Restriction map for
pFN21AE0843
(Circular) (Six-base) MAPSORT of: pFN21AE0843.seq Check: 904 from: 1 to: 5764
pFN21AE0843 5764 bp
With 182 enzymes: SgfI *
October 20, 2009 10:52 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2460 2460
Size: 5764
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3574 278
Size: 53 83 186 936 2038 2468
Fragments arranged by size:
2468 2038 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 3107 1937
Size: 1170 4594
Acc65I G'GTAC_C
Cuts at: 3085 3085
Size: 5764
AclI AA'CG_TT
Cuts at: 1563 3891 4264 1563
Size: 2328 373 3063
Fragments arranged by size:
3063 2328 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2067 3827 5211 5479 1632
Size: 435 1760 1384 268 1917
Fragments arranged by size:
1917 1760 1384 435 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5567
AflIII A'CryG_T
Cuts at: 1203 4663 5640 1203
Size: 3460 977 1327
Fragments arranged by size:
3460 1327 977
AgeI A'CCGG_T
Cuts at: 4595 4595
Size: 5764
AhdI GACnn_n'nnGTC
Cuts at: 4493 4493
Size: 5764
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5764
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5764
AlwNI CAG_nnn'CTG
Cuts at: 3507 5079 3507
Size: 1572 4192
ApaI G_GGCC'C
Cuts at: 2536 2536
Size: 5764
ApaLI G'TGCA_C
Cuts at: 3821 4977 3821
Size: 1156 4608
ApoI r'AATT_y
Cuts at: 1493 2191 3073 3299 3451 5560 1493
Size: 698 882 226 152 2109 1697
Fragments arranged by size:
2109 1697 882 698 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4318 160
Size: 872 3286 1606
Fragments arranged by size:
3286 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5764
AvaI C'yCGr_G
Cuts at: 1870 1943 3089 1870
Size: 73 1146 4545
Fragments arranged by size:
4545 1146 73
BamHI G'GATC_C
Cuts at: 2181 3094 3461 2181
Size: 913 367 4484
Fragments arranged by size:
4484 913 367
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 3085 4540 618
Size: 325 217 627 1298 1455 1842
Fragments arranged by size:
1842 1455 1298 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2536 2846 3083 1391
Size: 1145 310 237 4072
Fragments arranged by size:
4072 1145 310 237
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2725 928
Size: 971 826 3967
Fragments arranged by size:
3967 971 826
BbvCI CC'TCA_GC
Cuts at: 2411 2411
Size: 5764
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3955 3989 1903
Size: 34 2018 34 3678
Fragments arranged by size:
3678 2018 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2304 2615 3656 4866 2304
Size: 311 1041 1210 3202
Fragments arranged by size:
3202 1210 1041 311
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5764
BfrBI ATG'CAT
Cuts at: 2555 2555
Size: 5764
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4375 136
Size: 107 122 71 631 605 2703 1525
Fragments arranged by size:
2703 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5759 5759
Size: 5764
BlpI GC'TnA_GC
Cuts at: 3181 3181
Size: 5764
Bme1580I G_kGCm'C
Cuts at: 1790 2399 2536 3825 4981 1790
Size: 609 137 1289 1156 2573
Fragments arranged by size:
2573 1289 1156 609 137
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5764
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2454 3495 4453
Size: 416 53 83 399 24 1037 1041 958
Cuts at: 4453 442
Size: 1753
Fragments arranged by size:
1753 1041 1037 958 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5764
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2426 3009 2426
Size: 583 5181
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2193 4424 1239
Size: 954 2231 2579
Fragments arranged by size:
2579 2231 954
Bpu10I CC'TnA_GC
Cuts at: 2411 2411
Size: 5764
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3889 4754 5052 3889
Size: 865 298 4601
Fragments arranged by size:
4601 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2239 4427 882
Size: 617 740 2188 2219
Fragments arranged by size:
2219 2188 740 617
BsaAI yAC'GTr
Cuts at: 493 1204 3555 493
Size: 711 2351 2702
Fragments arranged by size:
2702 2351 711
BsaBI GATnn'nnATC
Cuts at: 2480 5758 2480
Size: 3278 2486
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3571 3953 4588 275
Size: 53 83 186 936 2038 382 635 1451
Fragments arranged by size:
2038 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 4197 4595 4869 5016 5427 4197
Size: 398 274 147 411 4534
Fragments arranged by size:
4534 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2771 2801 1178
Size: 30 165 30 1368 30 4141
Fragments arranged by size:
4141 1368 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2513 1186
Size: 1327 4437
