circular) (Six-base) MAPSORT of: pFN21AE9509.seq Check: 2530 from: 1 to: 5671
pFN21AE9509 5671 bp
With 182 enzymes: SgfI *
December 28, 2011 15:24 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3481 278
Size: 53 83 186 936 1945 2468
Fragments arranged by size:
2468 1945 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 3014 1937
Size: 1077 4594
Acc65I G'GTAC_C
Cuts at: 2391 2992 2391
Size: 601 5070
AclI AA'CG_TT
Cuts at: 1563 3798 4171 1563
Size: 2235 373 3063
Fragments arranged by size:
3063 2235 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2885 3734 5118 5386 1632
Size: 1253 849 1384 268 1917
Fragments arranged by size:
1917 1384 1253 849 268
AfeI AGC'GCT
Cuts at: 2363 2363
Size: 5671
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5474
AflIII A'CryG_T
Cuts at: 1203 4570 5547 1203
Size: 3367 977 1327
Fragments arranged by size:
3367 1327 977
AgeI A'CCGG_T
Cuts at: 4502 4502
Size: 5671
AhdI GACnn_n'nnGTC
Cuts at: 4400 4400
Size: 5671
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5671
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5671
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2171 2203 2465 2497 2171
Size: 32 262 32 5345
Fragments arranged by size:
5345 262 32 32
AlwNI CAG_nnn'CTG
Cuts at: 2086 2863 3414 4986 2086
Size: 777 551 1572 2771
Fragments arranged by size:
2771 1572 777 551
ApaI G_GGCC'C
Cuts at: 2449 2716 2449
Size: 267 5404
ApaLI G'TGCA_C
Cuts at: 3728 4884 3728
Size: 1156 4515
ApoI r'AATT_y
Cuts at: 1493 2980 3206 3358 5467 1493
Size: 1487 226 152 2109 1697
Fragments arranged by size:
2109 1697 1487 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4225 160
Size: 872 3193 1606
Fragments arranged by size:
3193 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5671
AvaI C'yCGr_G
Cuts at: 1870 1943 2996 1870
Size: 73 1053 4545
Fragments arranged by size:
4545 1053 73
BamHI G'GATC_C
Cuts at: 2618 2727 3001 3368 2618
Size: 109 274 367 4921
Fragments arranged by size:
4921 367 274 109
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2391 2992 4447 618
Size: 325 217 627 604 601 1455 1842
Fragments arranged by size:
1842 1455 627 604 601 325 217
BanII G_rGCy'C
Cuts at: 1391 2449 2716 2834 2887 2990 1391
Size: 1058 267 118 53 103 4072
Fragments arranged by size:
4072 1058 267 118 103 53
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2668 928
Size: 971 769 3931
Fragments arranged by size:
3931 971 769
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3862 3896 1903
Size: 34 1925 34 3678
Fragments arranged by size:
3678 1925 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2477 3563 4773 2477
Size: 1086 1210 3375
Fragments arranged by size:
3375 1210 1086
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5671
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4282 136
Size: 107 122 71 631 605 2610 1525
Fragments arranged by size:
2610 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5666 5666
Size: 5671
BlpI GC'TnA_GC
Cuts at: 2342 3088 2342
Size: 746 4925
Bme1580I G_kGCm'C
Cuts at: 1790 2449 2716 3732 4888 1790
Size: 659 267 1016 1156 2573
Fragments arranged by size:
2573 1156 1016 659 267
BmgBI CAC'GTC
Cuts at: 1318 2057 2106 1318
Size: 739 49 4883
Fragments arranged by size:
4883 739 49
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2015 3402 4360
Size: 416 53 83 399 24 598 1387 958
Cuts at: 4360 442
Size: 1753
Fragments arranged by size:
1753 1387 958 598 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5671
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2492 2861 2963 4331 1239
Size: 1253 369 102 1368 2579
Fragments arranged by size:
2579 1368 1253 369 102
Bpu10I CC'TnA_GC
Cuts at: 2087 2231 2333 2087
Size: 144 102 5425
Fragments arranged by size:
5425 144 102
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3796 4661 4959 3796
Size: 865 298 4508
Fragments arranged by size:
4508 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4334 882
Size: 617 2835 2219
Fragments arranged by size:
2835 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2650 3462 493
Size: 711 1446 812 2702
Fragments arranged by size:
2702 1446 812 711
BsaBI GATnn'nnATC
Cuts at: 5665 5665
Size: 5671
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3478 3860 4495 275
Size: 53 83 186 936 1945 382 635 1451
Fragments arranged by size:
1945 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 4104 4502 4776 4923 5334 4104
Size: 398 274 147 411 4441
Fragments arranged by size:
4441 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2171 2201 2465 2495 1178
Size: 30 165 30 768 30 264 30 4354
Fragments arranged by size:
