Restriction map for
pFN21AE3078
(Circular) (Six-base) MAPSORT of: pFN21AE3078.seq Check: 7643 from: 1 to: 5419
pFN21AE3078 5419 bp
With 182 enzymes: SgfI *
July 6, 2012 17:34 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3229 278
Size: 53 83 186 936 1693 2468
Fragments arranged by size:
2468 1693 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2463 2762 1937
Size: 526 299 4594
Fragments arranged by size:
4594 526 299
Acc65I G'GTAC_C
Cuts at: 2740 2740
Size: 5419
AclI AA'CG_TT
Cuts at: 1563 3546 3919 1563
Size: 1983 373 3063
Fragments arranged by size:
3063 1983 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2059 2566 2672 3482 4866 5134 1632
Size: 427 507 106 810 1384 268 1917
Fragments arranged by size:
1917 1384 810 507 427 268 106
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5222
AflIII A'CryG_T
Cuts at: 1203 4318 5295 1203
Size: 3115 977 1327
Fragments arranged by size:
3115 1327 977
AgeI A'CCGG_T
Cuts at: 4250 4250
Size: 5419
AhdI GACnn_n'nnGTC
Cuts at: 4148 4148
Size: 5419
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5419
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5419
AlwNI CAG_nnn'CTG
Cuts at: 2650 2683 3162 4734 2650
Size: 33 479 1572 3335
Fragments arranged by size:
3335 1572 479 33
ApaI G_GGCC'C
Cuts at: 2523 2523
Size: 5419
ApaLI G'TGCA_C
Cuts at: 3476 4632 3476
Size: 1156 4263
ApoI r'AATT_y
Cuts at: 1493 2224 2296 2602 2728 2954 3106 5215 1493
Size: 731 72 306 126 226 152 2109 1697
Fragments arranged by size:
2109 1697 731 306 226 152 126 72
AseI AT'TA_AT
Cuts at: 160 1032 3973 160
Size: 872 2941 1606
Fragments arranged by size:
2941 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5419
AvaI C'yCGr_G
Cuts at: 1870 1943 2744 1870
Size: 73 801 4545
Fragments arranged by size:
4545 801 73
BamHI G'GATC_C
Cuts at: 2749 3116 2749
Size: 367 5052
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2740 4195 618
Size: 325 217 627 953 1455 1842
Fragments arranged by size:
1842 1455 953 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2417 2523 2738 1391
Size: 1026 106 215 4072
Fragments arranged by size:
4072 1026 215 106
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2460 928
Size: 971 561 3887
Fragments arranged by size:
3887 971 561
BbvCI CC'TCA_GC
Cuts at: 2150 2150
Size: 5419
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3610 3644 1903
Size: 34 1673 34 3678
Fragments arranged by size:
3678 1673 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3311 4521 3311
Size: 1210 4209
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5419
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4030 136
Size: 107 122 71 631 605 2358 1525
Fragments arranged by size:
2358 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5414 5414
Size: 5419
BlpI GC'TnA_GC
Cuts at: 2836 2836
Size: 5419
Bme1580I G_kGCm'C
Cuts at: 1790 2523 3480 4636 1790
Size: 733 957 1156 2573
Fragments arranged by size:
2573 1156 957 733
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5419
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2310 3150 4108
Size: 416 53 83 399 24 893 840 958
Cuts at: 4108 442
Size: 1753
Fragments arranged by size:
1753 958 893 840 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5419
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2048 4079 1239
Size: 809 2031 2579
Fragments arranged by size:
2579 2031 809
Bpu10I CC'TnA_GC
Cuts at: 2150 2150
Size: 5419
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3544 4409 4707 3544
Size: 865 298 4256
Fragments arranged by size:
4256 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4082 882
Size: 617 2583 2219
Fragments arranged by size:
2583 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3210 493
Size: 711 2006 2702
Fragments arranged by size:
2702 2006 711
BsaBI GATnn'nnATC
Cuts at: 5413 5413
Size: 5419
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2037 3226 3608 4243
Size: 53 83 186 936 504 1189 382 635
Cuts at: 4243 275
Size: 1451
Fragments arranged by size:
1451 1189 936 635 504 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3852 4250 4524 4671 5082 3852
Size: 398 274 147 411 4189
Fragments arranged by size:
4189 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5194
Fragments arranged by size:
5194 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2045 2174 1186
Size: 859 129 4431
Fragments arranged by size:
4431 859 129
BseYI C'CCAG_C
Cuts at: 4622 5118 4622
Size: 496 4923
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4846
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2869 3630 4658 1540
Size: 275 186 868 761 1028 2301
Fragments arranged by size:
2301 1028 868 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3480 3565 4636 3480
Size: 85 1071 4263
Fragments arranged by size:
4263 1071 85
BsmI GAATG_Cn'
Cuts at: 2930 3023 2930
Size: 93 5326
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2417 2523 2738 3480 3565 4636 1391
Size: 399 627 106 215 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 627 399 215 106 85
BspEI T'CCGG_A
Cuts at: 5082 5082
Size: 5419
BspHI T'CATG_A
Cuts at: 3308 5038 3308
Size: 1730 3689
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2511 2774 844
Size: 1667 263 3489
Fragments arranged by size:
3489 1667 263
BsrBI CCG'CTC
Cuts at: 1394 1823 2103 3306 1394
Size: 429 280 1203 3507
Fragments arranged by size:
3507 1203 429 280
BsrDI GCAATG_nn'
Cuts at: 65 1248 2329 3914 4088 65
Size: 1183 1081 1585 174 1396
Fragments arranged by size:
1585 1396 1183 1081 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4063 4250 1700
Size: 110 2253 187 2869
Fragments arranged by size:
2869 2253 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5419
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5419
BssSI C'ACGA_G
Cuts at: 2402 3479 4491 2402
Size: 1077 1012 3330
Fragments arranged by size:
3330 1077 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5419
BstBI TT'CG_AA
Cuts at: 4223 4223
Size: 5419
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5419
BstYI r'GATC_y
Cuts at: 1972 2749 3116 3501 3518 4970 5056 5068 5414
Size: 777 367 385 17 1452 86 12 346
Cuts at: 5414 1972
Size: 1977
Fragments arranged by size:
1977 1452 777 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4867
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4680
Fragments arranged by size:
4680 683 56
BtsI GCAGTG_nn'
Cuts at: 2935 3729 3749 2935
Size: 794 20 4605
Fragments arranged by size:
4605 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5419
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5384
DraI TTT'AAA
Cuts at: 2723 2723
Size: 5419
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4426 809
Size: 507 3110 1802
Fragments arranged by size:
3110 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2107 2866 3755
Size: 54 1425 50 275 18 277 759 889
Cuts at: 3755 5384 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 759 277 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2866 1537
Size: 275 1054 4090
Fragments arranged by size:
4090 1054 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2648 3349 1353
Size: 1295 701 3423
Fragments arranged by size:
3423 1295 701
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4006 4380 4526 387
Size: 1064 138 2417 374 146 1280
Fragments arranged by size:
2417 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2048 2059 2566 2672 3482 4079 4866
Size: 393 416 11 507 106 810 597 787
Cuts at: 4866 5134 1239
Size: 268 1524
Fragments arranged by size:
1524 810 787 597 507 416 393 268
106 11
EcoNI CCTnn'n_nnAGG
Cuts at: 2030 2074 2699 2030
Size: 44 625 4750
Fragments arranged by size:
4750 625 44
EcoO109I rG'GnC_Cy
Cuts at: 2064 2383 2519 2064
Size: 319 136 4964
Fragments arranged by size:
4964 319 136
EcoRI G'AATT_C
Cuts at: 2224 2728 3106 2224
Size: 504 378 4537
Fragments arranged by size:
4537 504 378
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2236 2236
Size: 5419
FspI TGC'GCA
Cuts at: 2612 3925 2612
Size: 1313 4106
HaeII r_GCGC'y
Cuts at: 1678 2087 2662 4566 1678
Size: 409 575 1904 2531
Fragments arranged by size:
2531 1904 575 409
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4060 4092 4134 4166 1373
Size: 32 135 32 2488 32 42 32 2626
Fragments arranged by size:
2626 2488 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2763 3009 669
Size: 988 281 825 246 3079