BseYI C'CCAG_C
Cuts at: 2529 2956 4967 5463 2529
Size: 427 2011 496 2830
Fragments arranged by size:
2830 2011 496 427
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 5191
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3214 3975 5003 1540
Size: 275 186 1213 761 1028 2301
Fragments arranged by size:
2301 1213 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2846 3825 3910 4981 2846
Size: 979 85 1071 3629
Fragments arranged by size:
3629 1071 979 85
BsmI GAATG_Cn'
Cuts at: 2557 3275 3368 2557
Size: 718 93 4953
Fragments arranged by size:
4953 718 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2399 2536 2846 3083 3825 3910 4981
Size: 399 609 137 310 237 742 85 1071
Cuts at: 4981 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 609 399 310 237 137
85
BspEI T'CCGG_A
Cuts at: 5427 5427
Size: 5764
BspHI T'CATG_A
Cuts at: 2982 3653 5383 2982
Size: 671 1730 3363
Fragments arranged by size:
3363 1730 671
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2460 3119 844
Size: 1616 659 3489
Fragments arranged by size:
3489 1616 659
BsrBI CCG'CTC
Cuts at: 1394 1823 3651 1394
Size: 429 1828 3507
Fragments arranged by size:
3507 1828 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 4259 4433 65
Size: 1183 3011 174 1396
Fragments arranged by size:
3011 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4408 4595 1700
Size: 110 2598 187 2869
Fragments arranged by size:
2869 2598 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5764
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5764
BssSI C'ACGA_G
Cuts at: 3824 4836 3824
Size: 1012 4752
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2421 794
Size: 1627 4137
BstBI TT'CG_AA
Cuts at: 4568 4568
Size: 5764
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5764
BstXI CCAn_nnnn'nTGG
Cuts at: 2916 2916
Size: 5764
BstYI r'GATC_y
Cuts at: 1972 2181 2492 3094 3461 3846 3863 5315 5401
Size: 209 311 602 367 385 17 1452 86
Cuts at: 5401 5413 5759 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 602 385 367 346 311 209
86 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2250 2289 2727 513
Size: 552 939 246 39 438 3550
Fragments arranged by size:
3550 939 552 438 246 39
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 5025
Fragments arranged by size:
5025 683 56
BtsI GCAGTG_nn'
Cuts at: 3280 4074 4094 3280
Size: 794 20 4950
Fragments arranged by size:
4950 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5764
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5729
DraI TTT'AAA
Cuts at: 2305 3068 2305
Size: 763 5001
DraIII CAC_nnn'GTG
Cuts at: 2392 2392
Size: 5764
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4771 809
Size: 507 3455 1802
Fragments arranged by size:
3455 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 3211 4100 5729
Size: 54 1425 50 275 18 1381 889 1629
Cuts at: 5729 8
Size: 43
Fragments arranged by size:
1629 1425 1381 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 3211 1537
Size: 275 1399 4090
Fragments arranged by size:
4090 1399 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3694 1353
Size: 2341 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4351 4725 4871 387
Size: 1064 138 2762 374 146 1280
Fragments arranged by size:
2762 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2844 2844
Size: 5764
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2067 2193 3827 4424 5211 5479 1239
Size: 393 435 126 1634 597 787 268 1524
Fragments arranged by size:
1634 1524 787 597 435 393 268 126
EcoO109I rG'GnC_Cy
Cuts at: 2533 2533
Size: 5764
EcoRI G'AATT_C
Cuts at: 3073 3451 3073
Size: 378 5386
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2392 2392
Size: 5764
FspI TGC'GCA
Cuts at: 4270 4270
Size: 5764
HaeII r_GCGC'y
Cuts at: 1678 4911 1678
Size: 3233 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2166 2198 4405 4437 4479
Size: 32 135 32 594 32 2207 32 42
Cuts at: 4479 4511 1373
Size: 32 2626
Fragments arranged by size:
2626 2207 594 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 3108 3354 669
Size: 988 281 1170 246 3079
Fragments arranged by size:
3079 1170 988 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5764
HpaI GTT'AAC
Cuts at: 3354 3354
Size: 5764
KpnI G_GTAC'C
Cuts at: 3089 3089
Size: 5764
MfeI C'AATT_G
Cuts at: 3363 3363
Size: 5764
MluI A'CGCG_T
Cuts at: 5640 5640
Size: 5764
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 1990 2788 4878 5062 1305
Size: 685 798 2090 184 2007
Fragments arranged by size:
2090 2007 798 685 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3942
