Restriction map for
pFN21AE6057
(Circular) (Six-base) MAPSORT of: pFN21AE6057.seq Check: 6054 from: 1 to: 5665
pFN21AE6057 5665 bp
With 182 enzymes: SgfI *
December 8, 2014 13:51 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2747 2747
Size: 5665
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3475 278
Size: 53 83 186 936 1939 2468
Fragments arranged by size:
2468 1939 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 3008 1937
Size: 1071 4594
Acc65I G'GTAC_C
Cuts at: 2986 2986
Size: 5665
AclI AA'CG_TT
Cuts at: 1563 3792 4165 1563
Size: 2229 373 3063
Fragments arranged by size:
3063 2229 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3728 5112 5380 1632
Size: 2096 1384 268 1917
Fragments arranged by size:
2096 1917 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5468
AflIII A'CryG_T
Cuts at: 1203 2342 4564 5541 1203
Size: 1139 2222 977 1327
Fragments arranged by size:
2222 1327 1139 977
AgeI A'CCGG_T
Cuts at: 4496 4496
Size: 5665
AhdI GACnn_n'nnGTC
Cuts at: 4394 4394
Size: 5665
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5665
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5665
AlwNI CAG_nnn'CTG
Cuts at: 2463 3408 4980 2463
Size: 945 1572 3148
Fragments arranged by size:
3148 1572 945
ApaLI G'TGCA_C
Cuts at: 3722 4878 3722
Size: 1156 4509
ApoI r'AATT_y
Cuts at: 1493 2974 3200 3352 5461 1493
Size: 1481 226 152 2109 1697
Fragments arranged by size:
2109 1697 1481 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4219 160
Size: 872 3187 1606
Fragments arranged by size:
3187 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5665
AvaI C'yCGr_G
Cuts at: 1870 1943 2990 1870
Size: 73 1047 4545
Fragments arranged by size:
4545 1047 73
BamHI G'GATC_C
Cuts at: 2995 3362 2995
Size: 367 5298
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2765 2986 4441 618
Size: 325 217 627 978 221 1455 1842
Fragments arranged by size:
1842 1455 978 627 325 221 217
BanII G_rGCy'C
Cuts at: 1391 2178 2984 1391
Size: 787 806 4072
Fragments arranged by size:
4072 806 787
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2041 928
Size: 971 142 4552
Fragments arranged by size:
4552 971 142
BbvCI CC'TCA_GC
Cuts at: 2294 2294
Size: 5665
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3856 3890 1903
Size: 34 1919 34 3678
Fragments arranged by size:
3678 1919 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3557 4767 3557
Size: 1210 4455
BclI T'GATC_A
Cuts at: 1548 2208 2557 1548
Size: 660 349 4656
Fragments arranged by size:
4656 660 349
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2168 2798 2807
Size: 107 122 71 631 605 496 630 9
Cuts at: 2807 4276 136
Size: 1469 1525
Fragments arranged by size:
1525 1469 631 630 605 496 122 107
71 9
BglII A'GATC_T
Cuts at: 5660 5660
Size: 5665
BlpI GC'TnA_GC
Cuts at: 3082 3082
Size: 5665
Bme1580I G_kGCm'C
Cuts at: 1790 2768 3726 4882 1790
Size: 978 958 1156 2573
Fragments arranged by size:
2573 1156 978 958
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5665
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3396 4354 442
Size: 416 53 83 399 24 1979 958 1753
Fragments arranged by size:
1979 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5665
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 4325 1239
Size: 3086 2579
Bpu10I CC'TnA_GC
Cuts at: 2294 2294
Size: 5665
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2922 3790 4655 4953 2922
Size: 868 865 298 3634
Fragments arranged by size:
3634 868 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2075 4328 882
Size: 617 576 2253 2219
Fragments arranged by size:
2253 2219 617 576
BsaAI yAC'GTr
Cuts at: 493 1204 2797 3456 493
Size: 711 1593 659 2702
Fragments arranged by size:
2702 1593 711 659
BsaBI GATnn'nnATC
Cuts at: 5659 5659
Size: 5665
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3472 3854 4489 275
Size: 53 83 186 936 1939 382 635 1451
Fragments arranged by size:
1939 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 4098 4496 4770 4917 5328 4098
Size: 398 274 147 411 4435
Fragments arranged by size:
4435 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5440
Fragments arranged by size:
5440 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2105 2468 1186