4354 768 264 165 30 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2075 2651 2672 1186
Size: 889 576 21 4185
Fragments arranged by size:
4185 889 576 21
BseYI C'CCAG_C
Cuts at: 4874 5370 4874
Size: 496 5175
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 5098
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2217 3121 3882 4910 1540
Size: 275 186 216 904 761 1028 2301
Fragments arranged by size:
2301 1028 904 761 275 216 186
BsiHKAI G_wGCw'C
Cuts at: 2151 3732 3817 4888 2151
Size: 1581 85 1071 2934
Fragments arranged by size:
2934 1581 1071 85
BsmI GAATG_Cn'
Cuts at: 2703 3182 3275 2703
Size: 479 93 5099
Fragments arranged by size:
5099 479 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2151 2449 2716 2834 2887 2990 3732
Size: 399 361 298 267 118 53 103 742
Cuts at: 3732 3817 4888 1391
Size: 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 361 298 267 118
103 85 53
BspEI T'CCGG_A
Cuts at: 5334 5334
Size: 5671
BspHI T'CATG_A
Cuts at: 3560 5290 3560
Size: 1730 3941
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2959 3026 844
Size: 2115 67 3489
Fragments arranged by size:
3489 2115 67
BsrBI CCG'CTC
Cuts at: 1394 1823 2789 3558 1394
Size: 429 966 769 3507
Fragments arranged by size:
3507 966 769 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 4166 4340 65
Size: 1183 2918 174 1396
Fragments arranged by size:
2918 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4315 4502 1700
Size: 110 2505 187 2869
Fragments arranged by size:
2869 2505 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5671
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5671
BssSI C'ACGA_G
Cuts at: 3731 4743 3731
Size: 1012 4659
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5671
BstBI TT'CG_AA
Cuts at: 4475 4475
Size: 5671
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5671
BstYI r'GATC_y
Cuts at: 1972 2618 2727 3001 3368 3753 3770 5222 5308
Size: 646 109 274 367 385 17 1452 86
Cuts at: 5308 5320 5666 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 646 385 367 346 274 109
86 17 12
Bsu36I CC'TnA_GG
Cuts at: 2901 2931 2901
Size: 30 5641
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4180
Fragments arranged by size:
4180 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4932
Fragments arranged by size:
4932 683 56
BtsI GCAGTG_nn'
Cuts at: 2395 2806 3187 3981 4001 2395
Size: 411 381 794 20 4065
Fragments arranged by size:
4065 794 411 381 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5671
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 2720 2755 529
Size: 35 2156 35 3445
Fragments arranged by size:
3445 2156 35 35
DraI TTT'AAA
Cuts at: 2975 2975
Size: 5671
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4678 809
Size: 507 3362 1802
Fragments arranged by size:
3362 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2214 2236 3118
Size: 54 1425 50 275 18 384 22 882
Cuts at: 3118 4007 5636 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 882 384 275 54 50
43 22 18
EagI C'GGCC_G
Cuts at: 1537 1812 2214 3118 1537
Size: 275 402 904 4090
Fragments arranged by size:
4090 904 402 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2231 3601 1353
Size: 878 1370 3423
Fragments arranged by size:
3423 1370 878
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2264 4258 4632 4778 387
Size: 1064 138 675 1994 374 146 1280
Fragments arranged by size:
1994 1280 1064 675 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2492 2861 2885 2963 3734 4331 5118
Size: 393 860 369 24 78 771 597 787
Cuts at: 5118 5386 1239
Size: 268 1524
Fragments arranged by size:
1524 860 787 771 597 393 369 268
78 24
EcoO109I rG'GnC_Cy
Cuts at: 2446 2713 2446
Size: 267 5404
EcoRI G'AATT_C
Cuts at: 2980 3358 2980
Size: 378 5293
FspI TGC'GCA
Cuts at: 2174 4177 2174
Size: 2003 3668
HaeII r_GCGC'y
Cuts at: 1678 2349 2365 4818 1678
Size: 671 16 2453 2531
Fragments arranged by size:
2531 2453 671 16
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4312 4344 4386 4418 1373
Size: 32 135 32 2740 32 42 32 2626
Fragments arranged by size:
2740 2626 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 3015 3261 669
Size: 988 281 1077 246 3079
Fragments arranged by size:
3079 1077 988 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5671
HpaI GTT'AAC
Cuts at: 3261 3261
Size: 5671
KpnI G_GTAC'C
Cuts at: 2395 2996 2395
Size: 601 5070
MfeI C'AATT_G
Cuts at: 3270 3270
Size: 5671
MluI A'CGCG_T
Cuts at: 5547 5547
Size: 5671
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4785 4969 1305
Size: 3480 184 2007
Fragments arranged by size:
3480 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3849
Fragments arranged by size:
