Restriction map for
pFN21AE4006
(Circular) (Six-base) MAPSORT of: pFN21AE4006.seq Check: 558 from: 1 to: 5083
pFN21AE4006 5083 bp
With 182 enzymes: SgfI *
March 28, 2012 13:08 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2893 278
Size: 53 83 186 936 1357 2468
Fragments arranged by size:
2468 1357 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2426 1937
Size: 489 4594
Acc65I G'GTAC_C
Cuts at: 2404 2404
Size: 5083
AclI AA'CG_TT
Cuts at: 1563 3210 3583 1563
Size: 1647 373 3063
Fragments arranged by size:
3063 1647 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3146 4530 4798 1632
Size: 1514 1384 268 1917
Fragments arranged by size:
1917 1514 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4886
AflIII A'CryG_T
Cuts at: 1203 2164 3982 4959 1203
Size: 961 1818 977 1327
Fragments arranged by size:
1818 1327 977 961
AgeI A'CCGG_T
Cuts at: 3914 3914
Size: 5083
AhdI GACnn_n'nnGTC
Cuts at: 3812 3812
Size: 5083
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5083
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2393 1184
Size: 1209 3874
AlwNI CAG_nnn'CTG
Cuts at: 2147 2826 4398 2147
Size: 679 1572 2832
Fragments arranged by size:
2832 1572 679
ApaI G_GGCC'C
Cuts at: 2018 2018
Size: 5083
ApaLI G'TGCA_C
Cuts at: 3140 4296 3140
Size: 1156 3927
ApoI r'AATT_y
Cuts at: 1493 2392 2618 2770 4879 1493
Size: 899 226 152 2109 1697
Fragments arranged by size:
2109 1697 899 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3637 160
Size: 872 2605 1606
Fragments arranged by size:
2605 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5083
AvaI C'yCGr_G
Cuts at: 1870 1943 2018 2027 2115 2408 1870
Size: 73 75 9 88 293 4545
Fragments arranged by size:
4545 293 88 75 73 9
BamHI G'GATC_C
Cuts at: 2413 2780 2413
Size: 367 4716
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2404 3859 618
Size: 325 217 627 617 1455 1842
Fragments arranged by size:
1842 1455 627 617 325 217
BanII G_rGCy'C
Cuts at: 1391 2018 2274 2402 1391
Size: 627 256 128 4072
Fragments arranged by size:
4072 627 256 128
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4112
BbvCI CC'TCA_GC
Cuts at: 2366 2366
Size: 5083
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3274 3308 1903
Size: 34 1337 34 3678
Fragments arranged by size:
3678 1337 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2975 4185 2975
Size: 1210 3873
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5083
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3694 136
Size: 107 122 71 631 605 2022 1525
Fragments arranged by size:
2022 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5078 5078
Size: 5083
BlpI GC'TnA_GC
Cuts at: 2500 2500
Size: 5083
Bme1580I G_kGCm'C
Cuts at: 1790 2018 3144 4300 1790
Size: 228 1126 1156 2573
Fragments arranged by size:
2573 1156 1126 228
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5083
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2814 3772 442
Size: 416 53 83 399 24 1397 958 1753
Fragments arranged by size:
1753 1397 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5083
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2065 2360 3743 1239
Size: 826 295 1383 2579
Fragments arranged by size:
2579 1383 826 295
Bpu10I CC'TnA_GC
Cuts at: 2366 2366
Size: 5083
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3208 4073 4371 3208
Size: 865 298 3920
Fragments arranged by size:
3920 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2335 3746 882
Size: 617 836 1411 2219
Fragments arranged by size:
2219 1411 836 617
BsaAI yAC'GTr
Cuts at: 493 1204 2167 2874 493
Size: 711 963 707 2702
Fragments arranged by size:
2702 963 711 707
BsaBI GATnn'nnATC
Cuts at: 5077 5077
Size: 5083
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2112 2890 3272 3907
Size: 53 83 186 936 579 778 382 635
Cuts at: 3907 275
Size: 1451
Fragments arranged by size:
1451 936 778 635 579 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3516 3914 4188 4335 4746 3516
Size: 398 274 147 411 3853
Fragments arranged by size:
3853 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4858
Fragments arranged by size:
4858 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2243 2246 2249 2279 1186
Size: 1057 3 3 30 3990