Size: 919 363 4383
Fragments arranged by size:
4383 919 363
BseYI C'CCAG_C
Cuts at: 2177 2491 4868 5364 2177
Size: 314 2377 496 2478
Fragments arranged by size:
2478 2377 496 314
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2393 1163
Size: 573 657 4435
Fragments arranged by size:
4435 657 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3115 3876 4904 1540
Size: 275 186 1114 761 1028 2301
Fragments arranged by size:
2301 1114 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3726 3811 4882 3726
Size: 85 1071 4509
Fragments arranged by size:
4509 1071 85
BsmI GAATG_Cn'
Cuts at: 3176 3269 3176
Size: 93 5572
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2178 2768 2984 3726 3811 4882 1391
Size: 399 388 590 216 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 590 399 388 216 85
BspEI T'CCGG_A
Cuts at: 5328 5328
Size: 5665
BspHI T'CATG_A
Cuts at: 2424 3554 5284 2424
Size: 1130 1730 2805
Fragments arranged by size:
2805 1730 1130
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2747 2823 3020 844
Size: 1903 76 197 3489
Fragments arranged by size:
3489 1903 197 76
BsrBI CCG'CTC
Cuts at: 1394 1823 3552 1394
Size: 429 1729 3507
Fragments arranged by size:
3507 1729 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2529 2848 4160 4334 65
Size: 1183 1281 319 1312 174 1396
Fragments arranged by size:
1396 1312 1281 1183 319 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4309 4496 1700
Size: 110 2499 187 2869
Fragments arranged by size:
2869 2499 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5665
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5665
BssSI C'ACGA_G
Cuts at: 3725 4737 3725
Size: 1012 4653
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2459 794
Size: 1665 4000
BstBI TT'CG_AA
Cuts at: 4469 4469
Size: 5665
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5665
BstYI r'GATC_y
Cuts at: 1972 2995 3362 3747 3764 5216 5302 5314 5660
Size: 1023 367 385 17 1452 86 12 346
Cuts at: 5660 1972
Size: 1977
Fragments arranged by size:
1977 1452 1023 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2163 2628 513
Size: 552 939 159 465 3550
Fragments arranged by size:
3550 939 552 465 159
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2608 487
Size: 683 56 1382 3544
Fragments arranged by size:
3544 1382 683 56
BtsI GCAGTG_nn'
Cuts at: 2405 2545 3181 3975 3995 2405
Size: 140 636 794 20 4075
Fragments arranged by size:
4075 794 636 140 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5665
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5630
DraI TTT'AAA
Cuts at: 2969 2969
Size: 5665
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4672 809
Size: 507 3356 1802
Fragments arranged by size:
3356 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2160 3112 4001
Size: 54 1425 50 275 18 330 952 889
Cuts at: 4001 5630 8
Size: 1629 43
Fragments arranged by size:
1629 1425 952 889 330 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 3112 1537
Size: 275 1300 4090
Fragments arranged by size:
4090 1300 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2123 2333 3595 1353
Size: 770 210 1262 3423
Fragments arranged by size:
3423 1262 770 210
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4252 4626 4772 387
Size: 1064 138 2663 374 146 1280
Fragments arranged by size:
2663 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3728 4325 5112 5380 1239
Size: 393 2096 597 787 268 1524
Fragments arranged by size:
2096 1524 787 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2505 2505
Size: 5665
EcoRI G'AATT_C
Cuts at: 2974 3352 2974
Size: 378 5287
FspI TGC'GCA
Cuts at: 4171 4171
Size: 5665
HaeII r_GCGC'y
Cuts at: 1678 4812 1678
Size: 3134 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4306 4338 4380 4412 1373
Size: 32 135 32 2734 32 42 32 2626
Fragments arranged by size:
2734 2626 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 3009 3255 669
Size: 988 281 1071 246 3079
Fragments arranged by size:
3079 1071 988 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5665
HpaI GTT'AAC
Cuts at: 3255 3255
Size: 5665
KpnI G_GTAC'C
Cuts at: 2990 2990
Size: 5665
MfeI C'AATT_G
Cuts at: 3264 3264
