Restriction map for
pFN21AE1622
(Circular) (Six-base) MAPSORT of: pFN21AE1622.seq Check: 3988 from: 1 to: 5113
pFN21AE1622 5113 bp
With 182 enzymes: SgfI *
August 16, 2010 14:52 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2923 278
Size: 53 83 186 936 1387 2468
Fragments arranged by size:
2468 1387 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2456 1937
Size: 519 4594
Acc65I G'GTAC_C
Cuts at: 2434 2434
Size: 5113
AclI AA'CG_TT
Cuts at: 1563 3240 3613 1563
Size: 1677 373 3063
Fragments arranged by size:
3063 1677 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3176 4560 4828 1632
Size: 1544 1384 268 1917
Fragments arranged by size:
1917 1544 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4916
AflIII A'CryG_T
Cuts at: 1203 2275 4012 4989 1203
Size: 1072 1737 977 1327
Fragments arranged by size:
1737 1327 1072 977
AgeI A'CCGG_T
Cuts at: 3944 3944
Size: 5113
AhdI GACnn_n'nnGTC
Cuts at: 2279 3842 2279
Size: 1563 3550
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5113
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5113
AlwNI CAG_nnn'CTG
Cuts at: 2856 4428 2856
Size: 1572 3541
ApaI G_GGCC'C
Cuts at: 2061 2061
Size: 5113
ApaLI G'TGCA_C
Cuts at: 3170 4326 3170
Size: 1156 3957
ApoI r'AATT_y
Cuts at: 1493 2385 2422 2648 2800 4909 1493
Size: 892 37 226 152 2109 1697
Fragments arranged by size:
2109 1697 892 226 152 37
AseI AT'TA_AT
Cuts at: 160 1032 3667 160
Size: 872 2635 1606
Fragments arranged by size:
2635 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5113
AvaI C'yCGr_G
Cuts at: 1870 1943 2438 1870
Size: 73 495 4545
Fragments arranged by size:
4545 495 73
BamHI G'GATC_C
Cuts at: 2443 2810 2443
Size: 367 4746
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2434 3889 618
Size: 325 217 627 647 1455 1842
Fragments arranged by size:
1842 1455 647 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2061 2166 2432 1391
Size: 670 105 266 4072
Fragments arranged by size:
4072 670 266 105
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4142
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3304 3338 1903
Size: 34 1367 34 3678
Fragments arranged by size:
3678 1367 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3005 4215 3005
Size: 1210 3903
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5113
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3724 136
Size: 107 122 71 631 605 2052 1525
Fragments arranged by size:
2052 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5108 5108
Size: 5113
BlpI GC'TnA_GC
Cuts at: 2530 2530
Size: 5113
Bme1580I G_kGCm'C
Cuts at: 1790 2061 3174 4330 1790
Size: 271 1113 1156 2573
Fragments arranged by size:
2573 1156 1113 271
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5113
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2844 3802 442
Size: 416 53 83 399 24 1427 958 1753
Fragments arranged by size:
1753 1427 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5113
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2114 3773 1239
Size: 875 1659 2579
Fragments arranged by size:
2579 1659 875
Bpu10I CC'TnA_GC
Cuts at: 2310 2310
Size: 5113
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3238 4103 4401 3238
Size: 865 298 3950
Fragments arranged by size:
3950 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3776 882
Size: 617 2277 2219
Fragments arranged by size:
2277 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2134 2904 493
Size: 711 930 770 2702
Fragments arranged by size:
2702 930 770 711
BsaBI GATnn'nnATC
Cuts at: 5107 5107
Size: 5113
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2920 3302 3937 275
Size: 53 83 186 936 1387 382 635 1451
Fragments arranged by size:
1451 1387 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3546 3944 4218 4365 4776 3546
Size: 398 274 147 411 3883
Fragments arranged by size:
3883 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4888
Fragments arranged by size:
4888 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5113
BseYI C'CCAG_C
Cuts at: 4316 4812 4316
Size: 496 4617
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2135 1163
Size: 573 399 4141
Fragments arranged by size:
4141 573 399
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2563 3324 4352 1540
Size: 275 186 562 761 1028 2301
Fragments arranged by size:
2301 1028 761 562 275 186
BsiHKAI G_wGCw'C
Cuts at: 2166 3174 3259 4330 2166
Size: 1008 85 1071 2949
Fragments arranged by size:
2949 1071 1008 85
BsmI GAATG_Cn'
Cuts at: 2311 2624 2717 2311
Size: 313 93 4707
Fragments arranged by size:
4707 313 93
BsmBI CGTCTCn'nnnn_
Cuts at: 2317 2317
Size: 5113
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2061 2166 2432 3174 3259 4330 1391
Size: 399 271 105 266 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 271 266 105 85
BspEI T'CCGG_A
Cuts at: 4776 4776
Size: 5113
BspHI T'CATG_A
Cuts at: 3002 4732 3002
Size: 1730 3383
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2468 844
Size: 1624 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3000 1394
Size: 429 1177 3507
Fragments arranged by size:
3507 1177 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2376 3608 3782 65
Size: 1183 1128 1232 174 1396
Fragments arranged by size:
1396 1232 1183 1128 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3757 3944 1700
Size: 110 1947 187 2869
Fragments arranged by size:
2869 1947 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5113
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5113
BssSI C'ACGA_G
Cuts at: 3173 4185 3173
Size: 1012 4101
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5113
BstBI TT'CG_AA
Cuts at: 3917 3917
Size: 5113
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5113
BstYI r'GATC_y
Cuts at: 1972 2233 2443 2810 3195 3212 4664 4750 4762
Size: 261 210 367 385 17 1452 86 12
Cuts at: 4762 5108 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 385 367 346 261 210 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3622
Fragments arranged by size:
3622 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4374
Fragments arranged by size:
4374 683 56
BtsI GCAGTG_nn'
Cuts at: 2629 3423 3443 2629
Size: 794 20 4299
Fragments arranged by size:
4299 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5113
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5078
DraI TTT'AAA
Cuts at: 2417 2417
Size: 5113
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4120 809
Size: 507 2804 1802
Fragments arranged by size:
2804 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2560 3449 5078
Size: 54 1425 50 275 18 730 889 1629
Cuts at: 5078 8
Size: 43
Fragments arranged by size:
1629 1425 889 730 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2560 1537
Size: 275 748 4090
Fragments arranged by size:
4090 748 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3043 1353
Size: 1690 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2011 3700 4074 4220 387
Size: 1064 138 422 1689 374 146 1280
Fragments arranged by size:
1689 1280 1064 422 374 146 138
EcoICRI GAG'CTC
Cuts at: 2164 2164
Size: 5113
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2114 3176 3773 4560 4828 1239
Size: 393 482 1062 597 787 268 1524
Fragments arranged by size:
1524 1062 787 597 482 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2043 2057 2043
Size: 14 5099
EcoRI G'AATT_C
Cuts at: 2422 2800 2422
Size: 378 4735
FspI TGC'GCA
Cuts at: 3619 3619
Size: 5113
HaeII r_GCGC'y
Cuts at: 1678 4260 1678
Size: 2582 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2265 2297 3754 3786 3828
Size: 32 135 32 693 32 1457 32 42
Cuts at: 3828 3860 1373
Size: 32 2626
Fragments arranged by size:
2626 1457 693 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2290 2457 2703 669
Size: 988 281 352 167 246 3079
Fragments arranged by size:
3079 988 352 281 246 167
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5113
HpaI GTT'AAC
Cuts at: 2290 2703 2290
Size: 413 4700
KpnI G_GTAC'C
Cuts at: 2438 2438
Size: 5113
MfeI C'AATT_G
Cuts at: 2712 2712
Size: 5113
MluI A'CGCG_T
Cuts at: 2275 4989 2275
Size: 2714 2399
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4227 4411 1305
Size: 2922 184 2007
Fragments arranged by size:
2922 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3291
Fragments arranged by size:
3291 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3071 3430 3589 518
Size: 648 1905 359 159 2042
Fragments arranged by size:
2042 1905 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2027 2111 2529 3206 4354 4599 1606
Size: 421 84 418 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 421 418 245 84
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3622
Fragments arranged by size:
3622 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5113
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5113
NotI GC'GGCC_GC
Cuts at: 2560 2560
Size: 5113
NspI r_CATG'y
Cuts at: 1132 1229 2471 4016 1132
Size: 97 1242 1545 2229
Fragments arranged by size:
2229 1545 1242 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5113
PciI A'CATG_T
Cuts at: 4012 4012
Size: 5113
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5113
PfoI T'CCnGG_A
Cuts at: 2166 2166
Size: 5113
PmeI GTTT'AAAC
Cuts at: 2417 2417
Size: 5113
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3182 3214 4695 4727 3182
Size: 32 1481 32 3568
Fragments arranged by size:
3568 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2043 2043
Size: 5113
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5113
PsiI TTA'TAA
Cuts at: 2683 2683
Size: 5113
PspOMI G'GGCC_C
Cuts at: 2057 2057
Size: 5113
PstI C_TGCA'G
Cuts at: 830 2465 830
Size: 1635 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5113
SacI G_AGCT'C
Cuts at: 2166 2166
Size: 5113
SalI G'TCGA_C
Cuts at: 1936 2455 1936
Size: 519 4594
SanDI GG'GwC_CC
Cuts at: 2043 2043
Size: 5113
SbfI CC_TGCA'GG
Cuts at: 2465 2465
Size: 5113
ScaI AGT'ACT
Cuts at: 3361 5073 3361
Size: 1712 3401
SfcI C'TryA_G
Cuts at: 826 1045 2300 2461 3596 4277 4468 826
Size: 219 1255 161 1135 681 191 1471
Fragments arranged by size:
1471 1255 1135 681 219 191 161
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5113
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5113
SmaI CCC'GGG
Cuts at: 1872 2440 1872
Size: 568 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3217 4118 4380 820
Size: 197 926 1274 901 262 1553
Fragments arranged by size:
1553 1274 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2904 493
Size: 2411 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5113
SphI G_CATG'C
Cuts at: 1132 2471 1132
Size: 1339 3774
SspI AAT'ATT
Cuts at: 5 52 3037 5
Size: 47 2985 2081
Fragments arranged by size:
2985 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5113
StyI C'CwwG_G
Cuts at: 513 1065 2004 2346 2552 513
Size: 552 939 342 206 3074
Fragments arranged by size:
3074 939 552 342 206
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3140 3157 3310 3495 3940 325
Size: 1255 1560 17 153 185 445 1498
Fragments arranged by size:
1560 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3359 5071 96
Size: 274 80 33 51 1443 1382 1712 138
Fragments arranged by size:
1712 1443 1382 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5073 5105 5073
Size: 32 5081
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5113
XbaI T'CTAG_A
Cuts at: 2449 2449
Size: 5113
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5113
XmaI C'CCGG_G
Cuts at: 1870 2438 1870
Size: 568 4545
XmnI GAAnn'nnTTC
Cuts at: 3242 3242
Size: 5113
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2921 276
Size: 53 83 186 936 1387 2468
Fragments arranged by size:
2468 1387 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI
PspOMI PstI PvuI SacI SalI SanDI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI BsiWI BstXI BstZ17I Bsu36I DraIII EcoNI
EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PmlI PspXI PsrI PvuII RsrII
SacII SapI SexAI SfiI SfoI SrfI SwaI XcmI