Fragments arranged by size:
3079 988 825 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5419
HpaI GTT'AAC
Cuts at: 3009 3009
Size: 5419
KpnI G_GTAC'C
Cuts at: 2744 2744
Size: 5419
MfeI C'AATT_G
Cuts at: 3018 3018
Size: 5419
MluI A'CGCG_T
Cuts at: 5295 5295
Size: 5419
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4533 4717 1305
Size: 3228 184 2007
Fragments arranged by size:
3228 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3597
Fragments arranged by size:
3597 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3377 3736 3895 518
Size: 648 2211 359 159 2042
Fragments arranged by size:
2211 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2013 2641 2835 3512 4660 4905 1606
Size: 407 628 194 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 628 407 245 194
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4867
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5419
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5419
NotI GC'GGCC_GC
Cuts at: 2866 2866
Size: 5419
NspI r_CATG'y
Cuts at: 1132 1229 2777 4322 1132
Size: 97 1548 1545 2229
Fragments arranged by size:
2229 1548 1545 97
PasI CC'CwG_GG
Cuts at: 1348 2089 1348
Size: 741 4678
PciI A'CATG_T
Cuts at: 4318 4318
Size: 5419
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2300 1108
Size: 1192 4227
PmeI GTTT'AAAC
Cuts at: 2723 2723
Size: 5419
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2481 2513 3488 3520 5001 5033 2481
Size: 32 975 32 1481 32 2867
Fragments arranged by size:
2867 1481 975 32 32 32
PpuMI rG'GwC_Cy
Cuts at: 2064 2064
Size: 5419
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5419
PsiI TTA'TAA
Cuts at: 2436 2989 2436
Size: 553 4866
PspOMI G'GGCC_C
Cuts at: 2519 2519
Size: 5419
PstI C_TGCA'G
Cuts at: 830 2646 2771 830
Size: 1816 125 3478
Fragments arranged by size:
3478 1816 125
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5419
PvuII CAG'CTG
Cuts at: 2641 2641
Size: 5419
SalI G'TCGA_C
Cuts at: 1936 2761 1936
Size: 825 4594
SbfI CC_TGCA'GG
Cuts at: 2771 2771
Size: 5419
ScaI AGT'ACT
Cuts at: 3667 5379 3667
Size: 1712 3707
SfcI C'TryA_G
Cuts at: 826 1045 2017 2597 2642 2671 2767 3902 4583
Size: 219 972 580 45 29 96 1135 681
Cuts at: 4583 4774 826
Size: 191 1471
Fragments arranged by size:
1471 1135 972 681 580 219 191 96
45 29
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5419
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5419
SmaI CCC'GGG
Cuts at: 1872 2746 1872
Size: 874 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3523 4424 4686 820
Size: 197 926 1580 901 262 1553
Fragments arranged by size:
1580 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3210 493
Size: 2717 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5419
SphI G_CATG'C
Cuts at: 1132 2777 1132
Size: 1645 3774
SspI AAT'ATT
Cuts at: 5 52 3343 5
Size: 47 3291 2081
Fragments arranged by size:
3291 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5419
StyI C'CwwG_G
Cuts at: 513 1065 2858 513
Size: 552 1793 3074
Fragments arranged by size:
3074 1793 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3446 3463 3616 3801 4246 325
Size: 1255 1866 17 153 185 445 1498
Fragments arranged by size:
1866 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2257 3665 5377
Size: 274 80 33 51 1443 280 1408 1712
Cuts at: 5377 96
Size: 138
Fragments arranged by size:
1712 1443 1408 280 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5379 5411 5379
Size: 32 5387
Tth111I GACn'n_nGTC
Cuts at: 1316 2459 1316
Size: 1143 4276
XbaI T'CTAG_A
Cuts at: 2755 2755
Size: 5419
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5419
XmaI C'CCGG_G
Cuts at: 1870 2744 1870
Size: 874 4545
XmnI GAAnn'nnTTC
Cuts at: 3548 3548
Size: 5419
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3227 276
Size: 53 83 186 936 1693 2468
Fragments arranged by size:
2468 1693 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI
PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI
BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI
EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PfoI PmlI PspXI PsrI RsrII SacI
SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI
XcmI