Size: 5665
MluI A'CGCG_T
Cuts at: 5541 5541
Size: 5665
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4779 4963 1305
Size: 3474 184 2007
Fragments arranged by size:
3474 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3843
Fragments arranged by size:
3843 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2135 2363 2627 2633 3623 3982 4141
Size: 648 969 228 264 6 990 359 159
Cuts at: 4141 518
Size: 2042
Fragments arranged by size:
2042 990 969 648 359 264 228 159
6
MspA1I CmG'CkG
Cuts at: 1606 3081 3758 4906 5151 1606
Size: 1475 677 1148 245 2120
Fragments arranged by size:
2120 1475 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 2628 513
Size: 552 939 624 3550
Fragments arranged by size:
3550 939 624 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5665
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5665
NotI GC'GGCC_GC
Cuts at: 3112 3112
Size: 5665
NspI r_CATG'y
Cuts at: 1132 1229 2346 3023 4568 1132
Size: 97 1117 677 1545 2229
Fragments arranged by size:
2229 1545 1117 677 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5665
PciI A'CATG_T
Cuts at: 2342 4564 2342
Size: 2222 3443
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2463 2683 2755 2836 1108
Size: 1355 220 72 81 3937
Fragments arranged by size:
3937 1355 220 81 72
PmeI GTTT'AAAC
Cuts at: 2969 2969
Size: 5665
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3734 3766 5247 5279 3734
Size: 32 1481 32 4120
Fragments arranged by size:
4120 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2505 2505
Size: 5665
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5665
PsiI TTA'TAA
Cuts at: 3235 3235
Size: 5665
PstI C_TGCA'G
Cuts at: 830 2319 2744 3017 830
Size: 1489 425 273 3478
Fragments arranged by size:
3478 1489 425 273
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5665
SalI G'TCGA_C
Cuts at: 1936 3007 1936
Size: 1071 4594
SbfI CC_TGCA'GG
Cuts at: 3017 3017
Size: 5665
ScaI AGT'ACT
Cuts at: 3913 5625 3913
Size: 1712 3953
SfcI C'TryA_G
Cuts at: 826 1045 2315 2740 2803 3013 4148 4829 5020
Size: 219 1270 425 63 210 1135 681 191
Cuts at: 5020 826
Size: 1471
Fragments arranged by size:
1471 1270 1135 681 425 219 210 191
63
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5665
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5665
SmaI CCC'GGG
Cuts at: 1872 2992 1872
Size: 1120 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2937 3769 4670 4932 820
Size: 197 926 994 832 901 262 1553
Fragments arranged by size:
1553 994 926 901 832 262 197
SnaBI TAC'GTA
Cuts at: 493 3456 493
Size: 2963 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5665
SphI G_CATG'C
Cuts at: 1132 3023 1132
Size: 1891 3774
SspI AAT'ATT
Cuts at: 5 52 3589 5
Size: 47 3537 2081
Fragments arranged by size:
3537 2081 47
StuI AGG'CCT
Cuts at: 1517 2579 1517
Size: 1062 4603
StyI C'CwwG_G
Cuts at: 513 1065 2004 2223 2448 2628 3104 513
Size: 552 939 219 225 180 476 3074
Fragments arranged by size:
3074 939 552 476 225 219 180
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2418 3692 3709 3862 4047 4492 325
Size: 1255 838 1274 17 153 185 445 1498
Fragments arranged by size:
1498 1274 1255 838 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2196 3911 5623
Size: 274 80 33 51 1443 219 1715 1712
Cuts at: 5623 96
Size: 138
Fragments arranged by size:
1715 1712 1443 274 219 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5625 5657 5625
Size: 32 5633
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5665
XbaI T'CTAG_A
Cuts at: 3001 3001
Size: 5665
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2446 2794 2446
Size: 348 5317
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5665
XmaI C'CCGG_G
Cuts at: 1870 2990 1870
Size: 1120 4545
XmnI GAAnn'nnTTC
Cuts at: 3794 3794
Size: 5665
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3473 276
Size: 53 83 186 936 1939 2468
Fragments arranged by size:
2468 1939 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI
SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI
BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI
EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI
PsrI PvuII RsrII SacI SacII SanDI SapI SexAI
SfiI SfoI SrfI SwaI