Fragments arranged by size:
3942 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2828 3722 4081 4240 518
Size: 648 1662 894 359 159 2042
Fragments arranged by size:
2042 1662 894 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 3180 3857 5005 5250 1606
Size: 1574 677 1148 245 2120
Fragments arranged by size:
2120 1574 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 2289 2727 513
Size: 552 939 285 438 3550
Fragments arranged by size:
3550 939 552 438 285
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5764
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5764
NotI GC'GGCC_GC
Cuts at: 3211 3211
Size: 5764
NsiI A_TGCA'T
Cuts at: 2557 2557
Size: 5764
NspI r_CATG'y
Cuts at: 1132 1229 2666 3122 4667 1132
Size: 97 1437 456 1545 2229
Fragments arranged by size:
2229 1545 1437 456 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5764
PciI A'CATG_T
Cuts at: 4663 4663
Size: 5764
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5764
PmeI GTTT'AAAC
Cuts at: 3068 3068
Size: 5764
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3833 3865 5346 5378 3833
Size: 32 1481 32 4219
Fragments arranged by size:
4219 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5764
PsiI TTA'TAA
Cuts at: 2214 3334 2214
Size: 1120 4644
PspOMI G'GGCC_C
Cuts at: 2532 2532
Size: 5764
PstI C_TGCA'G
Cuts at: 830 2795 3023 3116 830
Size: 1965 228 93 3478
Fragments arranged by size:
3478 1965 228 93
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5764
SacI G_AGCT'C
Cuts at: 2846 2846
Size: 5764
SalI G'TCGA_C
Cuts at: 1936 3106 1936
Size: 1170 4594
SbfI CC_TGCA'GG
Cuts at: 3023 3116 3023
Size: 93 5671
ScaI AGT'ACT
Cuts at: 4012 5724 4012
Size: 1712 4052
SfcI C'TryA_G
Cuts at: 826 1045 2743 2791 2895 3019 3112 4247 4928
Size: 219 1698 48 104 124 93 1135 681
Cuts at: 4928 5119 826
Size: 191 1471
Fragments arranged by size:
1698 1471 1135 681 219 191 124 104
93 48
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5764
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5764
SmaI CCC'GGG
Cuts at: 1872 3091 1872
Size: 1219 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3868 4769 5031 820
Size: 197 926 1925 901 262 1553
Fragments arranged by size:
1925 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3555 493
Size: 3062 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5764
SphI G_CATG'C
Cuts at: 1132 3122 1132
Size: 1990 3774
SspI AAT'ATT
Cuts at: 5 52 2345 3688 5
Size: 47 2293 1343 2081
Fragments arranged by size:
2293 2081 1343 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5764
StyI C'CwwG_G
Cuts at: 513 1065 2004 2277 2289 2498 2727 3203 513
Size: 552 939 273 12 209 229 476 3074
Fragments arranged by size:
3074 939 552 476 273 229 209 12
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3791 3808 3961 4146 4591 325
Size: 1255 2211 17 153 185 445 1498
Fragments arranged by size:
2211 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 4010 5722 96
Size: 274 80 33 51 1443 2033 1712 138
Fragments arranged by size:
2033 1712 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5724 5756 5724
Size: 32 5732
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5764
XbaI T'CTAG_A
Cuts at: 3100 3100
Size: 5764
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2725 2833 2935 2725
Size: 108 102 5554
Fragments arranged by size:
5554 108 102
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5764
XmaI C'CCGG_G
Cuts at: 1870 3089 1870
Size: 1219 4545
XmnI GAAnn'nnTTC
Cuts at: 3893 3893
Size: 5764
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3572 276
Size: 53 83 186 936 2038 2468
Fragments arranged by size:
2468 2038 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI
AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI
BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I
BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI
BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI
BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI
BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII
BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI
DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI
EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NsiI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI
SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AfeI AloI AscI AvrII BaeI BbeI BsiWI BsmBI
BstZ17I Bsu36I EcoNI EcoRV FseI FspAI KasI NaeI
NarI NgoMIV NruI PacI PfoI PmlI PpuMI PspXI
PsrI PvuII RsrII SacII SanDI SapI SexAI SfiI
SfoI SrfI SwaI