Fragments arranged by size:
3990 1057 30 3 3
BseYI C'CCAG_C
Cuts at: 4286 4782 4286
Size: 496 4587
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4510
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2533 3294 4322 1540
Size: 275 186 532 761 1028 2301
Fragments arranged by size:
2301 1028 761 532 275 186
BsiHKAI G_wGCw'C
Cuts at: 3144 3229 4300 3144
Size: 85 1071 3927
Fragments arranged by size:
3927 1071 85
BsmI GAATG_Cn'
Cuts at: 2594 2687 2594
Size: 93 4990
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2018 2274 2402 3144 3229 4300 1391
Size: 399 228 256 128 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 256 228 128 85
BspEI T'CCGG_A
Cuts at: 4746 4746
Size: 5083
BspHI T'CATG_A
Cuts at: 2091 2972 4702 2091
Size: 881 1730 2472
Fragments arranged by size:
2472 1730 881
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2130 2371 2438 844
Size: 1286 241 67 3489
Fragments arranged by size:
3489 1286 241 67
BsrBI CCG'CTC
Cuts at: 1394 1823 2305 2970 1394
Size: 429 482 665 3507
Fragments arranged by size:
3507 665 482 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3578 3752 65
Size: 1183 2330 174 1396
Fragments arranged by size:
2330 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3727 3914 1700
Size: 110 1917 187 2869
Fragments arranged by size:
2869 1917 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5083
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5083
BssSI C'ACGA_G
Cuts at: 3143 4155 3143
Size: 1012 4071
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2245 794
Size: 1451 3632
BstBI TT'CG_AA
Cuts at: 3887 3887
Size: 5083
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5083
BstYI r'GATC_y
Cuts at: 1972 2413 2780 3165 3182 4634 4720 4732 5078
Size: 441 367 385 17 1452 86 12 346
Cuts at: 5078 1972
Size: 1977
Fragments arranged by size:
1977 1452 441 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2277 2277
Size: 5083
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3592
Fragments arranged by size:
3592 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2336 487
Size: 683 56 1110 3234
Fragments arranged by size:
3234 1110 683 56
BtsI GCAGTG_nn'
Cuts at: 2157 2315 2599 3393 3413 2157
Size: 158 284 794 20 3827
Fragments arranged by size:
3827 794 284 158 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5083
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5048
DraI TTT'AAA
Cuts at: 2387 2387
Size: 5083
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4090 809
Size: 507 2774 1802
Fragments arranged by size:
2774 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2128 2530 3419
Size: 54 1425 50 275 18 298 402 889
Cuts at: 3419 5048 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 402 298 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2530 1537
Size: 275 718 4090
Fragments arranged by size:
4090 718 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3013 1353
Size: 1660 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3670 4044 4190 387
Size: 1064 138 2081 374 146 1280
Fragments arranged by size:
2081 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2065 2360 3146 3743 4530 4798 1239
Size: 393 433 295 786 597 787 268 1524
Fragments arranged by size:
1524 787 786 597 433 393 295 268
EcoNI CCTnn'n_nnAGG
Cuts at: 2249 2249
Size: 5083
EcoO109I rG'GnC_Cy
Cuts at: 2015 2119 2015
Size: 104 4979
EcoRI G'AATT_C
Cuts at: 2392 2770 2392
Size: 378 4705
FspI TGC'GCA
Cuts at: 3589 3589
Size: 5083
HaeII r_GCGC'y
Cuts at: 1678 2057 4230 1678
Size: 379 2173 2531
Fragments arranged by size:
2531 2173 379
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3724 3756 3798 3830 1373
Size: 32 135 32 2152 32 42 32 2626
Fragments arranged by size:
2626 2152 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2427 2673 669
Size: 988 281 489 246 3079
Fragments arranged by size:
3079 988 489 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5083
HpaI GTT'AAC
Cuts at: 2673 2673
Size: 5083
KpnI G_GTAC'C
Cuts at: 2408 2408
Size: 5083
MfeI C'AATT_G
Cuts at: 2682 2682
Size: 5083
MluI A'CGCG_T
Cuts at: 4959 4959
Size: 5083
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4197 4381 1305
Size: 2892 184 2007
Fragments arranged by size:
2892 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2130 10
Size: 54 1425 343 298 2963
Fragments arranged by size:
2963 1425 343 298 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3041 3400 3559 518
Size: 648 1875 359 159 2042
Fragments arranged by size:
2042 1875 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2147 2499 3176 4324 4569 1606
Size: 541 352 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 541 352 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3592
Fragments arranged by size:
3592 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5083
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5083
NotI GC'GGCC_GC
Cuts at: 2530 2530
Size: 5083
NspI r_CATG'y
Cuts at: 1132 1229 2374 2441 3986 1132
Size: 97 1145 67 1545 2229
Fragments arranged by size:
2229 1545 1145 97 67
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5083
PciI A'CATG_T
Cuts at: 3982 3982
Size: 5083
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5083
PmeI GTTT'AAAC
Cuts at: 2387 2387
Size: 5083
PmlI CAC'GTG
Cuts at: 2167 2167
Size: 5083
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3152 3184 4665 4697 3152
Size: 32 1481 32 3538
Fragments arranged by size:
3538 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2119 2119
Size: 5083
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5083
PsiI TTA'TAA
Cuts at: 2653 2653
Size: 5083
PspOMI G'GGCC_C
Cuts at: 2014 2014
Size: 5083
PstI C_TGCA'G
Cuts at: 830 2152 2250 2325 2382 2435 830
Size: 1322 98 75 57 53 3478
Fragments arranged by size:
3478 1322 98 75 57 53
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5083
PvuII CAG'CTG
Cuts at: 2147 2147
Size: 5083
SalI G'TCGA_C
Cuts at: 1936 2425 1936
Size: 489 4594
SbfI CC_TGCA'GG
Cuts at: 2250 2435 2250
Size: 185 4898
ScaI AGT'ACT
Cuts at: 3331 5043 3331
Size: 1712 3371
SfcI C'TryA_G
Cuts at: 826 1045 2148 2246 2321 2378 2431 3566 4247
Size: 219 1103 98 75 57 53 1135 681
Cuts at: 4247 4438 826
Size: 191 1471
Fragments arranged by size:
1471 1135 1103 681 219 191 98 75
57 53
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5083
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5083
SmaI CCC'GGG
Cuts at: 1872 2117 2410 1872
Size: 245 293 4545
Fragments arranged by size:
4545 293 245
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3187 4088 4350 820
Size: 197 926 1244 901 262 1553
Fragments arranged by size:
1553 1244 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2874 493
Size: 2381 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5083
SphI G_CATG'C
Cuts at: 1132 2374 2441 1132
Size: 1242 67 3774
Fragments arranged by size:
3774 1242 67
SspI AAT'ATT
Cuts at: 5 52 3007 5
Size: 47 2955 2081
Fragments arranged by size:
2955 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5083
StyI C'CwwG_G
Cuts at: 513 1065 2004 2522 513
Size: 552 939 518 3074
Fragments arranged by size:
3074 939 552 518
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2210 3110 3127 3280 3465 3910 325
Size: 1255 630 900 17 153 185 445 1498
Fragments arranged by size:
1498 1255 900 630 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3329 5041 96
Size: 274 80 33 51 1443 1352 1712 138
Fragments arranged by size:
1712 1443 1352 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5043 5075 5043
Size: 32 5051
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5083
XbaI T'CTAG_A
Cuts at: 2419 2419
Size: 5083
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5083
XmaI C'CCGG_G
Cuts at: 1870 2115 2408 1870
Size: 245 293 4545
Fragments arranged by size:
4545 293 245
XmnI GAAnn'nnTTC
Cuts at: 3212 3212
Size: 5083
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2891 276
Size: 53 83 186 936 1357 2468
Fragments arranged by size:
2468 1357 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI
BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI
EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PmeI PmlI PpiI PpuMI PshAI
PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI
BplI BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoRV
FalI FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PfoI PspXI PsrI RsrII SacI SacII
SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI