Restriction map for
pFN21AE3068
(Circular) (Six-base) MAPSORT of: pFN21AE3068.seq Check: 8898 from: 1 to: 5377
pFN21AE3068 5377 bp
With 182 enzymes: SgfI *
March 28, 2012 13:25 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3187 278
Size: 53 83 186 936 1651 2468
Fragments arranged by size:
2468 1651 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2720 1937
Size: 783 4594
Acc65I G'GTAC_C
Cuts at: 2698 2698
Size: 5377
AclI AA'CG_TT
Cuts at: 1563 3504 3877 1563
Size: 1941 373 3063
Fragments arranged by size:
3063 1941 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2074 3440 4824 5092 1632
Size: 442 1366 1384 268 1917
Fragments arranged by size:
1917 1384 1366 442 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5180
AflIII A'CryG_T
Cuts at: 1203 2364 4276 5253 1203
Size: 1161 1912 977 1327
Fragments arranged by size:
1912 1327 1161 977
AgeI A'CCGG_T
Cuts at: 4208 4208
Size: 5377
AhdI GACnn_n'nnGTC
Cuts at: 4106 4106
Size: 5377
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5377
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5377
AlwNI CAG_nnn'CTG
Cuts at: 3120 4692 3120
Size: 1572 3805
ApaI G_GGCC'C
Cuts at: 2243 2243
Size: 5377
ApaLI G'TGCA_C
Cuts at: 2421 3434 4590 2421
Size: 1013 1156 3208
Fragments arranged by size:
3208 1156 1013
ApoI r'AATT_y
Cuts at: 1493 2396 2409 2686 2912 3064 5173 1493
Size: 903 13 277 226 152 2109 1697
Fragments arranged by size:
2109 1697 903 277 226 152 13
AseI AT'TA_AT
Cuts at: 160 1032 3931 160
Size: 872 2899 1606
Fragments arranged by size:
2899 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5377
AvaI C'yCGr_G
Cuts at: 1870 1943 2702 1870
Size: 73 759 4545
Fragments arranged by size:
4545 759 73
BamHI G'GATC_C
Cuts at: 2707 3074 2707
Size: 367 5010
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2698 4153 618
Size: 325 217 627 911 1455 1842
Fragments arranged by size:
1842 1455 911 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2243 2696 1391
Size: 852 453 4072
Fragments arranged by size:
4072 852 453
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2265 2536 928
Size: 971 366 271 3769
Fragments arranged by size:
3769 971 366 271
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3568 3602 1903
Size: 34 1631 34 3678
Fragments arranged by size:
3678 1631 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3269 4479 3269
Size: 1210 4167
BclI T'GATC_A
Cuts at: 1548 2268 1548
Size: 720 4657
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2119 3988 136
Size: 107 122 71 631 605 447 1869 1525
Fragments arranged by size:
1869 1525 631 605 447 122 107 71
BglII A'GATC_T
Cuts at: 5372 5372
Size: 5377
BlpI GC'TnA_GC
Cuts at: 2794 2794
Size: 5377
Bme1580I G_kGCm'C
Cuts at: 1790 2243 2425 3438 4594 1790
Size: 453 182 1013 1156 2573
Fragments arranged by size:
2573 1156 1013 453 182
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5377
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2531 3108 4066
Size: 416 53 83 399 24 1114 577 958
Cuts at: 4066 442
Size: 1753
Fragments arranged by size:
1753 1114 958 577 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5377
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2394 2663 4037 1239
Size: 1155 269 1374 2579
Fragments arranged by size:
2579 1374 1155 269
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3502 4367 4665 3502
Size: 865 298 4214
Fragments arranged by size:
4214 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4040 882
Size: 617 2541 2219
Fragments arranged by size:
2541 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3168 493
Size: 711 1964 2702
Fragments arranged by size:
2702 1964 711
BsaBI GATnn'nnATC
Cuts at: 5371 5371
Size: 5377
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3184 3566 4201 275
Size: 53 83 186 936 1651 382 635 1451
Fragments arranged by size:
1651 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3810 4208 4482 4629 5040 3810
Size: 398 274 147 411 4147
Fragments arranged by size:
4147 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5152
Fragments arranged by size:
5152 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5377
BseYI C'CCAG_C
Cuts at: 2188 2344 2538 4580 5076 2188
Size: 156 194 2042 496 2489
Fragments arranged by size:
2489 2042 496 194 156
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4804
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2827 3588 4616 1540
Size: 275 186 826 761 1028 2301
Fragments arranged by size:
2301 1028 826 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2425 3438 3523 4594 2425
Size: 1013 85 1071 3208
Fragments arranged by size:
3208 1071 1013 85
BsmI GAATG_Cn'
Cuts at: 2888 2981 2888
Size: 93 5284
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2243 2425 2696 3438 3523 4594 1391
Size: 399 453 182 271 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 453 399 271 182 85
BspEI T'CCGG_A
Cuts at: 5040 5040
Size: 5377
BspHI T'CATG_A
Cuts at: 2271 3266 4996 2271
Size: 995 1730 2652
Fragments arranged by size:
2652 1730 995
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2732 844
Size: 1888 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3264 1394
Size: 429 1441 3507
Fragments arranged by size:
3507 1441 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3872 4046 65
Size: 1183 2624 174 1396
Fragments arranged by size:
2624 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4021 4208 1700
Size: 110 2211 187 2869
Fragments arranged by size:
2869 2211 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5377
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5377
BssSI C'ACGA_G
Cuts at: 3437 4449 3437
Size: 1012 4365
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5377
BstBI TT'CG_AA
Cuts at: 2074 4181 2074
Size: 2107 3270
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5377
BstXI CCAn_nnnn'nTGG
Cuts at: 2236 2236
Size: 5377
BstYI r'GATC_y
Cuts at: 1972 2145 2707 3074 3459 3476 4928 5014 5026
Size: 173 562 367 385 17 1452 86 12
Cuts at: 5026 5372 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 562 385 367 346 173 86
17 12
Bsu36I CC'TnA_GG
Cuts at: 2564 2564
Size: 5377
BtgI C'CryG_G
Cuts at: 513 1065 2331 513
Size: 552 1266 3559
Fragments arranged by size:
3559 1266 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2296 487
Size: 683 56 1070 3568
Fragments arranged by size:
3568 1070 683 56
BtsI GCAGTG_nn'
Cuts at: 2224 2893 3687 3707 2224
Size: 669 794 20 3894
Fragments arranged by size:
3894 794 669 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5377
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5342
DraI TTT'AAA
Cuts at: 2209 2681 2209
Size: 472 4905
DraIII CAC_nnn'GTG
Cuts at: 2392 2392
Size: 5377
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2540 4384 809
Size: 507 1224 1844 1802
Fragments arranged by size:
1844 1802 1224 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2630 2824 3713
Size: 54 1425 50 275 18 800 194 889
Cuts at: 3713 5342 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 800 275 194 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2824 1537
Size: 275 1012 4090
Fragments arranged by size:
4090 1012 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2492 3307 1353
Size: 1139 815 3423
Fragments arranged by size:
3423 1139 815
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3964 4338 4484 387
Size: 1064 138 2375 374 146 1280
Fragments arranged by size:
2375 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2074 2394 2663 3440 4037 4824 5092
Size: 393 442 320 269 777 597 787 268
Cuts at: 5092 1239
Size: 1524
Fragments arranged by size:
1524 787 777 597 442 393 320 269
268
EcoO109I rG'GnC_Cy
Cuts at: 2240 2240
Size: 5377
EcoRI G'AATT_C
Cuts at: 2686 3064 2686
Size: 378 4999
FspI TGC'GCA
Cuts at: 3883 3883
Size: 5377
HaeII r_GCGC'y
Cuts at: 1678 4524 1678
Size: 2846 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2260 2292 2354 2386 4018
Size: 32 135 32 688 32 62 32 1632
Cuts at: 4018 4050 4092 4124 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1632 688 135 62 42 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2721 2967 669
Size: 988 281 783 246 3079
Fragments arranged by size:
3079 988 783 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5377
HpaI GTT'AAC
Cuts at: 2967 2967
Size: 5377
KpnI G_GTAC'C
Cuts at: 2702 2702
Size: 5377
MfeI C'AATT_G
Cuts at: 2976 2976
Size: 5377
MluI A'CGCG_T
Cuts at: 5253 5253
Size: 5377
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4491 4675 1305
Size: 3186 184 2007
Fragments arranged by size:
3186 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2632 10
Size: 54 1425 343 800 2755
Fragments arranged by size:
2755 1425 800 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2009 2270 3335 3694 3853 518
Size: 648 843 261 1065 359 159 2042
Fragments arranged by size:
2042 1065 843 648 359 261 159
MspA1I CmG'CkG
Cuts at: 1606 2538 2793 3470 4618 4863 1606
Size: 932 255 677 1148 245 2120
Fragments arranged by size:
2120 1148 932 677 255 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4825
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5377
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5377
NotI GC'GGCC_GC
Cuts at: 2824 2824
Size: 5377
NspI r_CATG'y
Cuts at: 1132 1229 2368 2662 2735 4280 1132
Size: 97 1139 294 73 1545 2229
Fragments arranged by size:
2229 1545 1139 294 97 73
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5377
PciI A'CATG_T
Cuts at: 2364 4276 2364
Size: 1912 3465
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5377
PfoI T'CCnGG_A
Cuts at: 2529 2529
Size: 5377
PmeI GTTT'AAAC
Cuts at: 2681 2681
Size: 5377
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3446 3478 4959 4991 3446
Size: 32 1481 32 3832
Fragments arranged by size:
3832 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5377
PsiI TTA'TAA
Cuts at: 2947 2947
Size: 5377
PspOMI G'GGCC_C
Cuts at: 2239 2239
Size: 5377
PstI C_TGCA'G
Cuts at: 830 2219 2729 830
Size: 1389 510 3478
Fragments arranged by size:
3478 1389 510
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5377
PvuII CAG'CTG
Cuts at: 2538 2538
Size: 5377
SalI G'TCGA_C
Cuts at: 1936 2719 1936
Size: 783 4594
SbfI CC_TGCA'GG
Cuts at: 2729 2729
Size: 5377
ScaI AGT'ACT
Cuts at: 3625 5337 3625
Size: 1712 3665
SfcI C'TryA_G
Cuts at: 826 1045 2215 2725 3860 4541 4732 826
Size: 219 1170 510 1135 681 191 1471
Fragments arranged by size:
1471 1170 1135 681 510 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5377
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5377
SmaI CCC'GGG
Cuts at: 1872 2704 1872
Size: 832 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3481 4382 4644 820
Size: 197 926 1538 901 262 1553
Fragments arranged by size:
1553 1538 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3168 493
Size: 2675 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5377
SphI G_CATG'C
Cuts at: 1132 2662 2735 1132
Size: 1530 73 3774
Fragments arranged by size:
3774 1530 73
SspI AAT'ATT
Cuts at: 5 52 3301 5
Size: 47 3249 2081
Fragments arranged by size:
3249 2081 47
StuI AGG'CCT
Cuts at: 1517 2304 1517
Size: 787 4590
StyI C'CwwG_G
Cuts at: 513 1065 2139 2816 513
Size: 552 1074 677 3074
Fragments arranged by size:
3074 1074 677 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3404 3421 3574 3759 4204 325
Size: 1255 1824 17 153 185 445 1498
Fragments arranged by size:
1824 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2160 2367 3623
Size: 274 80 33 51 1443 183 207 1256
Cuts at: 3623 5335 96
Size: 1712 138
Fragments arranged by size:
1712 1443 1256 274 207 183 138 80
51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5337 5369 5337
Size: 32 5345
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5377
XbaI T'CTAG_A
Cuts at: 2713 2713
Size: 5377
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5377
XmaI C'CCGG_G
Cuts at: 1870 2702 1870
Size: 832 4545
XmnI GAAnn'nnTTC
Cuts at: 2486 3506 2486
Size: 1020 4357
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3185 276
Size: 53 83 186 936 1651 2468
Fragments arranged by size:
2468 1651 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI
BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI
EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI
PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI
SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI
StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I EcoICRI EcoNI
EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PmlI PpuMI PspXI PsrI RsrII
SacI SacII SanDI SapI SexAI SfiI SfoI SrfI
SwaI XcmI