Restriction map for
pFN21AE4016
(Circular) (Six-base) MAPSORT of: pFN21AE4016.seq Check: 5730 from: 1 to: 5290
pFN21AE4016 5290 bp
With 182 enzymes: SgfI *
March 28, 2012 13:01 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3100 278
Size: 53 83 186 936 1564 2468
Fragments arranged by size:
2468 1564 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2633 1937
Size: 696 4594
Acc65I G'GTAC_C
Cuts at: 2611 2611
Size: 5290
AclI AA'CG_TT
Cuts at: 1563 3417 3790 1563
Size: 1854 373 3063
Fragments arranged by size:
3063 1854 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3353 4737 5005 1632
Size: 1721 1384 268 1917
Fragments arranged by size:
1917 1721 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5093
AflIII A'CryG_T
Cuts at: 1203 4189 5166 1203
Size: 2986 977 1327
Fragments arranged by size:
2986 1327 977
AgeI A'CCGG_T
Cuts at: 4121 4121
Size: 5290
AhdI GACnn_n'nnGTC
Cuts at: 4019 4019
Size: 5290
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5290
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2363 1184
Size: 1179 4111
AlwNI CAG_nnn'CTG
Cuts at: 3033 4605 3033
Size: 1572 3718
ApaLI G'TGCA_C
Cuts at: 3347 4503 3347
Size: 1156 4134
ApoI r'AATT_y
Cuts at: 1493 2528 2599 2825 2977 5086 1493
Size: 1035 71 226 152 2109 1697
Fragments arranged by size:
2109 1697 1035 226 152 71
AseI AT'TA_AT
Cuts at: 160 1032 3844 160
Size: 872 2812 1606
Fragments arranged by size:
2812 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5290
AvaI C'yCGr_G
Cuts at: 1870 1943 2013 2045 2615 1870
Size: 73 70 32 570 4545
Fragments arranged by size:
4545 570 73 70 32
BamHI G'GATC_C
Cuts at: 2620 2987 2620
Size: 367 4923
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2611 4066 618
Size: 325 217 627 824 1455 1842
Fragments arranged by size:
1842 1455 824 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2046 2609 1391
Size: 655 563 4072
Fragments arranged by size:
4072 655 563
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4319
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2413 2447 3481 3515 1903
Size: 34 476 34 1034 34 3678
Fragments arranged by size:
3678 1034 476 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3182 4392 3182
Size: 1210 4080
BclI T'GATC_A
Cuts at: 1548 2494 1548
Size: 946 4344
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3901 136
Size: 107 122 71 631 605 2229 1525
Fragments arranged by size:
2229 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2391 5285 2391
Size: 2894 2396
BlpI GC'TnA_GC
Cuts at: 2707 2707
Size: 5290
Bme1580I G_kGCm'C
Cuts at: 1790 3351 4507 1790
Size: 1561 1156 2573
Fragments arranged by size:
2573 1561 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5290
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2198 3021 3979
Size: 416 53 83 399 24 781 823 958
Cuts at: 3979 442
Size: 1753
Fragments arranged by size:
1753 958 823 781 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5290
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3950 1239
Size: 2711 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3415 4280 4578 3415
Size: 865 298 4127
Fragments arranged by size:
4127 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2057 3953 882
Size: 617 558 1896 2219
Fragments arranged by size:
2219 1896 617 558
BsaAI yAC'GTr
Cuts at: 493 1204 3081 493
Size: 711 1877 2702
Fragments arranged by size:
2702 1877 711
BsaBI GATnn'nnATC
Cuts at: 5284 5284
Size: 5290
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3097 3479 4114 275
Size: 53 83 186 936 1564 382 635 1451
Fragments arranged by size:
1564 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2196 3723 4121 4395 4542 4953 2196
Size: 1527 398 274 147 411 2533
Fragments arranged by size:
2533 1527 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5065
Fragments arranged by size:
5065 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2063 1186
Size: 877 4413
BseYI C'CCAG_C
Cuts at: 2458 4493 4989 2458
Size: 2035 496 2759
Fragments arranged by size:
2759 2035 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2333 1163
Size: 573 597 4120
Fragments arranged by size:
4120 597 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2740 3501 4529 1540
Size: 275 186 739 761 1028 2301
Fragments arranged by size:
2301 1028 761 739 275 186
BsiHKAI G_wGCw'C
Cuts at: 2046 3351 3436 4507 2046
Size: 1305 85 1071 2829
Fragments arranged by size:
2829 1305 1071 85
BsmI GAATG_Cn'
Cuts at: 2801 2894 2801
Size: 93 5197
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2046 2609 3351 3436 4507 1391
Size: 399 256 563 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 563 399 256 85
BspEI T'CCGG_A
Cuts at: 4953 4953
Size: 5290
BspHI T'CATG_A
Cuts at: 3179 4909 3179
Size: 1730 3560
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2645 844
Size: 1801 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3177 1394
Size: 429 1354 3507
Fragments arranged by size:
3507 1354 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3785 3959 65
Size: 1183 2537 174 1396
Fragments arranged by size:
2537 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2066 2103 3934 4121 1700
Size: 110 256 37 1831 187 2869
Fragments arranged by size:
2869 1831 256 187 110 37
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5290
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5290
BssSI C'ACGA_G
Cuts at: 3350 4362 3350
Size: 1012 4278
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5290
BstBI TT'CG_AA
Cuts at: 4094 4094
Size: 5290
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5290
BstYI r'GATC_y
Cuts at: 1972 2391 2620 2987 3372 3389 4841 4927 4939
Size: 419 229 367 385 17 1452 86 12
Cuts at: 4939 5285 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 419 385 367 346 229 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2245 513
Size: 552 939 241 3558
Fragments arranged by size:
3558 939 552 241
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2452 487
Size: 683 56 1226 3325
Fragments arranged by size:
3325 1226 683 56
BtsI GCAGTG_nn'
Cuts at: 2806 3600 3620 2806
Size: 794 20 4476
Fragments arranged by size:
4476 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5290
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5255
DraI TTT'AAA
Cuts at: 2594 2594
Size: 5290
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4297 809
Size: 507 2981 1802
Fragments arranged by size:
2981 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2737 3626 5255
Size: 54 1425 50 275 18 907 889 1629
Cuts at: 5255 8
Size: 43
Fragments arranged by size:
1629 1425 907 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2737 1537
Size: 275 925 4090
Fragments arranged by size:
4090 925 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2034 3220 1353
Size: 681 1186 3423
Fragments arranged by size:
3423 1186 681
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2264 3877 4251 4397 387
Size: 1064 138 675 1613 374 146 1280
Fragments arranged by size:
1613 1280 1064 675 374 146 138
EcoICRI GAG'CTC
Cuts at: 2044 2044
Size: 5290
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3353 3950 4737 5005 1239
Size: 393 1721 597 787 268 1524
Fragments arranged by size:
1721 1524 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2599 2977 2599
Size: 378 4912
FspI TGC'GCA
Cuts at: 3796 3796
Size: 5290
HaeII r_GCGC'y
Cuts at: 1678 4437 1678
Size: 2759 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2427 2459 3931 3963 4005
Size: 32 135 32 855 32 1472 32 42
Cuts at: 4005 4037 1373
Size: 32 2626
Fragments arranged by size:
2626 1472 855 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2634 2880 669
Size: 988 281 696 246 3079
Fragments arranged by size:
3079 988 696 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5290
HpaI GTT'AAC
Cuts at: 2880 2880
Size: 5290
KpnI G_GTAC'C
Cuts at: 2615 2615
Size: 5290
MfeI C'AATT_G
Cuts at: 2889 2889
Size: 5290
MluI A'CGCG_T
Cuts at: 5166 5166
Size: 5290
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2413 4404 4588 1305
Size: 1108 1991 184 2007
Fragments arranged by size:
2007 1991 1108 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3468
Fragments arranged by size:
3468 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3248 3607 3766 518
Size: 648 2082 359 159 2042
Fragments arranged by size:
2082 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2458 2706 3383 4531 4776 1606
Size: 852 248 677 1148 245 2120
Fragments arranged by size:
2120 1148 852 677 248 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3799
Fragments arranged by size:
3799 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5290
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5290
NotI GC'GGCC_GC
Cuts at: 2737 2737
Size: 5290
NspI r_CATG'y
Cuts at: 1132 1229 2648 4193 1132
Size: 97 1419 1545 2229
Fragments arranged by size:
2229 1545 1419 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5290
PciI A'CATG_T
Cuts at: 4189 4189
Size: 5290
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5290
PmeI GTTT'AAAC
Cuts at: 2594 2594
Size: 5290
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2251 2283 3359 3391 4872 4904 2251
Size: 32 1076 32 1481 32 2637
Fragments arranged by size:
2637 1481 1076 32 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5290
PsiI TTA'TAA
Cuts at: 2860 2860
Size: 5290
PspXI vC'TCGA_Gb
Cuts at: 2045 2045
Size: 5290
PstI C_TGCA'G
Cuts at: 830 2642 830
Size: 1812 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5290
PvuII CAG'CTG
Cuts at: 2458 2458
Size: 5290
SacI G_AGCT'C
Cuts at: 2046 2046
Size: 5290
SalI G'TCGA_C
Cuts at: 1936 2632 1936
Size: 696 4594
SapI GCTCTTCn'nnn_
Cuts at: 2034 2034
Size: 5290
SbfI CC_TGCA'GG
Cuts at: 2642 2642
Size: 5290
ScaI AGT'ACT
Cuts at: 3538 5250 3538
Size: 1712 3578
SexAI A'CCwGG_T
Cuts at: 2232 2232
Size: 5290
SfcI C'TryA_G
Cuts at: 826 1045 2098 2638 3773 4454 4645 826
Size: 219 1053 540 1135 681 191 1471
Fragments arranged by size:
1471 1135 1053 681 540 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5290
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5290
SmaI CCC'GGG
Cuts at: 1872 2617 1872
Size: 745 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2045 3394 4295 4557 820
Size: 197 926 102 1349 901 262 1553
Fragments arranged by size:
1553 1349 926 901 262 197 102
SnaBI TAC'GTA
Cuts at: 493 3081 493
Size: 2588 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5290
SphI G_CATG'C
Cuts at: 1132 2648 1132
Size: 1516 3774
SspI AAT'ATT
Cuts at: 5 52 3214 5
Size: 47 3162 2081
Fragments arranged by size:
3162 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5290
StyI C'CwwG_G
Cuts at: 513 1065 2004 2729 513
Size: 552 939 725 3074
Fragments arranged by size:
3074 939 725 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3317 3334 3487 3672 4117 325
Size: 1255 1737 17 153 185 445 1498
Fragments arranged by size:
1737 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3536 5248 96
Size: 274 80 33 51 1443 1559 1712 138
Fragments arranged by size:
1712 1559 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5250 5282 5250
Size: 32 5258
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5290
XbaI T'CTAG_A
Cuts at: 2626 2626
Size: 5290
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2185 2185
Size: 5290
XhoI C'TCGA_G
Cuts at: 1943 2045 1943
Size: 102 5188
XmaI C'CCGG_G
Cuts at: 1870 2615 1870
Size: 745 4545
XmnI GAAnn'nnTTC
Cuts at: 3419 3419
Size: 5290
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3098 276
Size: 53 83 186 936 1564 2468
Fragments arranged by size:
2468 1564 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI
DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI
EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI
MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI
NheI NotI NspI PasI PciI PflMI PmeI PpiI
PshAI PsiI PspXI PstI PvuI PvuII SacI SalI
SapI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I
Bsu36I DraIII EcoNI EcoO109I EcoRV FalI FseI FspAI
KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI
PmlI PpuMI PspOMI PsrI RsrII SacII SanDI SfiI
SfoI SrfI SwaI