3849 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3629 3988 4147 518
Size: 648 2463 359 159 2042
Fragments arranged by size:
2463 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2635 3087 3764 4912 5157 1606
Size: 1029 452 677 1148 245 2120
Fragments arranged by size:
2120 1148 1029 677 452 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4180
Fragments arranged by size:
4180 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5671
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5671
NotI GC'GGCC_GC
Cuts at: 3118 3118
Size: 5671
NspI r_CATG'y
Cuts at: 1132 1229 2173 2341 3029 4574 1132
Size: 97 944 168 688 1545 2229
Fragments arranged by size:
2229 1545 944 688 168 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5671
PciI A'CATG_T
Cuts at: 4570 4570
Size: 5671
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2379 1108
Size: 1271 4400
PfoI T'CCnGG_A
Cuts at: 2469 2621 2723 2469
Size: 152 102 5417
Fragments arranged by size:
5417 152 102
PmeI GTTT'AAAC
Cuts at: 2975 2975
Size: 5671
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2171 2203 2465 2497 3740 3772 5253 5285 2171
Size: 32 262 32 1243 32 1481 32 2557
Fragments arranged by size:
2557 1481 1243 262 32 32 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5671
PsiI TTA'TAA
Cuts at: 3241 3241
Size: 5671
PspOMI G'GGCC_C
Cuts at: 2445 2712 2445
Size: 267 5404
PstI C_TGCA'G
Cuts at: 830 2892 3023 830
Size: 2062 131 3478
Fragments arranged by size:
3478 2062 131
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5671
SalI G'TCGA_C
Cuts at: 1936 3013 1936
Size: 1077 4594
SbfI CC_TGCA'GG
Cuts at: 3023 3023
Size: 5671
ScaI AGT'ACT
Cuts at: 3919 5631 3919
Size: 1712 3959
SexAI A'CCwGG_T
Cuts at: 2205 2205
Size: 5671
SfcI C'TryA_G
Cuts at: 826 1045 2888 3019 4154 4835 5026 826
Size: 219 1843 131 1135 681 191 1471
Fragments arranged by size:
1843 1471 1135 681 219 191 131
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5671
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5671
SmaI CCC'GGG
Cuts at: 1872 2998 1872
Size: 1126 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3775 4676 4938 820
Size: 197 926 1832 901 262 1553
Fragments arranged by size:
1832 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3462 493
Size: 2969 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5671
SphI G_CATG'C
Cuts at: 1132 2173 2341 3029 1132
Size: 1041 168 688 3774
Fragments arranged by size:
3774 1041 688 168
SspI AAT'ATT
Cuts at: 5 52 3595 5
Size: 47 3543 2081
Fragments arranged by size:
3543 2081 47
StuI AGG'CCT
Cuts at: 1517 2331 1517
Size: 814 4857
StyI C'CwwG_G
Cuts at: 513 1065 2004 3110 513
Size: 552 939 1106 3074
Fragments arranged by size:
3074 1106 939 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2413 3698 3715 3868 4053 4498 325
Size: 1255 833 1285 17 153 185 445 1498
Fragments arranged by size:
1498 1285 1255 833 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3917 5629 96
Size: 274 80 33 51 1443 1940 1712 138
Fragments arranged by size:
1940 1712 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2470 2502 2599 2631 5631 5663 2470
Size: 32 97 32 3000 32 2478
Fragments arranged by size:
3000 2478 97 32 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5671
XbaI T'CTAG_A
Cuts at: 3007 3007
Size: 5671
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2023 2731 2023
Size: 708 4963
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5671
XmaI C'CCGG_G
Cuts at: 1870 2996 1870
Size: 1126 4545
XmnI GAAnn'nnTTC
Cuts at: 3800 3800
Size: 5671
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3479 276
Size: 53 83 186 936 1945 2468
Fragments arranged by size:
2468 1945 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AfeI AflII AflIII
AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI
ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI
BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI
BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI
BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI
BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI
BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I
BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI
EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI
PspOMI PstI PvuI SalI SbfI ScaI SexAI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XcmI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AscI AvrII BaeI BbeI BbvCI BfrBI BplI
BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoNI EcoRV
FalI FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PmlI PpuMI PspXI PsrI PvuII RsrII
SacI SacII SanDI SapI SfiI SfoI SrfI SwaI